jgi.p|Nanoce1779_2|80304, mRNA_6026 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|80304
Unique NamemRNA_6026
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1278
Alignment locationscaffold_14:350758..352035 +

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Properties
Property NameValue
TranscriptId80390
TrackFilteredModels2
ProteinId80304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:350758..352035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|80304gene_6026Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|80304mRNA_6026-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6026CDS_6026Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6026 ID=mRNA_6026|Name=jgi.p|Nanoce1779_2|80304|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
CTACTACTATCATGCAAAACCCAGAGAGGTGTTCGTGCGGATTGCATAGG
AAAACAATCTAATAGCGTGCGTCGCCTCCATCCAAAGCTGTCATGACCTC
GCACCCCCCCGCTGCTGCTGCCTCGGAAGACAGCCCCTCGACGCCATGCC
CAACACTGCCATACGCCGGCAAATATTCAGCAGGAGAAGCCAACGAAGCA
GTATTGGACAAAATGACGCGTCGGAAGCTTAAGAAATTGCGGAAGAAAAT
GCGGAGCGGGCAGCTCTCGTTACACGACACGGAGGAATGCAAGAAGCTTG
GAATTGTGGTGCGGGCCGAGGTGGATTGGAGCGAGGAAATTAAGGATGGC
CGACGGCCTTGCTTGGGCCCGGGGGACTTGCGCCGTGCGATTGTGCACAT
CTTGACGGCTGGTGTCAATGCACATTGCCCGAGTTGGCTGCGGTTGGTGA
ATGCGCGGCTGTTGACGTCTGTGGTGGTGGTGAGCTTGGCAGGGGTGGAA
CCCGCGTACTTGCAAGATAATTTATCACAACTACCTTTTCTGCAAGCATG
CTCGAGGCCAGTGGATTTGCGGTTGTACCATGGACGGCACCCGCGCCGAT
GTATTTATTCCCTCTTGTTTTACCCTCGTCCGAAGCAGGGAGGGAAGGAG
GGAGAAGGAAAATGCGGTGGCGGTGTGGGGGTAGGAAAGAGTGGTATATT
GGAAAGTGAGGAGTCGAAAAAGGGAAGAAAGCGCGGTCGATCGAACGGCG
ACGAATATGATCACGAGGTGGAGGATGGGGAGGAGGAGGGGGAAGGGGAG
GAAGGGGAGGAAGAAGTGGAATGCTTGCCTGAAGATGATGACGTGACTGT
GAGTGTGGATCCGGCAGAGCGATACGTATTGAGTCTTCCTCAATTAAAGC
TGGCCGGATTTCCCTTGCCACCGGGGGGGGTGATTGTACGGGAGCCCCCG
AGTCGAAGCCCGACGGAGAAGGAGGGAGGGCATGGATACCAGGATAATGA
TGAATATGAGGGGGAGGATGGGAAGGACGGGGGGGGAACATGATGATGAC
ATTGGCTGTCTCGTCACTGCTGAAGGGGGGAATATGGAGAGTGGGGCCGG
CATGGAGAAAAAGAGGCGGTGGTTGGACTGTGATGAGGAGGGAAGGTGGG
GAGGAGAGACGGGAGAGCTGCTTCCGCCTTTAGAGGAAGCGAGGCAGATC
TTGGGCGGCTTAAATGCGATTAAGGTCGGCGGCGTTACCTGCTGCTTCTA
TGAGACCTTGGGAGAGGAGGAGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|80304

>mRNA_6026-protein ID=mRNA_6026-protein|Name=jgi.p|Nanoce1779_2|80304|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MTSHPPAAAASEDSPSTPCPTLPYAGKYSAGEANEAVLDKMTRRKLKKLR
KKMRSGQLSLHDTEECKKLGIVVRAEVDWSEEIKDGRRPCLGPGDLRRAI
VHILTAGVNAHCPSWLRLVNARLLTSVVVVSLAGVEPAYLQDNLSQLPFL
QACSRPVDLRLYHGRHPRRCIYSLLFYPRPKQGGKEGEGKCGGGVGVGKS
GILESEESKKGRKRGRSNGDEYDHEVEDGEEEGEGEEGEEEVECLPEDDD
VTVSVDPAERYVLSLPQLKLAGFPLPPGGVIVREPPSRSPTEKEGGHGYQ
DNDEYEGEDGKDGGGT*
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mRNA from alignment at scaffold_14:350758..352035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6026 ID=mRNA_6026|Name=jgi.p|Nanoce1779_2|80304|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_14:350758..352035+ (Nannochloropsis oceanica)
CTACTACTATCATGCAAAACCCAGAGAGGTGTTCGTGCGGATTGCATAGG
AAAACAATCTAATAGCGTGCGTCGCCTCCATCCAAAGCTGTCATGACCTC
GCACCCCCCCGCTGCTGCTGCCTCGGAAGACAGCCCCTCGACGCCATGCC
CAACACTGCCATACGCCGGCAAATATTCAGCAGGAGAAGCCAACGAAGCA
GTATTGGACAAAATGACGCGTCGGAAGCTTAAGAAATTGCGGAAGAAAAT
GCGGAGCGGGCAGCTCTCGTTACACGACACGGAGGAATGCAAGAAGCTTG
GAATTGTGGTGCGGGCCGAGGTGGATTGGAGCGAGGAAATTAAGGATGGC
CGACGGCCTTGCTTGGGCCCGGGGGACTTGCGCCGTGCGATTGTGCACAT
CTTGACGGCTGGTGTCAATGCACATTGCCCGAGTTGGCTGCGGTTGGTGA
ATGCGCGGCTGTTGACGTCTGTGGTGGTGGTGAGCTTGGCAGGGGTGGAA
CCCGCGTACTTGCAAGATAATTTATCACAACTACCTTTTCTGCAAGCATG
CTCGAGGCCAGTGGATTTGCGGTTGTACCATGGACGGCACCCGCGCCGAT
GTATTTATTCCCTCTTGTTTTACCCTCGTCCGAAGCAGGGAGGGAAGGAG
GGAGAAGGAAAATGCGGTGGCGGTGTGGGGGTAGGAAAGAGTGGTATATT
GGAAAGTGAGGAGTCGAAAAAGGGAAGAAAGCGCGGTCGATCGAACGGCG
ACGAATATGATCACGAGGTGGAGGATGGGGAGGAGGAGGGGGAAGGGGAG
GAAGGGGAGGAAGAAGTGGAATGCTTGCCTGAAGATGATGACGTGACTGT
GAGTGTGGATCCGGCAGAGCGATACGTATTGAGTCTTCCTCAATTAAAGC
TGGCCGGATTTCCCTTGCCACCGGGGGGGGTGATTGTACGGGAGCCCCCG
AGTCGAAGCCCGACGGAGAAGGAGGGAGGGCATGGATACCAGGATAATGA
TGAATATGAGGGGGAGGATGGGAAGGACGGGGGGGGAACATGATGATGAC
ATTGGCTGTCTCGTCACTGCTGAAGGGGGGAATATGGAGAGTGGGGCCGG
CATGGAGAAAAAGAGGCGGTGGTTGGACTGTGATGAGGAGGGAAGGTGGG
GAGGAGAGACGGGAGAGCTGCTTCCGCCTTTAGAGGAAGCGAGGCAGATC
TTGGGCGGCTTAAATGCGATTAAGGTCGGCGGCGTTACCTGCTGCTTCTA
TGAGACCTTGGGAGAGGAGGAGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_14:350758..352035+

>mRNA_6026 ID=mRNA_6026|Name=jgi.p|Nanoce1779_2|80304|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_14:350758..352035+ (Nannochloropsis oceanica)
ATGACCTCGCACCCCCCCGCTGCTGCTGCCTCGGAAGACAGCCCCTCGAC
GCCATGCCCAACACTGCCATACGCCGGCAAATATTCAGCAGGAGAAGCCA
ACGAAGCAGTATTGGACAAAATGACGCGTCGGAAGCTTAAGAAATTGCGG
AAGAAAATGCGGAGCGGGCAGCTCTCGTTACACGACACGGAGGAATGCAA
GAAGCTTGGAATTGTGGTGCGGGCCGAGGTGGATTGGAGCGAGGAAATTA
AGGATGGCCGACGGCCTTGCTTGGGCCCGGGGGACTTGCGCCGTGCGATT
GTGCACATCTTGACGGCTGGTGTCAATGCACATTGCCCGAGTTGGCTGCG
GTTGGTGAATGCGCGGCTGTTGACGTCTGTGGTGGTGGTGAGCTTGGCAG
GGGTGGAACCCGCGTACTTGCAAGATAATTTATCACAACTACCTTTTCTG
CAAGCATGCTCGAGGCCAGTGGATTTGCGGTTGTACCATGGACGGCACCC
GCGCCGATGTATTTATTCCCTCTTGTTTTACCCTCGTCCGAAGCAGGGAG
GGAAGGAGGGAGAAGGAAAATGCGGTGGCGGTGTGGGGGTAGGAAAGAGT
GGTATATTGGAAAGTGAGGAGTCGAAAAAGGGAAGAAAGCGCGGTCGATC
GAACGGCGACGAATATGATCACGAGGTGGAGGATGGGGAGGAGGAGGGGG
AAGGGGAGGAAGGGGAGGAAGAAGTGGAATGCTTGCCTGAAGATGATGAC
GTGACTGTGAGTGTGGATCCGGCAGAGCGATACGTATTGAGTCTTCCTCA
ATTAAAGCTGGCCGGATTTCCCTTGCCACCGGGGGGGGTGATTGTACGGG
AGCCCCCGAGTCGAAGCCCGACGGAGAAGGAGGGAGGGCATGGATACCAG
GATAATGATGAATATGAGGGGGAGGATGGGAAGGACGGGGGGGGAACATG
A
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Synonyms
Publications