jgi.p|Nanoce1779_2|80424, mRNA_6027 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|80424
Unique Name	mRNA_6027
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1849
Alignment location	scaffold_14:351945..353975 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	80510
Track	FilteredModels2
ProteinId	80424

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:351945..353975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|80424	gene_6027	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|80424	mRNA_6027-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6027	CDS_6027	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:351945..353975+
coding sequence from alignment at scaffold_14:351945..353975+

mRNA sequence

>mRNA_6027 ID=mRNA_6027|Name=jgi.p|Nanoce1779_2|80424|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp
AGCGAGGCAGATCTTGGGCGGCTTAAATGCGATTAAGGTCGGCGGCGTTA
CCTGCTGCTTCTATGAGACCTTGGGAGAGGAGGAGAGGGAGGAAGGGAAG
GAGGCGCTGGGAGAGGAGGCGGAGGAGAGGAGGAGTAGGCCTTGATGGCT
GCCCTGGACTGCGAAATGTGCCAAACCACTGAAGGGATGGAAGTAACAAG
GCTAACGCTCGTGGATGACCAACGCCGAGTACTGCTTGACTCGTTCGTCA
AGCCGCACAATCACATTACGGATTACCTGACCAAATATTCAGGGATCACA
CCCGAGATCATGGCCGCCTGCTCCACGACTCTGGAGCAGGTTCAAGTGGC
GCTGCTTCGCCTGGTGCGGGCCGAGACCTTGCTCGTCGGACATTCTCTGG
AGCAGGATCTGATGGTGGTGGGCTTGATTCATTTACGGTGTGCGGATACT
GCGATCCTCTACCCTCATCCCAGGGGCCCGCAGTGCCGTTTTGCGCTGCG
AATGCTTGTGAAGAAGCACCTGGGGCGGGTCATCCAAGACTCGGTTCACG
GACATTGCAGTCGGGAAGACGCCGAGGCGACGTTGGATTTGGTTAAATTG
AAGATCGAGCATGGGCCGGACTTTGGGGTGGAGGGGGAGGAGGGAGGGGA
AGGCAGAGGCGGGGAGGAGGTGCTTGTACGGGGGAAGGAGAATTTTCTGG
AACAGTTGGGGAGTCGGTTTGGGAAGAGGTGTACGCTGCTTGATCAGAGA
GAAACGCTGGTGCGGGTAATTAGGGGCAGTAGTACGAGTGCTGTGGTGTG
TCGGTCGAATGAGGAGGTGGTGGCCAAGGCCAAGGCGCAGGGGAGGCAGG
CGTTGGCACCTCACTTTATGTGGGCGTCGTTGATGGCCGCGCGGCCCTTA
ACGATAGAGAGCTTGGAGGCTCGGAGAAAGAGGAAAGCTCATCATCATCA
GCAGCAGCGGATGGAGGCTGAGGCGACAGAGGCCGCGGCAGCAGCAGCGG
TGTTGGAGGAGGAGGCGGCTACGGAGAGGGACAGAGGGAGAAAGGGAAAG
AAGCGGAAGGGAGATGTGATTAGCTTGATGAGTCGAAATGGAAGCAGCAG
TAGTTTAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGTAGTTGGCGTTCGG
CTGCCACCTTGACGAACAGCAGTAGCAGCAGCCGGATGACGACGACGACA
ACGACAAGCCTTTGCGAGGCTACGACCACTACAACTCTCACCCTCACATC
CTCGGCAACAACAACAGCGATGACAGCTCGACAACATAAACGATTCCTCT
ATCAGGAGTCGATCATGGAGATGGTTGAGCCAGACCTTCTGCGCGTCGAC
CAGCAACTGGCAGAGCTCCACGATTCCCTCCCCACCAACACCCTCCTCTT
CGTCCTCGCCCAACCCGACGTGGCCCTCCCCACTCAACTCACACACCAAC
GACGCGTAGCCTTGCATTCGCGCAGAGCCACCCTACCATGGACGGAAGAA
CATGAAGCGACGCTGGAGGAGCTGGCAAAGGCAGCACAGAAGGGGGTGGT
GATGATGCGGGTGCGTTGAAAAGAACAGGGAGAGGGAGGGCAGGGATGGA
AGGGAGGAGAGATGGTACGGGATAGGACGTTGTGATAAAATGACTAGACT
GCGTGTTTTGTTTGTAAATATTTGCGAGAAAGCGGAGAAAAGCAAGGTAC
TGAATGGGATGCAGGAGGAAAAACTTTAAGGGAAAGGGAGGAGGAAAAGG
AATGTGCTCTCTTACCCTCTCTCTTCCTTTCAAAGTCAAGGCACTTTTAA
AGTACAGCCAAACAATGTGGAACTAAACGTAACATAGATCGTTCTTCTT

protein sequence of jgi.p|Nanoce1779_2|80424

>mRNA_6027-protein ID=mRNA_6027-protein|Name=jgi.p|Nanoce1779_2|80424|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSG
ITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCA
DTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLV
KLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLD
QRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMWASLMAAR
PLTIESLEARRKRKAHHHQQQRMEAEATEAAAAAAVLEEEAATERDRGRK
GKKRKGDVISLMSRNGSSSSLSSSSSSSSGSSWRSAATLTNSSSSSRMTT
TTTTSLCEATTTTTLTLTSSATTTAMTARQHKRFLYQESIMEMVEPDLLR
VDQQLAELHDSLPTNTLLFVLAQPDVALPTQLTHQRRVALHSRRATLPWT
EEHEATLEELAKAAQKGVVMMRVR*

mRNA from alignment at scaffold_14:351945..353975+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6027 ID=mRNA_6027|Name=jgi.p|Nanoce1779_2|80424|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp|location=Sequence derived from alignment at scaffold_14:351945..353975+ (Nannochloropsis oceanica)
AGCGAGGCAGATCTTGGGCGGCTTAAATGCGATTAAGGTCGGCGGCGTTA
CCTGCTGCTTCTATGAGACCTTGGGAGAGGAGGAGAGGGAGGAAGGGAAG
GAGGCGCTGGGAGAGGAGGCGGAGGAGAGGAGGAGTAGGCCTTGTGAGTA
GTTTGGGGATTGAGGTTGGGAGGGAGGGAGGGAGGCATATAATATGTCCT
ATGCGCGTGTCATGAATGAAGTAAAACGTGCCTTTTTCTCTTTGTCATTT
CACTGCGACCTATGTTACAACCACTCCAAGTCCCTCATTCCCTCCCTCCC
TCCCTCCCTTTCTGCTTCTAGACAGGATGGCTGCCCTGGACTGCGAAATG
TGCCAAACCACTGAAGGGATGGAAGTAACAAGGCTAACGCTCGTGGATGA
CCAACGCCGAGTACTGCTTGACTCGTTCGTCAAGCCGCACAATCACATTA
CGGATTACCTGACCAAATATTCAGGGATCACACCCGAGATCATGGCCGCC
TGCTCCACGACTCTGGAGCAGGTTCAAGTGGCGCTGCTTCGCCTGGTGCG
GGCCGAGACCTTGCTCGTCGGACATTCTCTGGAGCAGGATCTGATGGTGG
TGGGCTTGATTCATTTACGGTGTGCGGATACTGCGATCCTCTACCCTCAT
CCCAGGGGCCCGCAGTGCCGTTTTGCGCTGCGAATGCTTGTGAAGAAGCA
CCTGGGGCGGGTCATCCAAGACTCGGTTCACGGACATTGCAGTCGGGAAG
ACGCCGAGGCGACGTTGGATTTGGTTAAATTGAAGATCGAGCATGGGCCG
GACTTTGGGGTGGAGGGGGAGGAGGGAGGGGAAGGCAGAGGCGGGGAGGA
GGTGCTTGTACGGGGGAAGGAGAATTTTCTGGAACAGTTGGGGAGTCGGT
TTGGGAAGAGGTGTACGCTGCTTGATCAGAGAGAAACGCTGGTGCGGGTA
ATTAGGGGCAGTAGTACGAGTGCTGTGGTGTGTCGGTCGAATGAGGAGGT
GGTGGCCAAGGCCAAGGCGCAGGGGAGGCAGGCGTTGGCACCTCACTTTA
TGTGGGCGTCGTTGATGGCCGCGCGGCCCTTAACGATAGAGAGCTTGGAG
GCTCGGAGAAAGAGGAAAGCTCATCATCATCAGCAGCAGCGGATGGAGGC
TGAGGCGACAGAGGCCGCGGCAGCAGCAGCGGTGTTGGAGGAGGAGGCGG
CTACGGAGAGGGACAGAGGGAGAAAGGGAAAGAAGCGGAAGGGAGATGTG
ATTAGCTTGATGAGTCGAAATGGAAGCAGCAGTAGTTTAAGCAGCAGCAG
CAGCAGCAGCAGTGGCAGTAGTTGGCGTTCGGCTGCCACCTTGACGAACA
GCAGTAGCAGCAGCCGGATGACGACGACGACAACGACAAGCCTTTGCGAG
GCTACGACCACTACAACTCTCACCCTCACATCCTCGGCAACAACAACAGC
GATGACAGCTCGACAACATAAACGATTCCTCTATCAGGAGTCGATCATGG
AGATGGTTGAGCCAGACCTTCTGCGCGTCGACCAGCAACTGGCAGAGCTC
CACGATTCCCTCCCCACCAACACCCTCCTCTTCGTCCTCGCCCAACCCGA
CGTGGCCCTCCCCACTCAACTCACACACCAACGACGCGTAGCCTTGCATT
CGCGCAGAGCCACCCTACCATGGACGGAAGAACATGAAGCGACGCTGGAG
GAGCTGGCAAAGGCAGCACAGAAGGGGGTGGTGATGATGCGGGTGCGTTG
AAAAGAACAGGGAGAGGGAGGGCAGGGATGGAAGGGAGGAGAGATGGTAC
GGGATAGGACGTTGTGATAAAATGACTAGACTGCGTGTTTTGTTTGTAAA
TATTTGCGAGAAAGCGGAGAAAAGCAAGGTACTGAATGGGATGCAGGAGG
AAAAACTTTAAGGGAAAGGGAGGAGGAAAAGGAATGTGCTCTCTTACCCT
CTCTCTTCCTTTCAAAGTCAAGGCACTTTTAAAGTACAGCCAAACAATGT
GGAACTAAACGTAACATAGATCGTTCTTCTT

Coding sequence (CDS) from alignment at scaffold_14:351945..353975+

>mRNA_6027 ID=mRNA_6027|Name=jgi.p|Nanoce1779_2|80424|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at scaffold_14:351945..353975+ (Nannochloropsis oceanica)
ATGGCTGCCCTGGACTGCGAAATGTGCCAAACCACTGAAGGGATGGAAGT
AACAAGGCTAACGCTCGTGGATGACCAACGCCGAGTACTGCTTGACTCGT
TCGTCAAGCCGCACAATCACATTACGGATTACCTGACCAAATATTCAGGG
ATCACACCCGAGATCATGGCCGCCTGCTCCACGACTCTGGAGCAGGTTCA
AGTGGCGCTGCTTCGCCTGGTGCGGGCCGAGACCTTGCTCGTCGGACATT
CTCTGGAGCAGGATCTGATGGTGGTGGGCTTGATTCATTTACGGTGTGCG
GATACTGCGATCCTCTACCCTCATCCCAGGGGCCCGCAGTGCCGTTTTGC
GCTGCGAATGCTTGTGAAGAAGCACCTGGGGCGGGTCATCCAAGACTCGG
TTCACGGACATTGCAGTCGGGAAGACGCCGAGGCGACGTTGGATTTGGTT
AAATTGAAGATCGAGCATGGGCCGGACTTTGGGGTGGAGGGGGAGGAGGG
AGGGGAAGGCAGAGGCGGGGAGGAGGTGCTTGTACGGGGGAAGGAGAATT
TTCTGGAACAGTTGGGGAGTCGGTTTGGGAAGAGGTGTACGCTGCTTGAT
CAGAGAGAAACGCTGGTGCGGGTAATTAGGGGCAGTAGTACGAGTGCTGT
GGTGTGTCGGTCGAATGAGGAGGTGGTGGCCAAGGCCAAGGCGCAGGGGA
GGCAGGCGTTGGCACCTCACTTTATGTGGGCGTCGTTGATGGCCGCGCGG
CCCTTAACGATAGAGAGCTTGGAGGCTCGGAGAAAGAGGAAAGCTCATCA
TCATCAGCAGCAGCGGATGGAGGCTGAGGCGACAGAGGCCGCGGCAGCAG
CAGCGGTGTTGGAGGAGGAGGCGGCTACGGAGAGGGACAGAGGGAGAAAG
GGAAAGAAGCGGAAGGGAGATGTGATTAGCTTGATGAGTCGAAATGGAAG
CAGCAGTAGTTTAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGTAGTTGGC
GTTCGGCTGCCACCTTGACGAACAGCAGTAGCAGCAGCCGGATGACGACG
ACGACAACGACAAGCCTTTGCGAGGCTACGACCACTACAACTCTCACCCT
CACATCCTCGGCAACAACAACAGCGATGACAGCTCGACAACATAAACGAT
TCCTCTATCAGGAGTCGATCATGGAGATGGTTGAGCCAGACCTTCTGCGC
GTCGACCAGCAACTGGCAGAGCTCCACGATTCCCTCCCCACCAACACCCT
CCTCTTCGTCCTCGCCCAACCCGACGTGGCCCTCCCCACTCAACTCACAC
ACCAACGACGCGTAGCCTTGCATTCGCGCAGAGCCACCCTACCATGGACG
GAAGAACATGAAGCGACGCTGGAGGAGCTGGCAAAGGCAGCACAGAAGGG
GGTGGTGATGATGCGGGTGCGTTGA

Synonyms

Publications