jgi.p|Nanoce1779_2|556854, mRNA_6032 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556854
Unique NamemRNA_6032
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1553
Alignment locationscaffold_14:361899..363536 -

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Properties
Property NameValue
TranscriptId556940
TrackFilteredModels2
ProteinId556854
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:361899..363536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556854gene_6032Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556854mRNA_6032-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6032CDS_6032Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6032 ID=mRNA_6032|Name=jgi.p|Nanoce1779_2|556854|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
CCAAAATCGTACATTTCGACTCAACTCTCACCTAATTCTATCACCCATAC
ACACATACATACATACATACATACATACTATCCGAACACCGCAGGCAATG
AGTGCCGGAGGAGGATTGGCCAGGGTAGAGGCACCTTCTACTGCTCCAGC
AGGACCAACAACGCAAGTTGAGTGCTTGCTTCTTCGCCTAGGAGGAAACT
TCCCAGCCGAGGTGGGCAGGCTTGCAAACCAGTTGCTTCGGAAACTGGCC
GTCAAGTGTAAGCCGGGAAGCCTGGGAAAGTTTGAGGTATGCCGGCCGGC
GGTGTGTGTTGAACTGGCTTGTCGACAATGCGGGTATTTGAGTGTCTCTC
GGGACTCGTTGGTGCAGCAGAGCATGGTCAAGGAGGCCATGTACCGGGAC
GTCTTTCGCCGGGTGGAGCAAGCCCTTAGCTTGACGAGTGCCTGGAGCGT
GCCGCAGTTAGCCATGGTATTGGGAGGCGAGCAAGCTGTTAAGCTAGCCG
AATGCATATTGTCGGAGTACCAGAAGCGCTACAACAATTCCTTGCAGGAC
GGGGGCCGGGGGGGCGGCCAGGCGCGGCCCTTTGCTCAGCAGTCCTTGTA
CGTGGTAGCTGCATTTTTCCTGGCCACCAAGAAGCTCAAGATCAAGATTG
ACAAGAAGAAGCTGTTGGACAGGGCCAGTGCCCCAACTCAGGAACTTACC
GCTGTTTGCACTTCCATGCAAGAGATGTGCGCAGACCTCGTAGGTCCGAG
TACAACAGGAGGCCGACGTTCCTCCATCATAAGCATAGATCGGAGCGCCC
CATCTTCTTATTCTTATTCTAATTCCTCCGCCAAGACCAAGAAACGAGGA
GTAGCAGGGGAGGAAAGAAGAGGGGAGGATGAATTCCTCGTCTTTCAAAA
TCAAAGCCAAGACTCGGCTGCGCGACAGTCGCAGCAATCATCCTCTTTGG
CGCCCAGCGAGGCATCAGTCACCTCCTCGTCTTTCCATTCCTCACGGGCC
GCTGTCGATGTGGTAGGGGGATCAGCACAAAAGTGGGCCCGTCTCAGCCC
CAGCACCACTATCCGCCCTCCTGCACCAGCACTAGAAGGAACAGCAGCAC
CAGCACTACAAGTGCGCGCCATTTCAATCCTGAACCGTAAGTCCTCCATA
CTAGGAGGGTCGGCTGGTGGTATCCAGTCCGTCGGTGAAGGGGGTAGGAG
TGAACCGCAACTACCAACACCTGCTACAGCATCCACAGTCGTCGTACCAC
CCCGGAGGCTGTCCTTCAAGAACGAGGAAGAGAAGTCAATATACGAACAG
TGGAAACGGACTGTGCTCGCAGCGGCCATCAAGAAATCGCGGCAAAGTGT
AGTGGGCAATGGAGTGGTCAAGGAAAGCAACATCCCAACCAGCACATCTC
AGCAGCAACACAGCAAAAAAAAACAGATTTGATCAAGTCGACAGTAGAGC
AGACAGCACATCAAAATTGCGTATGGCACTGTGCACAACAAAGACGACAA
GATGTGTCACCAAATACGCATAATCATGTTCTAGAAAGCAAAGAAAATAC
CAC
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protein sequence of jgi.p|Nanoce1779_2|556854

>mRNA_6032-protein ID=mRNA_6032-protein|Name=jgi.p|Nanoce1779_2|556854|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MSAGGGLARVEAPSTAPAGPTTQVECLLLRLGGNFPAEVGRLANQLLRKL
AVKCKPGSLGKFEVCRPAVCVELACRQCGYLSVSRDSLVQQSMVKEAMYR
DVFRRVEQALSLTSAWSVPQLAMVLGGEQAVKLAECILSEYQKRYNNSLQ
DGGRGGGQARPFAQQSLYVVAAFFLATKKLKIKIDKKKLLDRASAPTQEL
TAVCTSMQEMCADLVGPSTTGGRRSSIISIDRSAPSSYSYSNSSAKTKKR
GVAGEERRGEDEFLVFQNQSQDSAARQSQQSSSLAPSEASVTSSSFHSSR
AAVDVVGGSAQKWARLSPSTTIRPPAPALEGTAAPALQVRAISILNRKSS
ILGGSAGGIQSVGEGGRSEPQLPTPATASTVVVPPRRLSFKNEEEKSIYE
QWKRTVLAAAIKKSRQSVVGNGVVKESNIPTSTSQQQHSKKKQI*
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mRNA from alignment at scaffold_14:361899..363536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6032 ID=mRNA_6032|Name=jgi.p|Nanoce1779_2|556854|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp|location=Sequence derived from alignment at scaffold_14:361899..363536- (Nannochloropsis oceanica)
CCAAAATCGTACATTTCGACTCAACTCTCACCTAATTCTATCACCCATAC
ACACATACATACATACATACATACATACTATCCGAACACCGCAGGCAATG
AGTGCCGGAGGAGGATTGGCCAGGGTAGAGGCACCTTCTACTGCTCCAGC
AGGACCAACAACGCAAGTTGAGTGCTTGCTTCTTCGCCTAGGAGGAAACT
TCCCAGCCGAGGTGGGCAGGCTTGCAAACCAGTTGCTTCGGAAACTGGCC
GTCAAGTGTAAGCCGGGAAGCCTGGGAAAGTTTGAGGTATGCCGGCCGGC
GGTGTGTGTTGAACTGGCTTGTCGACAATGCGGGTATTTGAGTGTCTCTC
GGGACTCGTTGGTGCAGCAGAGCATGGTCAAGGAGGCCATGTACCGGGAC
GTCTTTCGCCGGGTGGAGCAAGCCCTTAGCTTGACGAGTGCCTGGAGCGT
GCCGCAGTTAGCCATGGTATTGGGAGGCGAGCAAGCTGTTAAGCTAGCCG
AATGCATATTGTCGGAGTACCAGAAGCGCTACAACAATTCCTTGCAGGAC
GGGGGCCGGGGGGGCGGCCAGGCGCGGCCCTTTGCTCAGCAGTCCTTGTA
CGTGGTAGCTGCATTTTTCCTGGCCACCAAGAAGCTCAAGGTAAGAAAAT
TGATACTTCCGGCATCTACGGGAAACGAATTTAACGTCTGTCTTACTTAA
TTTTTGTTCTCATCTCGACGCACAGATCAAGATTGACAAGAAGAAGCTGT
TGGACAGGGCCAGTGCCCCAACTCAGGAACTTACCGCTGTTTGCACTTCC
ATGCAAGAGATGTGCGCAGACCTCGTAGGTCCGAGTACAACAGGAGGCCG
ACGTTCCTCCATCATAAGCATAGATCGGAGCGCCCCATCTTCTTATTCTT
ATTCTAATTCCTCCGCCAAGACCAAGAAACGAGGAGTAGCAGGGGAGGAA
AGAAGAGGGGAGGATGAATTCCTCGTCTTTCAAAATCAAAGCCAAGACTC
GGCTGCGCGACAGTCGCAGCAATCATCCTCTTTGGCGCCCAGCGAGGCAT
CAGTCACCTCCTCGTCTTTCCATTCCTCACGGGCCGCTGTCGATGTGGTA
GGGGGATCAGCACAAAAGTGGGCCCGTCTCAGCCCCAGCACCACTATCCG
CCCTCCTGCACCAGCACTAGAAGGAACAGCAGCACCAGCACTACAAGTGC
GCGCCATTTCAATCCTGAACCGTAAGTCCTCCATACTAGGAGGGTCGGCT
GGTGGTATCCAGTCCGTCGGTGAAGGGGGTAGGAGTGAACCGCAACTACC
AACACCTGCTACAGCATCCACAGTCGTCGTACCACCCCGGAGGCTGTCCT
TCAAGAACGAGGAAGAGAAGTCAATATACGAACAGTGGAAACGGACTGTG
CTCGCAGCGGCCATCAAGAAATCGCGGCAAAGTGTAGTGGGCAATGGAGT
GGTCAAGGAAAGCAACATCCCAACCAGCACATCTCAGCAGCAACACAGCA
AAAAAAAACAGATTTGATCAAGTCGACAGTAGAGCAGACAGCACATCAAA
ATTGCGTATGGCACTGTGCACAACAAAGACGACAAGATGTGTCACCAAAT
ACGCATAATCATGTTCTAGAAAGCAAAGAAAATACCAC
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Coding sequence (CDS) from alignment at scaffold_14:361899..363536-

>mRNA_6032 ID=mRNA_6032|Name=jgi.p|Nanoce1779_2|556854|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_14:361899..363536- (Nannochloropsis oceanica)
ATCAAGATTGACAAGAAGAAGCTGTTGGACAGGGCCAGTGCCCCAACTCA
GGAACTTACCGCTGTTTGCACTTCCATGCAAGAGATGTGCGCAGACCTCG
TAGGTCCGAGTACAACAGGAGGCCGACGTTCCTCCATCATAAGCATAGAT
CGGAGCGCCCCATCTTCTTATTCTTATTCTAATTCCTCCGCCAAGACCAA
GAAACGAGGAGTAGCAGGGGAGGAAAGAAGAGGGGAGGATGAATTCCTCG
TCTTTCAAAATCAAAGCCAAGACTCGGCTGCGCGACAGTCGCAGCAATCA
TCCTCTTTGGCGCCCAGCGAGGCATCAGTCACCTCCTCGTCTTTCCATTC
CTCACGGGCCGCTGTCGATGTGGTAGGGGGATCAGCACAAAAGTGGGCCC
GTCTCAGCCCCAGCACCACTATCCGCCCTCCTGCACCAGCACTAGAAGGA
ACAGCAGCACCAGCACTACAAGTGCGCGCCATTTCAATCCTGAACCGTAA
GTCCTCCATACTAGGAGGGTCGGCTGGTGGTATCCAGTCCGTCGGTGAAG
GGGGTAGGAGTGAACCGCAACTACCAACACCTGCTACAGCATCCACAGTC
GTCGTACCACCCCGGAGGCTGTCCTTCAAGAACGAGGAAGAGAAGTCAAT
ATACGAACAGTGGAAACGGACTGTGCTCGCAGCGGCCATCAAGAAATCGC
GGCAAAGTGTAGTGGGCAATGGAGTGGTCAAGGAAAGCAACATCCCAACC
AGCACATCTCAGCAGCAACACAGCAAAAAAAAACAGATTTGAATGAGTGC
CGGAGGAGGATTGGCCAGGGTAGAGGCACCTTCTACTGCTCCAGCAGGAC
CAACAACGCAAGTTGAGTGCTTGCTTCTTCGCCTAGGAGGAAACTTCCCA
GCCGAGGTGGGCAGGCTTGCAAACCAGTTGCTTCGGAAACTGGCCGTCAA
GTGTAAGCCGGGAAGCCTGGGAAAGTTTGAGGTATGCCGGCCGGCGGTGT
GTGTTGAACTGGCTTGTCGACAATGCGGGTATTTGAGTGTCTCTCGGGAC
TCGTTGGTGCAGCAGAGCATGGTCAAGGAGGCCATGTACCGGGACGTCTT
TCGCCGGGTGGAGCAAGCCCTTAGCTTGACGAGTGCCTGGAGCGTGCCGC
AGTTAGCCATGGTATTGGGAGGCGAGCAAGCTGTTAAGCTAGCCGAATGC
ATATTGTCGGAGTACCAGAAGCGCTACAACAATTCCTTGCAGGACGGGGG
CCGGGGGGGCGGCCAGGCGCGGCCCTTTGCTCAGCAGTCCTTGTACGTGG
TAGCTGCATTTTTCCTGGCCACCAAGAAGCTCAAGATCAAGATTGACAAG
AAGAAGCTGTTGGACAGGGCCAGTGCCCCAACTCAGGAACTTACCGCTGT
TTGCACTTCCATGCAAGAGATGTGCGCAGACCTCGTAGGTCCGAGTACAA
CAGGAGGCCGACGTTCCTCCATCATAAGCATAGATCGGAGCGCCCCATCT
TCTTATTCTTATTCTAATTCCTCCGCCAAGACCAAGAAACGAGGAGTAGC
AGGGGAGGAAAGAAGAGGGGAGGATGAATTCCTCGTCTTTCAAAATCAAA
GCCAAGACTCGGCTGCGCGACAGTCGCAGCAATCATCCTCTTTGGCGCCC
AGCGAGGCATCAGTCACCTCCTCGTCTTTCCATTCCTCACGGGCCGCTGT
CGATGTGGTAGGGGGATCAGCACAAAAGTGGGCCCGTCTCAGCCCCAGCA
CCACTATCCGCCCTCCTGCACCAGCACTAGAAGGAACAGCAGCACCAGCA
CTACAAGTGCGCGCCATTTCAATCCTGAACCGTAAGTCCTCCATACTAGG
AGGGTCGGCTGGTGGTATCCAGTCCGTCGGTGAAGGGGGTAGGAGTGAAC
CGCAACTACCAACACCTGCTACAGCATCCACAGTCGTCGTACCACCCCGG
AGGCTGTCCTTCAAGAACGAGGAAGAGAAGTCAATATACGAACAGTGGAA
ACGGACTGTGCTCGCAGCGGCCATCAAGAAATCGCGGCAAAGTGTAGTGG
GCAATGGAGTGGTCAAGGAAAGCAACATCCCAACCAGCACATCTCAGCAG
CAACACAGCAAAAAAAAACAGATTTGAATGAGTGCCGGAGGAGGATTGGC
CAGGGTAGAGGCACCTTCTACTGCTCCAGCAGGACCAACAACGCAAGTTG
AGTGCTTGCTTCTTCGCCTAGGAGGAAACTTCCCAGCCGAGGTGGGCAGG
CTTGCAAACCAGTTGCTTCGGAAACTGGCCGTCAAGTGTAAGCCGGGAAG
CCTGGGAAAGTTTGAGGTATGCCGGCCGGCGGTGTGTGTTGAACTGGCTT
GTCGACAATGCGGGTATTTGAGTGTCTCTCGGGACTCGTTGGTGCAGCAG
AGCATGGTCAAGGAGGCCATGTACCGGGACGTCTTTCGCCGGGTGGAGCA
AGCCCTTAGCTTGACGAGTGCCTGGAGCGTGCCGCAGTTAGCCATGGTAT
TGGGAGGCGAGCAAGCTGTTAAGCTAGCCGAATGCATATTGTCGGAGTAC
CAGAAGCGCTACAACAATTCCTTGCAGGACGGGGGCCGGGGGGGCGGCCA
GGCGCGGCCCTTTGCTCAGCAGTCCTTGTACGTGGTAGCTGCATTTTTCC
TGGCCACCAAGAAGCTCAAG
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Synonyms
Publications