jgi.p|Nanoce1779_2|593545, mRNA_6034 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593545
Unique Name	mRNA_6034
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1020
Alignment location	scaffold_14:367521..368540 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593631
Track	FilteredModels2
ProteinId	593545

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:367521..368540 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593545	gene_6034	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593545	mRNA_6034-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6034	CDS_6034	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:367521..368540-
coding sequence from alignment at scaffold_14:367521..368540-

mRNA sequence

>mRNA_6034 ID=mRNA_6034|Name=jgi.p|Nanoce1779_2|593545|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp
GCTCCTACGGCCGCTCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTT
CCCGACAGCGGCGCCCACCGCGATGATCTATACTCCTCCTCCCACCGCTG
CCCCCACACTGGCGCCAACAGCCACACCCACGGCGGCCCCGACAGCCTCG
CCCACGGTTGCTCCTACGGTTTCCCCTACGGCGTCGCCCACCGAGATGAT
CTATACTCCTCCTCCCACTACTGCCCCCACACTGGCGCCAACGGCTTCGC
CCACGGCGGCCCCGACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCA
ACCACCACTCCTACCGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGA
GATTTCTTGGGGCCCGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAA
CGCCGTCACCGACCGAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCA
AATGCGGTAGATGAACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCC
CGCTCCCACGGTGTTGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCC
GAGGAAGCGCCTAGGTTAAGGAAAATGACTGCTTGGGTAACATGCCAGAG
ACATTGTGGCGGTGAGAAGACGAGCGTGAGTGGAAGAGGGAAAAAAGAGT
GAAGGGAATGAAGAAAAGGTTAAGAAGAGTGACGATAGAGAATATGGACT
ATACCTCTCCGTTCTTGCTACGGGTAGGAAGAGAAGAATCGACTCTGAAC
CAAAGGGCTGAAGGGAAAAGTCTTTTTATGATGTACTAGTCAGAAGGATA
GGTATCTGGCGCCTTTTCGCGCCTGGAGGTGGGGATACTTAGATCGCATA
GCTCGCGCGCAATAAGATAAAGGCTACTGACAGGTACGGTGATCATAGAT
TGACATGAAAAATACCCATGGAAAGACCTACATGTACAAGGGCATGGGGG
GAAATCAGGACCCCCCCTTAAAAAAAGTACCAAAATAGGATAATGCACAT
TGCCGCAAGCGAAAAAGGAG

protein sequence of jgi.p|Nanoce1779_2|593545

>mRNA_6034-protein ID=mRNA_6034-protein|Name=jgi.p|Nanoce1779_2|593545|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
APTAAPTVAPTVAPTAFPTAAPTAMIYTPPPTAAPTLAPTATPTAAPTAS
PTVAPTVSPTASPTEMIYTPPPTTAPTLAPTASPTAAPTASPTVAPTAAP
TTTPTAAATAAPTSIPEISWGPPEPTQTITLAPTPSPTEKSVYSAPASEP
NAVDEPVVYSPAKPSSPAPTVLPTSATNGRHLRRGSA*

mRNA from alignment at scaffold_14:367521..368540-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6034 ID=mRNA_6034|Name=jgi.p|Nanoce1779_2|593545|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp|location=Sequence derived from alignment at scaffold_14:367521..368540- (Nannochloropsis oceanica)
GCTCCTACGGCCGCTCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTT
CCCGACAGCGGCGCCCACCGCGATGATCTATACTCCTCCTCCCACCGCTG
CCCCCACACTGGCGCCAACAGCCACACCCACGGCGGCCCCGACAGCCTCG
CCCACGGTTGCTCCTACGGTTTCCCCTACGGCGTCGCCCACCGAGATGAT
CTATACTCCTCCTCCCACTACTGCCCCCACACTGGCGCCAACGGCTTCGC
CCACGGCGGCCCCGACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCA
ACCACCACTCCTACCGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGA
GATTTCTTGGGGCCCGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAA
CGCCGTCACCGACCGAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCA
AATGCGGTAGATGAACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCC
CGCTCCCACGGTGTTGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCC
GAGGAAGCGCCTAGGTTAAGGAAAATGACTGCTTGGGTAACATGCCAGAG
ACATTGTGGCGGTGAGAAGACGAGCGTGAGTGGAAGAGGGAAAAAAGAGT
GAAGGGAATGAAGAAAAGGTTAAGAAGAGTGACGATAGAGAATATGGACT
ATACCTCTCCGTTCTTGCTACGGGTAGGAAGAGAAGAATCGACTCTGAAC
CAAAGGGCTGAAGGGAAAAGTCTTTTTATGATGTACTAGTCAGAAGGATA
GGTATCTGGCGCCTTTTCGCGCCTGGAGGTGGGGATACTTAGATCGCATA
GCTCGCGCGCAATAAGATAAAGGCTACTGACAGGTACGGTGATCATAGAT
TGACATGAAAAATACCCATGGAAAGACCTACATGTACAAGGGCATGGGGG
GAAATCAGGACCCCCCCTTAAAAAAAGTACCAAAATAGGATAATGCACAT
TGCCGCAAGCGAAAAAGGAG

Coding sequence (CDS) from alignment at scaffold_14:367521..368540-

>mRNA_6034 ID=mRNA_6034|Name=jgi.p|Nanoce1779_2|593545|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_14:367521..368540- (Nannochloropsis oceanica)
GCTCCTACGGCCGCTCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTT
CCCGACAGCGGCGCCCACCGCGATGATCTATACTCCTCCTCCCACCGCTG
CCCCCACACTGGCGCCAACAGCCACACCCACGGCGGCCCCGACAGCCTCG
CCCACGGTTGCTCCTACGGTTTCCCCTACGGCGTCGCCCACCGAGATGAT
CTATACTCCTCCTCCCACTACTGCCCCCACACTGGCGCCAACGGCTTCGC
CCACGGCGGCCCCGACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCA
ACCACCACTCCTACCGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGA
GATTTCTTGGGGCCCGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAA
CGCCGTCACCGACCGAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCA
AATGCGGTAGATGAACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCC
CGCTCCCACGGTGTTGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCC
GAGGAAGCGCCTAG

Synonyms

Publications