jgi.p|Nanoce1779_2|577905, mRNA_603 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577905
Unique NamemRNA_603
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length693
Alignment locationscaffold_3:1509830..1510522 -

Link to JBrowse

Properties
Property NameValue
TranscriptId577991
TrackFilteredModels2
ProteinId577905
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1509830..1510522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577905gene_603Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577905mRNA_603-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_603CDS_603Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_603 ID=mRNA_603|Name=jgi.p|Nanoce1779_2|577905|organism=Nannochloropsis oceanica|type=mRNA|length=693bp
CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCCTCTCTCTTTCCCTCTCC
TTCTTTCACCCTCTCTCATTCTCTTCCTCTCTAGTCCTCTGACTCATTTA
TGTTCCACAGCTCCTTTGTTCAGCATTTCCTTTGTTCTACCGCTCTCTCG
TTCTATACACGTCTTCTCGTCCTACACACGCACGCGGCGGATATAGAACA
CTCCCAGCTACGCACCCACCCACCCACCGAGGTATTTCGCTTCATGTCAA
CGGGTGGTGGCTCGGTCCTGTGGCGGAAAGCCTCATCATCAAGAGATATG
CCTAGTCATCCGCATATCCCTACCTCGCCTTGGGGGTGAAGGAGGGACAA
GCCTAAACGGACGCCCGTTACTCTACGCCGCCGTTTCTCTCGTCTCTCTC
TCTCTAGTCCTTCCCCTTCCCTCCTCCCCTTCTTGTCCTTTCTACAAATT
CCTTCTTTCTCTCCTCCATCACCGACCATCTCTACCGTCTTCCGATTCCT
GTCCTCATTCTCTTGCGTGCTGATTTGTTCTTACGCAATCATTCCATATT
CGCAGTGTTGTTCATCTTTGCCGGTGGTCTTTCTACATTCTTCTGGATCT
TTCTAGATTATCCCAAACTTCCAAATCCTTTGGAGGGTTTGGCATTTTCG
CACACCACCTCGTCATTCCCTCGCGTCCCTCCCTCCTCCCTCC
back to top

protein sequence of jgi.p|Nanoce1779_2|577905

>mRNA_603-protein ID=mRNA_603-protein|Name=jgi.p|Nanoce1779_2|577905|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MFHSSFVQHFLCSTALSFYTRLLVLHTHAADIEHSQLRTHPPTEVFRFMS
TGGGSVLWRKASSSRDMPSHPHIPTSPWG*
back to top

mRNA from alignment at scaffold_3:1509830..1510522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_603 ID=mRNA_603|Name=jgi.p|Nanoce1779_2|577905|organism=Nannochloropsis oceanica|type=mRNA|length=693bp|location=Sequence derived from alignment at scaffold_3:1509830..1510522- (Nannochloropsis oceanica)
CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCCTCTCTCTTTCCCTCTCC
TTCTTTCACCCTCTCTCATTCTCTTCCTCTCTAGTCCTCTGACTCATTTA
TGTTCCACAGCTCCTTTGTTCAGCATTTCCTTTGTTCTACCGCTCTCTCG
TTCTATACACGTCTTCTCGTCCTACACACGCACGCGGCGGATATAGAACA
CTCCCAGCTACGCACCCACCCACCCACCGAGGTATTTCGCTTCATGTCAA
CGGGTGGTGGCTCGGTCCTGTGGCGGAAAGCCTCATCATCAAGAGATATG
CCTAGTCATCCGCATATCCCTACCTCGCCTTGGGGGTGAAGGAGGGACAA
GCCTAAACGGACGCCCGTTACTCTACGCCGCCGTTTCTCTCGTCTCTCTC
TCTCTAGTCCTTCCCCTTCCCTCCTCCCCTTCTTGTCCTTTCTACAAATT
CCTTCTTTCTCTCCTCCATCACCGACCATCTCTACCGTCTTCCGATTCCT
GTCCTCATTCTCTTGCGTGCTGATTTGTTCTTACGCAATCATTCCATATT
CGCAGTGTTGTTCATCTTTGCCGGTGGTCTTTCTACATTCTTCTGGATCT
TTCTAGATTATCCCAAACTTCCAAATCCTTTGGAGGGTTTGGCATTTTCG
CACACCACCTCGTCATTCCCTCGCGTCCCTCCCTCCTCCCTCC
back to top

Coding sequence (CDS) from alignment at scaffold_3:1509830..1510522-

>mRNA_603 ID=mRNA_603|Name=jgi.p|Nanoce1779_2|577905|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_3:1509830..1510522- (Nannochloropsis oceanica)
ATGTTCCACAGCTCCTTTGTTCAGCATTTCCTTTGTTCTACCGCTCTCTC
GTTCTATACACGTCTTCTCGTCCTACACACGCACGCGGCGGATATAGAAC
ACTCCCAGCTACGCACCCACCCACCCACCGAGGTATTTCGCTTCATGTCA
ACGGGTGGTGGCTCGGTCCTGTGGCGGAAAGCCTCATCATCAAGAGATAT
GCCTAGTCATCCGCATATCCCTACCTCGCCTTGGGGGTGA
back to top
Synonyms
Publications