jgi.p|Nanoce1779_2|80491, mRNA_6033 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|80491
Unique Name	mRNA_6033
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2948
Alignment location	scaffold_14:364239..367186 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	80577
Track	FilteredModels2
ProteinId	80491

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:364239..367186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|80491	gene_6033	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|80491	mRNA_6033-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6033	CDS_6033	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:364239..367186+
coding sequence from alignment at scaffold_14:364239..367186+

mRNA sequence

>mRNA_6033 ID=mRNA_6033|Name=jgi.p|Nanoce1779_2|80491|organism=Nannochloropsis oceanica|type=mRNA|length=2948bp
AAGCCTGAGGTTTGCGATGTGATTCTGAAATGTACCATTGCTCGACCCGC
TGTCACCAGCGCAAGTTTCGGTGCTTTGGCTCGTGGGGCGGCATCCACGG
CGACCATGAAGCGAGAACGGAGCTTCTCGGCATCGTCCTCGGTAAGCACA
GTTACAACCCTGGCAGCGGATGAGACTGAAGAGGAGGAAGCGGGGGATAC
AGAAGGGGAGGACTCGGAGGGCACCACAGGAGCAGTGGTAGCAGCAGCAA
CAGTGGTGGTAGGAACTGAAGCAGGGTTGGCGAGATCAACAGCGACGGCC
GCTGTAGCAGGACAGGAGGGTGTGAGGCCTTTGAGCGACAAAAATCAGCA
TGACCTAATGCAAGAGGAGGGCCTCATGCCGCTCCTGTTGGTGGATGAGG
GCGTCAAAGAGCAGGAAGGGGAGGAGGAAGAAGTAGGAGAGGCAGAAAAG
CGCAAGCATGTGGAAGGCGATCGGGCACAGAAAAAACACAAGGGCCTGCA
TACGGAGACTTTGTTAGCAGGCTTGGCGATGGAGCATCAGCAGCATGGAG
AGGATGAGAAGCAACGGGACGGCCATTTGAAGATGACGAGATCTGTCTCG
TCGCCGTCGCCCTTCCTACAGCCTCAAGCTTTGCAATCGCCCCCATCCAA
CCCACACCAGAAACGCGATGTTTCTATAGGAAGGTCCCATGTACGTATAT
TGTACGCACGGTCGGTCGTTTTGGCAAAAAAATCTCAGTACTTTGACCGG
GCTTTTCGGAGGGGGGGGTTTCGGGAGATGGGTGAACGGCAACTAGAGTT
GAATTTTGACGATGAAGAAGAGTTTGATGATTTCGCCCGATTAATTCGCT
TGTGCCATGGTCCTAGCTTTACGAGCGAGGCGGTGGGTACTGATGGTGGT
GGTTTGTGTAATGGTAGTATGGAAGGGGGAGGAGGAGGAGGAGAAGGAGG
GGCGGCGGGAAGGCGACGGGAGCTACGGAGGGAGGAACTGCTGAGGTTGG
TGTTGGTAGCAGACGCATTTGAAGTTGTGCAGTGTGTGGAGGAGGGGGTG
ATGGCGCTGTGTGCTCGGATGGGATATACCCTGGCCATGAAAACGTTCCA
GAGGGTGCCGGACGGACTGAGGAATCATGAGGCGATTCGCAGGCTCTTGC
TGGCGGCGGGGGAGGCCTTGGCAAAAGGGATCGGCGTATTGGCAGGGCCT
AAAATATGGTCCAGGAGGAGGCCAGACGTCTCGAGGGGGGGAAAGGACAA
GTATGTTAGGTTCTTGCCTGACCTCCAAGGGAGACTGCAGCAGTTGCCAT
TGATGGCCATTGATTTTTTGGTCAGGTCCCCGGCGTTGCGGTTGAAAAGT
GAAAATGACGCGTTTGCATTTGTGTGTGCTTGGCTGAAGGGGAAGCAGGG
AGGGGAGGGAGGGGGAGGGGGGGGATGGAGCAAGAGTCAGACGCAGCGGG
CGTTTAATTCGCTGATGTCGGGCTTGAGGTGGCATGCGATGACGAGCGAA
TTCTTAGCGACGGTTGTGAGTCAGAGCAGATGGGTGGGGCAGAGCGGGCG
TCTCCTTGATATCCTAAGAAGTGCCTTGTGCTTCCGTGACTCAACCTCCC
ATATCCGTCGTTTTGTCGTGCACCAGGCCGCGACCCAGCATGCGGAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACATGGGCAGCAGCAGCA
GCAGGCCGAGGGCGAGGAAGGAGGTGGAGAAGATGGGGGAGAGGGGGAGC
GGACGGCCAAAAGGGCGGCGCTGAAGGCTTTTGACAGCAGGGGAGAGGAT
GATGAGGATGAGCTGTATGTGTTGAAAGGGACGTTTTCCCTGCACAAGTG
CTTAAGCCTTCCTCCTGGAAAATTTATTCGACGATACTTGGGGATAGTTC
AGGGATTGCCTTGCTTTCTGGATCTGGAGAGGTCGGTGTTGGAAGGAGGA
GATGGAGGAGGAGGAGGAGGAGGAGTAGGGGGTAGGGAGACCTTGGGTTT
GTTTTTGGGGATATGCAATTCAGGGAATGACCGGGGAGGTGCAGGATTAT
GCGAAGAGGGAGGGAGTAATGGTAGTGGCAGAAGTAATGGAGGGAAAACA
AGGGATGGGTTGAGTACGCCTGTGTTGCCGGTAGGGTGTTTGGTGAGATA
TGACATAAGTGTTGGGTCTGTGACGCGTGGACCCAGTATTGATATATTTG
CGAATGCCAAGCAGCCGTGGGGGTATCGTGATGTGCTTTCCAAGGGATGG
GGGGAGGTCGTGAGGGAGGGAAGTCCTCATTTTGATCGGCAGGGACGATT
GGAGGTTATGGCCCGGGTGAGGTTCTTGAGAGATGGCAGGGTGACAACGG
TTATGGAAGAGGAAGATGAGGAGGATGATGACAGTTCGGATGAGGAGGAG
GAGGATGGAATGATAGAGGAGGAAGAGGAGGAGGAGGAAGAAGAGGAGGA
AGAAGACGATGACGAGGAGGAGGAGGAAGATGAAGGGCTTGGAATCATGA
TGCAGGGAGGCGGAGAGGATGTCGTGCAGGAGGGGACAGGGTTCGCGATG
GGTGGGCATGAAGCGGGAGGAGAAGGAGAAGGAGGAGGATTGGGAGGACG
AGAGGGTGGCGCGCCGGGGTGGGCATTTGGTTTTTCTGATGCTGACTCGA
GTGACTCGAGTCCGGATGCTTAAACACCTGAAGGAGGGAAGGGGGCGAGG
AAAGGAAGGCGGAAGGGAGGACGGCGGAAGAAAAAGTTTCGCCGTGTACA
TAATTTGAGTACAAAAAGAAAGAGGACTTGAACGTGCTCACGGTCGGTCT
CAGCAAGCGCAAATGCAAGCGGGCATTATCAAGACAAACAAGACCAGATA
CCGAATAAGACAGGGGTTAAGCAGTGAGAATGCGGGTCTGACAAAACGAA
CATAGAAGAACGAAGAGTGAGATGAGACGATGACAAGCACGGAGAGTG

protein sequence of jgi.p|Nanoce1779_2|80491

>mRNA_6033-protein ID=mRNA_6033-protein|Name=jgi.p|Nanoce1779_2|80491|organism=Nannochloropsis oceanica|type=polypeptide|length=856bp
MKRERSFSASSSVSTVTTLAADETEEEEAGDTEGEDSEGTTGAVVAAATV
VVGTEAGLARSTATAAVAGQEGVRPLSDKNQHDLMQEEGLMPLLLVDEGV
KEQEGEEEEVGEAEKRKHVEGDRAQKKHKGLHTETLLAGLAMEHQQHGED
EKQRDGHLKMTRSVSSPSPFLQPQALQSPPSNPHQKRDVSIGRSHVRILY
ARSVVLAKKSQYFDRAFRRGGFREMGERQLELNFDDEEEFDDFARLIRLC
HGPSFTSEAVGTDGGGLCNGSMEGGGGGGEGGAAGRRRELRREELLRLVL
VADAFEVVQCVEEGVMALCARMGYTLAMKTFQRVPDGLRNHEAIRRLLLA
AGEALAKGIGVLAGPKIWSRRRPDVSRGGKDKYVRFLPDLQGRLQQLPLM
AIDFLVRSPALRLKSENDAFAFVCAWLKGKQGGEGGGGGGWSKSQTQRAF
NSLMSGLRWHAMTSEFLATVVSQSRWVGQSGRLLDILRSALCFRDSTSHI
RRFVVHQAATQHAEQQQQQQQQQQQPHGQQQQQAEGEEGGGEDGGEGERT
AKRAALKAFDSRGEDDEDELYVLKGTFSLHKCLSLPPGKFIRRYLGIVQG
LPCFLDLERSVLEGGDGGGGGGGVGGRETLGLFLGICNSGNDRGGAGLCE
EGGSNGSGRSNGGKTRDGLSTPVLPVGCLVRYDISVGSVTRGPSIDIFAN
AKQPWGYRDVLSKGWGEVVREGSPHFDRQGRLEVMARVRFLRDGRVTTVM
EEEDEEDDDSSDEEEEDGMIEEEEEEEEEEEEEDDDEEEEEDEGLGIMMQ
GGGEDVVQEGTGFAMGGHEAGGEGEGGGLGGREGGAPGWAFGFSDADSSD
SSPDA*

mRNA from alignment at scaffold_14:364239..367186+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6033 ID=mRNA_6033|Name=jgi.p|Nanoce1779_2|80491|organism=Nannochloropsis oceanica|type=mRNA|length=2948bp|location=Sequence derived from alignment at scaffold_14:364239..367186+ (Nannochloropsis oceanica)
AAGCCTGAGGTTTGCGATGTGATTCTGAAATGTACCATTGCTCGACCCGC
TGTCACCAGCGCAAGTTTCGGTGCTTTGGCTCGTGGGGCGGCATCCACGG
CGACCATGAAGCGAGAACGGAGCTTCTCGGCATCGTCCTCGGTAAGCACA
GTTACAACCCTGGCAGCGGATGAGACTGAAGAGGAGGAAGCGGGGGATAC
AGAAGGGGAGGACTCGGAGGGCACCACAGGAGCAGTGGTAGCAGCAGCAA
CAGTGGTGGTAGGAACTGAAGCAGGGTTGGCGAGATCAACAGCGACGGCC
GCTGTAGCAGGACAGGAGGGTGTGAGGCCTTTGAGCGACAAAAATCAGCA
TGACCTAATGCAAGAGGAGGGCCTCATGCCGCTCCTGTTGGTGGATGAGG
GCGTCAAAGAGCAGGAAGGGGAGGAGGAAGAAGTAGGAGAGGCAGAAAAG
CGCAAGCATGTGGAAGGCGATCGGGCACAGAAAAAACACAAGGGCCTGCA
TACGGAGACTTTGTTAGCAGGCTTGGCGATGGAGCATCAGCAGCATGGAG
AGGATGAGAAGCAACGGGACGGCCATTTGAAGATGACGAGATCTGTCTCG
TCGCCGTCGCCCTTCCTACAGCCTCAAGCTTTGCAATCGCCCCCATCCAA
CCCACACCAGAAACGCGATGTTTCTATAGGAAGGTCCCATGTACGTATAT
TGTACGCACGGTCGGTCGTTTTGGCAAAAAAATCTCAGTACTTTGACCGG
GCTTTTCGGAGGGGGGGGTTTCGGGAGATGGGTGAACGGCAACTAGAGTT
GAATTTTGACGATGAAGAAGAGTTTGATGATTTCGCCCGATTAATTCGCT
TGTGCCATGGTCCTAGCTTTACGAGCGAGGCGGTGGGTACTGATGGTGGT
GGTTTGTGTAATGGTAGTATGGAAGGGGGAGGAGGAGGAGGAGAAGGAGG
GGCGGCGGGAAGGCGACGGGAGCTACGGAGGGAGGAACTGCTGAGGTTGG
TGTTGGTAGCAGACGCATTTGAAGTTGTGCAGTGTGTGGAGGAGGGGGTG
ATGGCGCTGTGTGCTCGGATGGGATATACCCTGGCCATGAAAACGTTCCA
GAGGGTGCCGGACGGACTGAGGAATCATGAGGCGATTCGCAGGCTCTTGC
TGGCGGCGGGGGAGGCCTTGGCAAAAGGGATCGGCGTATTGGCAGGGCCT
AAAATATGGTCCAGGAGGAGGCCAGACGTCTCGAGGGGGGGAAAGGACAA
GTATGTTAGGTTCTTGCCTGACCTCCAAGGGAGACTGCAGCAGTTGCCAT
TGATGGCCATTGATTTTTTGGTCAGGTCCCCGGCGTTGCGGTTGAAAAGT
GAAAATGACGCGTTTGCATTTGTGTGTGCTTGGCTGAAGGGGAAGCAGGG
AGGGGAGGGAGGGGGAGGGGGGGGATGGAGCAAGAGTCAGACGCAGCGGG
CGTTTAATTCGCTGATGTCGGGCTTGAGGTGGCATGCGATGACGAGCGAA
TTCTTAGCGACGGTTGTGAGTCAGAGCAGATGGGTGGGGCAGAGCGGGCG
TCTCCTTGATATCCTAAGAAGTGCCTTGTGCTTCCGTGACTCAACCTCCC
ATATCCGTCGTTTTGTCGTGCACCAGGCCGCGACCCAGCATGCGGAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACATGGGCAGCAGCAGCA
GCAGGCCGAGGGCGAGGAAGGAGGTGGAGAAGATGGGGGAGAGGGGGAGC
GGACGGCCAAAAGGGCGGCGCTGAAGGCTTTTGACAGCAGGGGAGAGGAT
GATGAGGATGAGCTGTATGTGTTGAAAGGGACGTTTTCCCTGCACAAGTG
CTTAAGCCTTCCTCCTGGAAAATTTATTCGACGATACTTGGGGATAGTTC
AGGGATTGCCTTGCTTTCTGGATCTGGAGAGGTCGGTGTTGGAAGGAGGA
GATGGAGGAGGAGGAGGAGGAGGAGTAGGGGGTAGGGAGACCTTGGGTTT
GTTTTTGGGGATATGCAATTCAGGGAATGACCGGGGAGGTGCAGGATTAT
GCGAAGAGGGAGGGAGTAATGGTAGTGGCAGAAGTAATGGAGGGAAAACA
AGGGATGGGTTGAGTACGCCTGTGTTGCCGGTAGGGTGTTTGGTGAGATA
TGACATAAGTGTTGGGTCTGTGACGCGTGGACCCAGTATTGATATATTTG
CGAATGCCAAGCAGCCGTGGGGGTATCGTGATGTGCTTTCCAAGGGATGG
GGGGAGGTCGTGAGGGAGGGAAGTCCTCATTTTGATCGGCAGGGACGATT
GGAGGTTATGGCCCGGGTGAGGTTCTTGAGAGATGGCAGGGTGACAACGG
TTATGGAAGAGGAAGATGAGGAGGATGATGACAGTTCGGATGAGGAGGAG
GAGGATGGAATGATAGAGGAGGAAGAGGAGGAGGAGGAAGAAGAGGAGGA
AGAAGACGATGACGAGGAGGAGGAGGAAGATGAAGGGCTTGGAATCATGA
TGCAGGGAGGCGGAGAGGATGTCGTGCAGGAGGGGACAGGGTTCGCGATG
GGTGGGCATGAAGCGGGAGGAGAAGGAGAAGGAGGAGGATTGGGAGGACG
AGAGGGTGGCGCGCCGGGGTGGGCATTTGGTTTTTCTGATGCTGACTCGA
GTGACTCGAGTCCGGATGCTTAAACACCTGAAGGAGGGAAGGGGGCGAGG
AAAGGAAGGCGGAAGGGAGGACGGCGGAAGAAAAAGTTTCGCCGTGTACA
TAATTTGAGTACAAAAAGAAAGAGGACTTGAACGTGCTCACGGTCGGTCT
CAGCAAGCGCAAATGCAAGCGGGCATTATCAAGACAAACAAGACCAGATA
CCGAATAAGACAGGGGTTAAGCAGTGAGAATGCGGGTCTGACAAAACGAA
CATAGAAGAACGAAGAGTGAGATGAGACGATGACAAGCACGGAGAGTG

Coding sequence (CDS) from alignment at scaffold_14:364239..367186+

>mRNA_6033 ID=mRNA_6033|Name=jgi.p|Nanoce1779_2|80491|organism=Nannochloropsis oceanica|type=CDS|length=2568bp|location=Sequence derived from alignment at scaffold_14:364239..367186+ (Nannochloropsis oceanica)
ATGAAGCGAGAACGGAGCTTCTCGGCATCGTCCTCGGTAAGCACAGTTAC
AACCCTGGCAGCGGATGAGACTGAAGAGGAGGAAGCGGGGGATACAGAAG
GGGAGGACTCGGAGGGCACCACAGGAGCAGTGGTAGCAGCAGCAACAGTG
GTGGTAGGAACTGAAGCAGGGTTGGCGAGATCAACAGCGACGGCCGCTGT
AGCAGGACAGGAGGGTGTGAGGCCTTTGAGCGACAAAAATCAGCATGACC
TAATGCAAGAGGAGGGCCTCATGCCGCTCCTGTTGGTGGATGAGGGCGTC
AAAGAGCAGGAAGGGGAGGAGGAAGAAGTAGGAGAGGCAGAAAAGCGCAA
GCATGTGGAAGGCGATCGGGCACAGAAAAAACACAAGGGCCTGCATACGG
AGACTTTGTTAGCAGGCTTGGCGATGGAGCATCAGCAGCATGGAGAGGAT
GAGAAGCAACGGGACGGCCATTTGAAGATGACGAGATCTGTCTCGTCGCC
GTCGCCCTTCCTACAGCCTCAAGCTTTGCAATCGCCCCCATCCAACCCAC
ACCAGAAACGCGATGTTTCTATAGGAAGGTCCCATGTACGTATATTGTAC
GCACGGTCGGTCGTTTTGGCAAAAAAATCTCAGTACTTTGACCGGGCTTT
TCGGAGGGGGGGGTTTCGGGAGATGGGTGAACGGCAACTAGAGTTGAATT
TTGACGATGAAGAAGAGTTTGATGATTTCGCCCGATTAATTCGCTTGTGC
CATGGTCCTAGCTTTACGAGCGAGGCGGTGGGTACTGATGGTGGTGGTTT
GTGTAATGGTAGTATGGAAGGGGGAGGAGGAGGAGGAGAAGGAGGGGCGG
CGGGAAGGCGACGGGAGCTACGGAGGGAGGAACTGCTGAGGTTGGTGTTG
GTAGCAGACGCATTTGAAGTTGTGCAGTGTGTGGAGGAGGGGGTGATGGC
GCTGTGTGCTCGGATGGGATATACCCTGGCCATGAAAACGTTCCAGAGGG
TGCCGGACGGACTGAGGAATCATGAGGCGATTCGCAGGCTCTTGCTGGCG
GCGGGGGAGGCCTTGGCAAAAGGGATCGGCGTATTGGCAGGGCCTAAAAT
ATGGTCCAGGAGGAGGCCAGACGTCTCGAGGGGGGGAAAGGACAAGTATG
TTAGGTTCTTGCCTGACCTCCAAGGGAGACTGCAGCAGTTGCCATTGATG
GCCATTGATTTTTTGGTCAGGTCCCCGGCGTTGCGGTTGAAAAGTGAAAA
TGACGCGTTTGCATTTGTGTGTGCTTGGCTGAAGGGGAAGCAGGGAGGGG
AGGGAGGGGGAGGGGGGGGATGGAGCAAGAGTCAGACGCAGCGGGCGTTT
AATTCGCTGATGTCGGGCTTGAGGTGGCATGCGATGACGAGCGAATTCTT
AGCGACGGTTGTGAGTCAGAGCAGATGGGTGGGGCAGAGCGGGCGTCTCC
TTGATATCCTAAGAAGTGCCTTGTGCTTCCGTGACTCAACCTCCCATATC
CGTCGTTTTGTCGTGCACCAGGCCGCGACCCAGCATGCGGAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCACATGGGCAGCAGCAGCAGCAGG
CCGAGGGCGAGGAAGGAGGTGGAGAAGATGGGGGAGAGGGGGAGCGGACG
GCCAAAAGGGCGGCGCTGAAGGCTTTTGACAGCAGGGGAGAGGATGATGA
GGATGAGCTGTATGTGTTGAAAGGGACGTTTTCCCTGCACAAGTGCTTAA
GCCTTCCTCCTGGAAAATTTATTCGACGATACTTGGGGATAGTTCAGGGA
TTGCCTTGCTTTCTGGATCTGGAGAGGTCGGTGTTGGAAGGAGGAGATGG
AGGAGGAGGAGGAGGAGGAGTAGGGGGTAGGGAGACCTTGGGTTTGTTTT
TGGGGATATGCAATTCAGGGAATGACCGGGGAGGTGCAGGATTATGCGAA
GAGGGAGGGAGTAATGGTAGTGGCAGAAGTAATGGAGGGAAAACAAGGGA
TGGGTTGAGTACGCCTGTGTTGCCGGTAGGGTGTTTGGTGAGATATGACA
TAAGTGTTGGGTCTGTGACGCGTGGACCCAGTATTGATATATTTGCGAAT
GCCAAGCAGCCGTGGGGGTATCGTGATGTGCTTTCCAAGGGATGGGGGGA
GGTCGTGAGGGAGGGAAGTCCTCATTTTGATCGGCAGGGACGATTGGAGG
TTATGGCCCGGGTGAGGTTCTTGAGAGATGGCAGGGTGACAACGGTTATG
GAAGAGGAAGATGAGGAGGATGATGACAGTTCGGATGAGGAGGAGGAGGA
TGGAATGATAGAGGAGGAAGAGGAGGAGGAGGAAGAAGAGGAGGAAGAAG
ACGATGACGAGGAGGAGGAGGAAGATGAAGGGCTTGGAATCATGATGCAG
GGAGGCGGAGAGGATGTCGTGCAGGAGGGGACAGGGTTCGCGATGGGTGG
GCATGAAGCGGGAGGAGAAGGAGAAGGAGGAGGATTGGGAGGACGAGAGG
GTGGCGCGCCGGGGTGGGCATTTGGTTTTTCTGATGCTGACTCGAGTGAC
TCGAGTCCGGATGCTTAA

Synonyms

Publications