jgi.p|Nanoce1779_2|593534, mRNA_6029 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593534
Unique NamemRNA_6029
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length685
Alignment locationscaffold_14:358461..359524 +

Link to JBrowse

Properties
Property NameValue
TranscriptId593620
TrackFilteredModels2
ProteinId593534
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:358461..359524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593534gene_6029Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593534mRNA_6029-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6029CDS_6029Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6029 ID=mRNA_6029|Name=jgi.p|Nanoce1779_2|593534|organism=Nannochloropsis oceanica|type=mRNA|length=685bp
CAGTACACAACCATGGCCACCACGGAGACCAAGCCGGCGGCGAAGGACGA
TGCTGCGCCGTTACTGGACGTATTGGAAGAGGACGACGAGTTTGAGGAAT
TTGCCGACCCAGACTGGGACGCGGCCGTCGACGAGGCTCAAGACGAGCAG
CAGTGGCAGGACGACTGGGACGACGACAAGGCGGACGACGACTTTTCCCG
ACACCTTCGTCAGGAGCTCCAAAAGCAACAAAGTTAAGCCTCAAACCAGT
CTCTAGAGACAAAATTGAGCCCCATTGTGAAGACGTGGGGAGGAAGGCAG
AAAGGAGGGAAGGCCCCGGGGGAAGGATATAAGCATGGTTGGTTGAGTGA
AGCTTGGCTATCATGGCTGGCGTGGAAAAATAAATATTCAGAGAGTCAAG
GGATGAAAAGTGAGGGTAAGAGTGACAGCTGTGGAGGAGGGGGGGAGTTG
GGGAAGGATGTACCAAAATAAAAAGAACAAAATTGAGAACAGCGAGAAAT
GGATGAGCATTCGGACGATGCATGTTCGTCTCACCATGCTAGTCTTGTTC
TGTTTGTACTCTGTTTCGTCATTACTTGACATATACAAGTTGGGTGCAAA
GAGATGGGATGGGGGAGATTAAGGGGCGTGATGGGGAGACGGAAGGGAAA
GAGGGAGGGAGGGAGGAAAGGTGACACCCGTGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|593534

>mRNA_6029-protein ID=mRNA_6029-protein|Name=jgi.p|Nanoce1779_2|593534|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MATTETKPAAKDDAAPLLDVLEEDDEFEEFADPDWDAAVDEAQDEQQWQD
DWDDDKADDDFSRHLRQELQKQQS*
back to top

mRNA from alignment at scaffold_14:358461..359524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6029 ID=mRNA_6029|Name=jgi.p|Nanoce1779_2|593534|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp|location=Sequence derived from alignment at scaffold_14:358461..359524+ (Nannochloropsis oceanica)
CAGTACACAACCATGGCCACCACGGAGACCAAGCCGGCGGCGAAGGACGA
TGCTGCGCCGTTACTGGACGTATTGGAAGAGGACGACGAGTTTGAGGTAC
GTATGGCACGATGGAGATGTCGGGTGGTGAGAATGCGGAGGTGGAAGACA
GGGAACCCCTTTGCCCAAGCTGCGCGCATAGTGGGGGAAAGTATTTGCGA
TATGGAATCAATCACTTCGTGTCCTACTTTACGATAGTTCCTCCACATTT
TATTCTACACCATTTTGGTCCATCCCGTTTACCGCAACAGGAATTTGCCG
ACCCAGACTGGGACGCGGCCGTCGACGAGGCTCAAGACGAGCAGCAGTGG
CAGGTACGTCATGTGCAAGGCAATGATTCTTTTCAACCCCGCAAAAAAAG
CTGAAGCGTTTTGAAGTGCAAACATGTTCCCATCTGTCCCTCGTTTTGAC
AGTCCCCTTATATTTTCCTGAATGTCAAGATGAAAACCGCATCCCTCCCT
CCCCCTCGCTCGTCTTTTCCCCCGCTCCCATCACAAAGGACGACTGGGAC
GACGACAAGGCGGACGACGACTTTTCCCGACACCTTCGTCAGGAGCTCCA
AAAGCAACAAAGTTAAGCCTCAAACCAGTCTCTAGAGACAAAATTGAGCC
CCATTGTGAAGACGTGGGGAGGAAGGCAGAAAGGAGGGAAGGCCCCGGGG
GAAGGATATAAGCATGGTTGGTTGAGTGAAGCTTGGCTATCATGGCTGGC
GTGGAAAAATAAATATTCAGAGAGTCAAGGGATGAAAAGTGAGGGTAAGA
GTGACAGCTGTGGAGGAGGGGGGGAGTTGGGGAAGGATGTACCAAAATAA
AAAGAACAAAATTGAGAACAGCGAGAAATGGATGAGCATTCGGACGATGC
ATGTTCGTCTCACCATGCTAGTCTTGTTCTGTTTGTACTCTGTTTCGTCA
TTACTTGACATATACAAGTTGGGTGCAAAGAGATGGGATGGGGGAGATTA
AGGGGCGTGATGGGGAGACGGAAGGGAAAGAGGGAGGGAGGGAGGAAAGG
TGACACCCGTGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_14:358461..359524+

>mRNA_6029 ID=mRNA_6029|Name=jgi.p|Nanoce1779_2|593534|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_14:358461..359524+ (Nannochloropsis oceanica)
ATGGCCACCACGGAGACCAAGCCGGCGGCGAAGGACGATGCTGCGCCGTT
ACTGGACGTATTGGAAGAGGACGACGAGTTTGAGGAATTTGCCGACCCAG
ACTGGGACGCGGCCGTCGACGAGGCTCAAGACGAGCAGCAGTGGCAGGAC
GACTGGGACGACGACAAGGCGGACGACGACTTTTCCCGACACCTTCGTCA
GGAGCTCCAAAAGCAACAAAGTTAAATGGCCACCACGGAGACCAAGCCGG
CGGCGAAGGACGATGCTGCGCCGTTACTGGACGTATTGGAAGAGGACGAC
GAGTTTGAGGAATTTGCCGACCCAGACTGGGACGCGGCCGTCGACGAGGC
TCAAGACGAGCAGCAGTGGCAGGACGACTGGGACGACGACAAGGCGGACG
ACGACTTTTCCCGACACCTTCGTCAGGAGCTCCAAAAGCAACAAAGTTAA
ATGGCCACCACGGAGACCAAGCCGGCGGCGAAGGACGATGCTGCGCCGTT
ACTGGACGTATTGGAAGAGGACGACGAGTTTGAGGAATTTGCCGACCCAG
ACTGGGACGCGGCCGTCGACGAGGCTCAAGACGAGCAGCAGTGGCAGGAC
GACTGGGACGACGACAAGGCGGACGACGACTTTTCCCGACACCTTCGTCA
GGAGCTCCAAAAGCAACAAAGTTAA
back to top
Synonyms
Publications