jgi.p|Nanoce1779_2|79913, mRNA_6022 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|79913
Unique Name	mRNA_6022
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1229
Alignment location	scaffold_14:337633..340095 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	79999
Track	FilteredModels2
ProteinId	79913

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:337633..340095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|79913	gene_6022	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|79913	mRNA_6022-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6022	CDS_6022	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:337633..340095+
coding sequence from alignment at scaffold_14:337633..340095+

mRNA sequence

>mRNA_6022 ID=mRNA_6022|Name=jgi.p|Nanoce1779_2|79913|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
AAGTCGAAGATACCACCGGTTTCCACCAGCAATCGCAGCCACGGCAAAAT
CTGCTTGGGGTACCACGTACGACCTGCGCCTCCCAGAACTTTCTTGCTGG
AAATGTCGACGGTGGCCATGTCTAATCAAAACAGAAGCAAGATAGGAGGA
GGCTCTGGGCAAGACCTCCTCGATGGAGAATTCCTGGGCTTGAGTCATTC
CCCACCCCAGTTTACGCCCTCCAGTTACGAGACTTCGCACATGCACAAGC
GCATCCGATCTGGCTCCATCTCCGGCCGTCTACGCAGCGCCTCGGAGCTG
GAGGACAAGGGCATCATTGATCGAATGCAGAAAGGTGCACTCAAGAATTT
GATCATGTCCGGCGACGAACACTTACTCTCTGCCTTGGACAAATTTTCGG
TGGAAGGCGACTCGACCGAGCTGCACGCGTTGTTGAAATCTGGGGCATTG
GAGGGACAGCCTGGCTTAGACCTTGACTTGTTGATGGACGACTTGGACAT
GAACTTTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACGACCGCGT
CCAGCGGTGGCGGCAATGGGGCGGCCTCCCTCCTCATGCCCGTCCCGCGT
GCCAGTCCTTCTCCCTCTCTTTCCCAAGCCTCCGAACGGGACGTGAACAA
GCACTATATTGGGGCTTACTCGCCCGAGTCCCGTCGGATGCGCCTCGAGA
AATTCTGGGACAAGAAGAAGAATCGCATTTGGGATCGAAAGGTGAAGTAC
GATGTGAGGAAAAATTTTGCGGATTCCCGGGTGCGTGTGAAGGGCCGGTT
TGTGAAGAAGGAGGATGAGGCTATTTTGATCGAGGTAAATACGTTGACGA
GCAAGGAGGGGGCGATGGACGCGGCGCCGGTGTCTGCGGGGGGAGCAGGG
GGAGGAGGGGGAGGAGTGGGGGACATGTCGGCAAGCAGTTTGATGCCGGG
GATGGGGGGGGGGAGGGAGGGAGCAGTGTTTCGGCATACGATGTTGCCGA
GCAGTAGCAGTGGGGGTGGGGGAGGAAGTGGGATGGTAATGCGGAAGGAG
GAGGTAGATCTCGAGGAGGTCGAGGACGGGAACGAGGTGGCCGCGGGGAT
GGAGGACCTGGAAGACTTGCTGGCGCCACTGGAGGGGCTGTAAAGGACGG
AGGCAAGGGAGGAAGGGAGGAAGAGAGGGAGGGATATTCAGAGGTGTGCA
GTGAGTCATCAGCAGCGATTGTCTCGATC

protein sequence of jgi.p|Nanoce1779_2|79913

>mRNA_6022-protein ID=mRNA_6022-protein|Name=jgi.p|Nanoce1779_2|79913|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MSTVAMSNQNRSKIGGGSGQDLLDGEFLGLSHSPPQFTPSSYETSHMHKR
IRSGSISGRLRSASELEDKGIIDRMQKGALKNLIMSGDEHLLSALDKFSV
EGDSTELHALLKSGALEGQPGLDLDLLMDDLDMNFLSSSSSSSSSSTTAS
SGGGNGAASLLMPVPRASPSPSLSQASERDVNKHYIGAYSPESRRMRLEK
FWDKKKNRIWDRKVKYDVRKNFADSRVRVKGRFVKKEDEAILIEVNTLTS
KEGAMDAAPVSAGGAGGGGGGVGDMSASSLMPGMGGGREGAVFRHTMLPS
SSSGGGGGSGMVMRKEEVDLEEVEDGNEVAAGMEDLEDLLAPLEGL*

mRNA from alignment at scaffold_14:337633..340095+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6022 ID=mRNA_6022|Name=jgi.p|Nanoce1779_2|79913|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp|location=Sequence derived from alignment at scaffold_14:337633..340095+ (Nannochloropsis oceanica)
AAGTCGAAGATACCACCGGTTTCCACCAGCAATCGCAGCCACGGCAAAAT
CTGCTTGGGGTACCACGTACGACCTGCGCCTCCCAGAACTTTCTTGCTGG
AAATGTCGACGGTGGCCATGTCTAATCAAAACAGAAGCAAGATAGGAGGA
GGCTCTGGGCAAGACCTCCTCGATGGAGAATTCCTGGGCTTGAGTCATTC
CCCACCCCAGTTTACGCCCTCCAGTTACGAGACTTCGCACATGCACAAGG
TAAGCGAGGAAGGGAGGGGGGAAGGAAGGGAGGGGAGGAATTGGAGGGGA
TTCAGTGACGGCGGGGTGTGATGCGCCAGAGGTACCGCCGGTGTACGATG
CACAACATTCTGTCTTATTTGTCGTGTGCGTAAGCGGGAATGACAGAGGA
AGAAAGAGTGACAGTTTGAGTGCCAATTCTGGGTTGGAAAAACGTGCCTC
TTTTCATGGATTTCAGGGATCCCATGGGTCCTGTGCGGTGTGTGGAAATA
TCGTATCCGGTCTCATACGTTAAAAGCTCTCGAGCATCACGAAATTTTCA
TGCCTAGCATCTTCCAAGTCTATCAAGTGCCAGCACACACATCTTACCAA
AGAGATATTTCTGCCACCTCGCACATTTTCTAAACCCCTCTGTCTCTCCT
GCCCTCCCTCCCTCCCCCCCCCTCTCCATCTCCCCCTCCAGCGCATCCGA
TCTGGCTCCATCTCCGGCCGTCTACGCAGCGCCTCGGAGCTGGAGGACAA
GGGCATCATTGATCGAATGCAGAAAGGTGCACTCAAGAATTTGATCATGT
CCGGCGACGAACACTTACTCTCTGCCTTGGACAAATTTTCGGTGGAAGGC
GACTCGACCGAGCTGCACGCGTTGTTGAAATCTGGGGCATTGGAGGGACA
GCCTGGCTTAGACCTTGACTTGTTGATGGACGACTTGGACATGAACTTTC
TGCACCTTACCAGTGGCTTGGGAGGGGGAGGGGGAGGAGTGGCTGGTGGT
GCTGCGGGGACTGGAGGAGTAGGAGGAGCGGGAGGGGGAGGGAGGGAGGG
AGGGCATGGTGGGGGGGAGGCGGAAAATTATCAGTTTGATATGGATGACA
TGGCGTCGTTCATCGCGGGCGATCACGGGGTGGGTGCAGGGAGTTTGGTG
GATGATCTGAACCTGTTGGTGGGCGGAGGGGTTGGAGGAGGGATGGGGGG
AAGGAGCATGAGCCCAGGACACGGGGGGTCCTTGTCGGGCTTGGGCTTCT
CGCCGTTTGGATTGGATGGCGGGACAGGGGGGGGAGGTTCGGGCACATAT
TTTGTGACAGTCAAGGAGGATGTGCCCCTGCAGCAGGGAGGAAGGAAGGG
TGTGGGAGGAGGGCTGGGAGGGAAGGGGAAGGTAGTGAAGGGGCCTGGGC
TAGCGTTGTCGATCAAGACTAAGCCGCCATCAGGCTCGCCCTCCTCGTCC
TCGTCCCCTTCCTCTATCCCACCCTCCTCGTCTGCCTCAGGCCCGGCAGG
TATTCGGGGCCTCGCCATCCCTCGCCAATCCCAACCGTCACAAACGAAGG
GACAGAAGAAGACAACTGCCGCTGCTGCCGCTGCTGCTGCTTCGGTTGCC
AACGTGGCAGCCACGGTTGGTGCCGCGCTCGCCAACAAATCGCACGGTGC
AGGCGCTGTCAAGGGCATCAACAGCAACACCAACAGCAGCAATGGTGGTA
AGATGAGCCCAACCCTTTCAAACGCTGCAGGCATCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCACGACCGCGTCCAGCGGTGGCGGCAA
TGGGGCGGCCTCCCTCCTCATGCCCGTCCCGCGTGCCAGTCCTTCTCCCT
CTCTTTCCCAAGCCTCCGAACGGGACGTGAACAAGCACTATATTGGGGCT
TACTCGCCCGAGTCCCGTCGGATGCGCCTCGAGAAATTCTGGGACAAGAA
GAAGAATCGCATTTGGGATCGAAAGGTGAAGTACGATGTGAGGAAAAATT
TTGCGGATTCCCGGGTGCGTGTGAAGGGCCGGTTTGTGAAGAAGGAGGAT
GAGGCTATTTTGATCGAGGTAAATACGTTGACGAGCAAGGAGGGGGCGAT
GGACGCGGCGCCGGTGTCTGCGGGGGGAGCAGGGGGAGGAGGGGGAGGAG
TGGGGGACATGTCGGCAAGCAGTTTGATGCCGGGGATGGGGGGGGGGAGG
GAGGGAGCAGTGTTTCGGCATACGATGTTGCCGAGCAGTAGCAGTGGGGG
TGGGGGAGGAAGTGGGATGGTAATGCGGAAGGAGGAGGTAGATCTCGAGG
AGGTCGAGGACGGGAACGAGGTGGCCGCGGGGATGGAGGACCTGGAAGAC
TTGCTGGCGCCACTGGAGGGGCTGTAAAGGACGGAGGCAAGGGAGGAAGG
GAGGAAGAGAGGGAGGGATATTCAGAGGTGTGCAGTGAGTCATCAGCAGC
GATTGTCTCGATC

Coding sequence (CDS) from alignment at scaffold_14:337633..340095+

>mRNA_6022 ID=mRNA_6022|Name=jgi.p|Nanoce1779_2|79913|organism=Nannochloropsis oceanica|type=CDS|length=3123bp|location=Sequence derived from alignment at scaffold_14:337633..340095+ (Nannochloropsis oceanica)
ATGTCGACGGTGGCCATGTCTAATCAAAACAGAAGCAAGATAGGAGGAGG
CTCTGGGCAAGACCTCCTCGATGGAGAATTCCTGGGCTTGAGTCATTCCC
CACCCCAGTTTACGCCCTCCAGTTACGAGACTTCGCACATGCACAAGCGC
ATCCGATCTGGCTCCATCTCCGGCCGTCTACGCAGCGCCTCGGAGCTGGA
GGACAAGGGCATCATTGATCGAATGCAGAAAGGTGCACTCAAGAATTTGA
TCATGTCCGGCGACGAACACTTACTCTCTGCCTTGGACAAATTTTCGGTG
GAAGGCGACTCGACCGAGCTGCACGCGTTGTTGAAATCTGGGGCATTGGA
GGGACAGCCTGGCTTAGACCTTGACTTGTTGATGGACGACTTGGACATGA
ACTTTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACGACCGCGTCC
AGCGGTGGCGGCAATGGGGCGGCCTCCCTCCTCATGCCCGTCCCGCGTGC
CAGTCCTTCTCCCTCTCTTTCCCAAGCCTCCGAACGGGACGTGAACAAGC
ACTATATTGGGGCTTACTCGCCCGAGTCCCGTCGGATGCGCCTCGAGAAA
TTCTGGGACAAGAAGAAGAATCGCATTTGGGATCGAAAGGTGAAGTACGA
TGTGAGGAAAAATTTTGCGGATTCCCGGGTGCGTGTGAAGGGCCGGTTTG
TGAAGAAGGAGGATGAGGCTATTTTGATCGAGGTAAATACGTTGACGAGC
AAGGAGGGGGCGATGGACGCGGCGCCGGTGTCTGCGGGGGGAGCAGGGGG
AGGAGGGGGAGGAGTGGGGGACATGTCGGCAAGCAGTTTGATGCCGGGGA
TGGGGGGGGGGAGGGAGGGAGCAGTGTTTCGGCATACGATGTTGCCGAGC
AGTAGCAGTGGGGGTGGGGGAGGAAGTGGGATGGTAATGCGGAAGGAGGA
GGTAGATCTCGAGGAGGTCGAGGACGGGAACGAGGTGGCCGCGGGGATGG
AGGACCTGGAAGACTTGCTGGCGCCACTGGAGGGGCTGTAAATGTCGACG
GTGGCCATGTCTAATCAAAACAGAAGCAAGATAGGAGGAGGCTCTGGGCA
AGACCTCCTCGATGGAGAATTCCTGGGCTTGAGTCATTCCCCACCCCAGT
TTACGCCCTCCAGTTACGAGACTTCGCACATGCACAAGCGCATCCGATCT
GGCTCCATCTCCGGCCGTCTACGCAGCGCCTCGGAGCTGGAGGACAAGGG
CATCATTGATCGAATGCAGAAAGGTGCACTCAAGAATTTGATCATGTCCG
GCGACGAACACTTACTCTCTGCCTTGGACAAATTTTCGGTGGAAGGCGAC
TCGACCGAGCTGCACGCGTTGTTGAAATCTGGGGCATTGGAGGGACAGCC
TGGCTTAGACCTTGACTTGTTGATGGACGACTTGGACATGAACTTTCTCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACGACCGCGTCCAGCGGTGGC
GGCAATGGGGCGGCCTCCCTCCTCATGCCCGTCCCGCGTGCCAGTCCTTC
TCCCTCTCTTTCCCAAGCCTCCGAACGGGACGTGAACAAGCACTATATTG
GGGCTTACTCGCCCGAGTCCCGTCGGATGCGCCTCGAGAAATTCTGGGAC
AAGAAGAAGAATCGCATTTGGGATCGAAAGGTGAAGTACGATGTGAGGAA
AAATTTTGCGGATTCCCGGGTGCGTGTGAAGGGCCGGTTTGTGAAGAAGG
AGGATGAGGCTATTTTGATCGAGGTAAATACGTTGACGAGCAAGGAGGGG
GCGATGGACGCGGCGCCGGTGTCTGCGGGGGGAGCAGGGGGAGGAGGGGG
AGGAGTGGGGGACATGTCGGCAAGCAGTTTGATGCCGGGGATGGGGGGGG
GGAGGGAGGGAGCAGTGTTTCGGCATACGATGTTGCCGAGCAGTAGCAGT
GGGGGTGGGGGAGGAAGTGGGATGGTAATGCGGAAGGAGGAGGTAGATCT
CGAGGAGGTCGAGGACGGGAACGAGGTGGCCGCGGGGATGGAGGACCTGG
AAGACTTGCTGGCGCCACTGGAGGGGCTGTAAATGTCGACGGTGGCCATG
TCTAATCAAAACAGAAGCAAGATAGGAGGAGGCTCTGGGCAAGACCTCCT
CGATGGAGAATTCCTGGGCTTGAGTCATTCCCCACCCCAGTTTACGCCCT
CCAGTTACGAGACTTCGCACATGCACAAGCGCATCCGATCTGGCTCCATC
TCCGGCCGTCTACGCAGCGCCTCGGAGCTGGAGGACAAGGGCATCATTGA
TCGAATGCAGAAAGGTGCACTCAAGAATTTGATCATGTCCGGCGACGAAC
ACTTACTCTCTGCCTTGGACAAATTTTCGGTGGAAGGCGACTCGACCGAG
CTGCACGCGTTGTTGAAATCTGGGGCATTGGAGGGACAGCCTGGCTTAGA
CCTTGACTTGTTGATGGACGACTTGGACATGAACTTTCTCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCACGACCGCGTCCAGCGGTGGCGGCAATGGG
GCGGCCTCCCTCCTCATGCCCGTCCCGCGTGCCAGTCCTTCTCCCTCTCT
TTCCCAAGCCTCCGAACGGGACGTGAACAAGCACTATATTGGGGCTTACT
CGCCCGAGTCCCGTCGGATGCGCCTCGAGAAATTCTGGGACAAGAAGAAG
AATCGCATTTGGGATCGAAAGGTGAAGTACGATGTGAGGAAAAATTTTGC
GGATTCCCGGGTGCGTGTGAAGGGCCGGTTTGTGAAGAAGGAGGATGAGG
CTATTTTGATCGAGGTAAATACGTTGACGAGCAAGGAGGGGGCGATGGAC
GCGGCGCCGGTGTCTGCGGGGGGAGCAGGGGGAGGAGGGGGAGGAGTGGG
GGACATGTCGGCAAGCAGTTTGATGCCGGGGATGGGGGGGGGGAGGGAGG
GAGCAGTGTTTCGGCATACGATGTTGCCGAGCAGTAGCAGTGGGGGTGGG
GGAGGAAGTGGGATGGTAATGCGGAAGGAGGAGGTAGATCTCGAGGAGGT
CGAGGACGGGAACGAGGTGGCCGCGGGGATGGAGGACCTGGAAGACTTGC
TGGCGCCACTGGAGGGGCTGTAA

Synonyms

Publications