jgi.p|Nanoce1779_2|671693, mRNA_6020 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671693
Unique NamemRNA_6020
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length4635
Alignment locationscaffold_14:330149..336082 -

Link to JBrowse

Properties
Property NameValue
TranscriptId671779
TrackFilteredModels2
ProteinId671693
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:330149..336082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671693gene_6020Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671693mRNA_6020-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6020CDS_6020Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6020 ID=mRNA_6020|Name=jgi.p|Nanoce1779_2|671693|organism=Nannochloropsis oceanica|type=mRNA|length=4635bp
CCTGGCAAGCGCACCATGAAGGCCGACTCCATCGAGAGCTTGGAGTATTT
TCAGCAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
TTGTGCTACTGCTACTGATGCTTTTGTGGCTCGATCCCCTGGCACGCTTT
GCCTTCGTCCTTCTCCTGCTGTGGCCTCTTGGCGGTCAAGCGGGATACGA
TGGAGCACATTTAGGAACTAGCTTGCTCAAGGATGTGGCACATGCCCCCT
GCGTCCGCCTTTTCTCTTCGAAAGGCACGACGGGCTGCCGCACGCCTCAC
CATGACGGCACTACGGCTCCCCTCTACCATCTCGCTGGGTTTGGCGCGGC
CGACCAACAAGCGTTTCTACGACTCGAGGAAGGGGTCGCGGTGGTTATGT
CGGCCAATATGCTTAACGCCACGGTGCTTGATTTCTTGGCCACCTACGCT
TGGACTCAAGGAGTTATTGTCCTCGATGAAGAAAGCACCACTATTCCCTC
TCCCGACGTCCTAACGCCCCAAGGACAAGGCACACCGAGCGTTGCCTTCA
CCATAGGGCCGACGCATGTATGGAACCCGGCGGGAAGCGGGTTAACGATG
CAAAAATATGACTTTCCCGTGGTGCTCGCCACGGCGGCCGACGAAGGCAA
CGGCGCCGCGCAGGTCAAGGCATGGGCGCAGCACAACGGCGGCTTGGGCA
GGCACGGTCCTTACCCAAGATACACGGCCGTGTTCAATTTCTACTTTGGC
CCTACTTCATCTTCACTCTCAGACCCCCTGACGTCTGCGGATTGCCTGGG
GTGGAAAGACGTAGAAGGCAACCTAGTCCCTCAGTGCCTCCCAATGGGGG
GTCAATCAGTATGGGCCAGTCTCGATGGCCGCACAGGCCTACAAAGCAAG
CCCACCATTCTCCTCACAGCCGCCATGGATGGGATCTCTCTTTTCCATGA
CAAGACGCCCGCCGCCAACGAAGCCGTCGCCTCCATCCTCACCCTCCTCG
CCGCCACCAGTGCTCTCCGCAACGCCTCTGTTTCCGGCCAAATCGACCTA
ACCGCTGCCCCTTCTAATCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTG
GGGATTCGCAGGCTCCCGTCGCTTTGTCCGCGATATTTCTCCTGGAAAAA
TTACTTGTCCTGTTCCAATCGGAGGAAACCTATCACGTGACGGCACGGGC
TCGTGTGTGGGCCCTCATGGTGTCTATCCCTCCGTAGCCTTCCAAGATCT
AAGTTTGGAAAAAATAGCCCATATCCTAGCTATCGACCAGGTTGGGGTTT
TGTCATCTCCTTCTGTCTCTGCCGCTGTTCCCCTGACAGCGCTCTACAAC
GGTGCCCCGCCCACGGCGTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTC
TTTAGGCATCGACAACACCTCCAGCGTGACACCCGTAAATGGAGCAGGGG
CCATGCCACCTACCCCTCTGACGTCTTTTTTGCGGGAAACCCCTGGGTTG
AGTGGGGTGGTGTTGGCGGGGTATGGAGGAGCAGGAGCAGGAGCCGAATT
TATTGACCCGCGCTACCATTCTCACATGGATCAAGCGTCTTATTTGGACG
CTGACTCACTCACGACAGTGGCTAACTTAGTTGCAAGGACAGCGTGGAGC
TTGGCGTCTGGTGGGGAGGAAGGGATGGACGAAATCGTGGTTCAGAAAGA
GTTTATAGAAACGTTCCTCGCGTGTTTTACGGACGACTGGGACTGCCCGG
CTATGAAGCAATTTCGAGAAGCAGAGCATGACAACTTGAATAATTACTTG
GGCCAGTCTTATCTTTATACGCCACCGGTGCCTCAGCCGCCAAGTTATTA
CTCGGGCGTTACGGCATCGTACCAAGGGTTGCCGCTGATGCGGCATACGA
TGGAAGGAGGAAATAGCGGTCTTTTTTCGGCATGGCCTGCAGAGAAGGAT
TTTGTTCCAAACATGGAGGACAAGTTCTACGTGGTGCCCAAGCCATTGGA
AGCGTTTTTGAAGGGCTGGCTGGCTTATACCCTGGGAGGGGGAGGAGGAG
GAGCAACAGCAACCGCAACAGCAACAACAAGAGCAGCAGTAGGAGCAGCA
GCCAACATTCCTTGTAAATCTCCTCAGGATTGTGATGGCCTCTTATGCGA
CAACAATCTCTCCTCCCGCGAATGTTTCATTGATATTTGTGTCTGCAAAT
CTGCCTCCTTCTATCACACCGCCTTGGATCCCGGCCTGGCCCCTCAACCA
GAACCAGGCATATTTACAATCCTCGATGCTAAGACACCTAATTGGGCCGA
ACCCAACTGGGCGAGCATTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAA
GAGTGGAGGGGTTAGCGCTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGT
GCTCTGGGAGCGTGGATGGTGCAACGGGTGTTGGTGAAGCATCATTATTT
TGATTAGATAGGGAAATAGGTAAGCGGAACAATGCTTGTAAAGCAATAGT
ATCATAGAATTAATGACAGCTCAGGGAAGGGGATGCTTGTTGTGGCTCTT
TGACTGGGCACCTACTTCTGAGGTATTCCCCCCTCCCCCCCCATGCGTAT
GCTCCACTTAATTCTACCCTTCTCCTATCACCCGTGTAATGACTTGAAAC
CAACCCTTCTGTCTCTTTCGTATGCCTTCTGTCCTCTGCTGGCTGGTTGC
GTGGGTGCTTAATCCAGGCGTGCTCCCTATTAAAAAATATAAAAATGCCT
AAGTGGCGGCTGGTCGTTTCCCTTTCGCCCTCTTTTCATTGTTTCCAGCT
ATGTGTATGTATGTAAATCTTGCAAATCCCCCTGTCCCCATTCCCTTCCG
CTATCGCTCCTTCCGCAACCAAACCGAGGGCAGCATTCACACACAGGCAG
GCAACCTTCATCCCTTTCTTCCTCCCTCCCTCCCTAGAGCTTGATGCTCT
TCCAAATCTTCTCCGTCACCTTGGACTTCTTGAACTCCCCTGCAAAATTG
TTCACCACTGAGTCTACATCATCCTCATCCACAAGCATCAAATCCTTCAA
GGCCTCTTTCGTATCAGGGTTGCTCTTATACAAGTCACGGAAATAATGTA
ACGTGTTTGCTAGAAGGTCCTTACGGCAAGACAAAAGTTCGTCTTTGACC
ATCTGCTGCCACTGCTTCTGGAAGTCCTTACAGGCGGGCGTCCATTCCGA
TATGTCGTGGTTATCCAGCCAGGTAGCCGGGGGTTTGCATTTGTCCTACA
CGAAAAGGAGATGAAGGCGATGTAAGAAAGCGCTCCATGAGGATGAAGGA
GTGGATGATGAAGGCTAGACAGCCAACGAGTGTAAAAGAAAGGAATAGAG
GATGTGGCATAGACATCATAGGTGTATGCGGGTCGCCAATCCTCAGGCGC
AACGAGTGAGGAATGCCGACATGCGCGCACGGTCGACCATAAGCAGTCCG
CACTTACCGCATCGAAGACATCGTACCGCCGAACGAGGAACCCAGCTTGA
TTGGTGGTGAACTTGTATGCATAGGAGAAGGTCTGCATATCATCGTCCAC
CCCAACAAGCTCTGTTGAGAGCACGCCGTTGCTGTTCTTCATCAGCTGCA
GCTTCATCGGGTCGTCTCCCATGGTGGTGGTGGTGTGGGTGTAGCTGGCT
TTCGTCTGATCTGTAATGAATAAAGACGATGTAGAAGGTAAATGAGGGGA
ACTGCACAGATATCTACAATCGTCGCATGGTTGTCACCATGTTGAGGTTG
AACATGCTCTCCCAGATGCCGCACAGTATGGGACAGGAGACATGGGCAAG
TGATTGGAAAGAGCGTGAGAAGGACGCTTCAAGCGGTTCACAGCTGGCTC
TAGGCGTCGCCACTAGCAAAGTTGTATGGTTGAGGGATTGTTCTTGAAGT
GTACCAGCTCCACTTGGTTTACTTGGTTCCATTACATCTTGAGGGGTAGT
GTTCTGTTTTGCCGCAATGCAAAACCTCCCCATGCATGTTTAAGATAGCG
TCGCCCTTTATCACAGTCCCAAAAAGGGCGCCATAAAAGTACCGCAATAC
AGGAACGAATGGAATCCGAGCTGCGGTCCCGCACGTACTCTCAAAAAAAA
GCTGTAATCGCGCAACTATAGGAAGAAATGTAAAAGGGGTAAGCGTGTCA
ACGTGACGCCATTTGGCGACAAACCGACCACAGGAGTCAAAGCAAGCTTC
AAGTTGAACGAGCTTTGCAGCAAGGATCCGTACCTTACAGGACTAAATTA
GGACATCGAGACGAATAAACACTACGAATATGTGATTCGCCTTTTATGTC
TCTTTGCCTTTTTCGCCTTTAAAATGGTTTGCAATGTCAAGCTAGGGAGC
AGCAGCCGGGAGACGAAAGGCTGGTTCAAGCAGGAGCCGTTGAGCAAGTC
GAGAGTCAGGTCCTCAGCTTCCGCGTCGCCCTACCGCATCCTCCAAACGC
TTGAAAGCACACTGGCAGCACGGGTTTATAATTTCTCTTCTAATGATTTA
CCACGGAGACCCCCCTTTTCTCTGGGCTCTCAAAGTGGAAGACCTAAAAA
GTTTATCTATTTAGGGGAGAAATGAGGGACCGAAAAATGACAGAAAAGGG
GCCAAAGTGAAAAACTAGCAATTATGTCAATCAAG
back to top

protein sequence of jgi.p|Nanoce1779_2|671693

>mRNA_6020-protein ID=mRNA_6020-protein|Name=jgi.p|Nanoce1779_2|671693|organism=Nannochloropsis oceanica|type=polypeptide|length=814bp
MKADSIESLEYFQQEQEEEEEEEEEEEEVVLLLLMLLWLDPLARFAFVLL
LLWPLGGQAGYDGAHLGTSLLKDVAHAPCVRLFSSKGTTGCRTPHHDGTT
APLYHLAGFGAADQQAFLRLEEGVAVVMSANMLNATVLDFLATYAWTQGV
IVLDEESTTIPSPDVLTPQGQGTPSVAFTIGPTHVWNPAGSGLTMQKYDF
PVVLATAADEGNGAAQVKAWAQHNGGLGRHGPYPRYTAVFNFYFGPTSSS
LSDPLTSADCLGWKDVEGNLVPQCLPMGGQSVWASLDGRTGLQSKPTILL
TAAMDGISLFHDKTPAANEAVASILTLLAATSALRNASVSGQIDLTAAPS
NLAVAFFQADEWGFAGSRRFVRDISPGKITCPVPIGGNLSRDGTGSCVGP
HGVYPSVAFQDLSLEKIAHILAIDQVGVLSSPSVSAAVPLTALYNGAPPT
ALLEALAIASASLGIDNTSSVTPVNGAGAMPPTPLTSFLRETPGLSGVVL
AGYGGAGAGAEFIDPRYHSHMDQASYLDADSLTTVANLVARTAWSLASGG
EEGMDEIVVQKEFIETFLACFTDDWDCPAMKQFREAEHDNLNNYLGQSYL
YTPPVPQPPSYYSGVTASYQGLPLMRHTMEGGNSGLFSAWPAEKDFVPNM
EDKFYVVPKPLEAFLKGWLAYTLGGGGGGATATATATTRAAVGAAANIPC
KSPQDCDGLLCDNNLSSRECFIDICVCKSASFYHTALDPGLAPQPEPGIF
TILDAKTPNWAEPNWASIGFAVFPDASARVEGLALGVGAGVGALSALGAW
MVQRVLVKHHYFD*
back to top

mRNA from alignment at scaffold_14:330149..336082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6020 ID=mRNA_6020|Name=jgi.p|Nanoce1779_2|671693|organism=Nannochloropsis oceanica|type=mRNA|length=5934bp|location=Sequence derived from alignment at scaffold_14:330149..336082- (Nannochloropsis oceanica)
CCTGGCAAGCGCACCATGAAGGCCGACTCCATCGAGAGCTTGGAGTATTT TCAGGTAATTCCCTACCTCCCTCTTTCCCTCCCTCCCTCCGCCCCTCCCT CCCCTCCCTGTAAATTAGATTGACAGGAATGTGCCTAGGTAAAGGATGGA GGGGGGGAGGAAGGGAGGGAGGGAGAGAGGGAACGAAGTGAATTGCTATG AACAGTGGAGTCGAAAGCAGCTTGGAGTGCGATCAGATAATGGAGGGAGG GAGGTAAGTGAAAGGGTACTTGCCCATTGTTTTTCTTGTTTTCTTTTCTT CATTTTGACGTTGCATGCGGTGGCTGACGAATTGGACTGGACCGAGGCGC GGCGAAGAAATCAAAGATGTTACGTGCTCATGAGAGGGGGGGTGGGAATC GAATATGGGAGGGAGGGATGGAGGGAGGGAGGGATGGATGGTACGGACAG TGAGTAGACGAGCGATGGAAATAGGGAGAATCGGCTGTGGCAAGGATGAC GGGGAAGGGAAGGAGGAAGACGAGGGGAGGGGAGGGGAGGGAGTGAAGGG TGAAGGGGAGAGAGGGCCTGCCTTCTGTTGAAGATAGTCGATCACGTCCG ATGAAGAAGAGACCAGGGCAAGCAGATACTTTTTTGCCTTGTTGTCATGA TACATCTGATATGATATGGTATACCATACTAGATAGTATGGTATACATAT CTTAAAAACAAGGGCATGTAGACACCAATTTGCCGTATAATCATAATTTC TGATCCAATATGTATGACTCCTCTTCATCATCTTCCTCTACTACAACTTC TTCGCCATCCTTCTCCTCCTCTTCCTCCTCCCTCTCTTCCTCTTCCTCCT CCTTCGTCTAGTCCTCCTCCTCTTCATCCCTCCCCTGTTACTCCTTTCGC CTCCGTAGCAATTGCTTGGAGGATCCTTTGCCACAGCCGCTCTCCTCTAG ACGTCACTGACCTCGCTGACAATCTCTGCTGAGGATCTTGCATATGAGCG TGGCTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGGAACG GATAGGGCTTGCGCGGCCCGCAATACGTGACACTTGTGGTCGTACCGATA GTCAAGGCCACGGCACTGCTGCTGCCGCTGCTGCTGCTGCTGTTACTGCC GAGCAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGT TGTGCTACTGCTACTGATGCTTTTGTGGCTCGATCCCCTGGCACGCTTTG GTGCTGGCTTGGTGAGTTTCAATTTATTGCTCATGCATGCAAAAGCTCAT GACGCCCATCCCCGTACACAATAGGGGGAGAAACGACAGGAGGTCCACGT AAGCAAAGGAACTGCCAAAAGCGTTCCACCCTTACCTTGCCGCCCGCCTT GCTCTTCACCGGCGCTCGCCAAGTCTGCTTCATGCCTCTTTCCGGTGCAG CCTTCGTCCTTCTCCTGCTGTGGCCTCTTGGCGGTCAAGCGGGATACGAT GGAGCACATTTAGGAACTAGCTTGCTCAAGGATGTGGCACATGCCCCCTG CGTCCGCCTTTTCTCTTCGAAAGGCACGACGGGCTGCCGCACGCCTCACC ATGACGGCACTACGGCTCCCCTCTACCATCTCGCTGGGTTTGGCGCGGCC GACCAACAAGCGTTTCTACGACTCGAGGAAGGGGTCGCGGTGGTTATGTC GGCCAATATGCTTAACGCCACGGTGCTTGATTTCTTGGCCACCTACGCTT GGACTCAAGGAGTTATTGTCCTCGATGAAGAAAGCACCACTATTCCCTCT CCCGACGTCCTAACGCCCCAAGGACAAGGCACACCGAGCGTTGCCTTCAC CATAGGGCCGACGCATGTATGGAACCCGGCGGGAAGCGGGTTAACGATGC AAAAATATGACTTTCCCGTGGTGCTCGCCACGGCGGCCGACGAAGGCAAC GGCGCCGCGCAGGTCAAGGCATGGGCGCAGCACAACGGCGGCTTGGGCAG GCACGGTCCTTACCCAAGATACACGGCCGTGTTCAATTTCTACTTTGGCC CTACTTCATCTTCACTCTCAGACCCCCTGACGTCTGCGGATTGCCTGGGG TGGAAAGACGTAGAAGGCAACCTAGTCCCTCAGTGCCTCCCAATGGGGGG TCAATCAGTATGGGCCAGTCTCGATGGCCGCACAGGCCTACAAAGCAAGC CCACCATTCTCCTCACAGCCGCCATGGATGGGATCTCTCTTTTCCATGAC AAGACGCCCGCCGCCAACGAAGCCGTCGCCTCCATCCTCACCCTCCTCGC CGCCACCAGTGCTCTCCGCAACGCCTCTGTTTCCGGCCAAATCGACCTAA CCGCTGCCCCTTCTAATCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTGG GGATTCGCAGGCTCCCGTCGCTTTGTCCGCGATATTTCTCCTGGAAAAAT TACTTGTCCTGTTCCAATCGGAGGAAACCTATCACGTGACGGCACGGGCT CGTGTGTGGGCCCTCATGGTGTCTATCCCTCCGTAGCCTTCCAAGATCTA AGTTTGGAAAAAATAGCCCATATCCTAGCTATCGACCAGGTTGGGGTTTT GTCATCTCCTTCTGTCTCTGCCGCTGTTCCCCTGACAGCGCTCTACAACG GTGCCCCGCCCACGGCGTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTCT TTAGGCATCGACAACACCTCCAGCGTGACACCCGTAAATGGAGCAGGGGC CATGCCACCTACCCCTCTGACGTCTTTTTTGCGGGAAACCCCTGGGTTGA GTGGGGTGGTGTTGGCGGGGTATGGAGGAGCAGGAGCAGGAGCCGAATTT ATTGACCCGCGCTACCATTCTCACATGGATCAAGCGTCTTATTTGGACGC TGACTCACTCACGACAGTGGCTAACTTAGTTGCAAGGACAGCGTGGAGCT TGGCGTCTGGTGGGGAGGAAGGGATGGACGAAATCGTGGTTCAGAAAGAG TTTATAGAAACGTTCCTCGCGTGTTTTACGGACGACTGGGACTGCCCGGC TATGAAGCAATTTCGAGAAGCAGAGCATGACAACTTGAATAATTACTTGG GCCAGTCTTATCTTTATACGCCACCGGTGCCTCAGCCGCCAAGTTATTAC TCGGGCGTTACGGCATCGTACCAAGGGTTGCCGCTGATGCGGCATACGAT GGAAGGAGGAAATAGCGGTCTTTTTTCGGCATGGCCTGCAGAGAAGGATT TTGTTCCAAACATGGAGGACAAGTTCTACGTGGTGCCCAAGCCATTGGAA GCGTTTTTGAAGGGCTGGCTGGCTTATACCCTGGGAGGGGGAGGAGGAGG AGCAACAGCAACCGCAACAGCAACAACAAGAGCAGCAGTAGGAGCAGCAG CCAACATTCCTTGTAAATCTCCTCAGGATTGTGATGGCCTCTTATGCGAC AACAATCTCTCCTCCCGCGAATGTTTCATTGATATTTGTGTCTGCAAATC TGCCTCCTTCTATCACACCGCCTTGGATCCCGGCCTGGCCCCTCAACCAG AACCAGGCATATTTACAATCCTCGATGCTAAGACACCTAATTGGGCCGAA CCCAACTGGGCGAGCATTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAAG AGTGGAGGGGTTAGCGCTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGTG CTCTGGGAGCGTGGATGGTGCAACGGGTGTTGGTGAAGCATCATTATTTT GATTAGATAGGGAAATAGGTAAGCGGAACAATGCTTGTAAAGCAATAGTA TCATAGAATTAATGACAGCTCAGGGAAGGGGATGCTTGTTGTGGCTCTTT GACTGGGCACCTACTTCTGAGGTATTCCCCCCTCCCCCCCCATGCGTATG CTCCACTTAATTCTACCCTTCTCCTATCACCCGTGTAATGACTTGAAACC AACCCTTCTGTCTCTTTCGTATGCCTTCTGTCCTCTGCTGGCTGGTTGCG TGGGTGCTTAATCCAGGCGTGCTCCCTATTAAAAAATATAAAAATGCCTA AGTGGCGGCTGGTCGTTTCCCTTTCGCCCTCTTTTCATTGTTTCCAGCTA TGTGTATGTATGTAAATCTTGCAAATCCCCCTGTCCCCATTCCCTTCCGC TATCGCTCCTTCCGCAACCAAACCGAGGGCAGCATTCACACACAGGCAGG CAACCTTCATCCCTTTCTTCCTCCCTCCCTCCCTAGAGCTTGATGCTCTT CCAAATCTTCTCCGTCACCTTGGACTTCTTGAACTCCCCTGCAAAATTGT TCACCACTGAGTCTACATCATCCTCATCCACAAGCATCAAATCCTTCAAG GCCTCTTTCGTATCAGGGTTGCTCTTATACAAGTCACGGAAATAATGTAA CGTGTTTGCTAGAAGGTCCTTACGGCAAGACAAAAGTTCGTCTTTGACCA TCTGCTGCCACTGCTTCTGGAAGTCCTTACAGGCGGGCGTCCATTCCGAT ATGTCGTGGTTATCCAGCCAGGTAGCCGGGGGTTTGCATTTGTCCTACAC GAAAAGGAGATGAAGGCGATGTAAGAAAGCGCTCCATGAGGATGAAGGAG TGGATGATGAAGGCTAGACAGCCAACGAGTGTAAAAGAAAGGAATAGAGG ATGTGGCATAGACATCATAGGTGTATGCGGGTCGCCAATCCTCAGGCGCA ACGAGTGAGGAATGCCGACATGCGCGCACGGTCGACCATAAGCAGTCCGC ACTTACCGCATCGAAGACATCGTACCGCCGAACGAGGAACCCAGCTTGAT TGGTGGTGAACTTGTATGCATAGGAGAAGGTCTGCATATCATCGTCCACC CCAACAAGCTCTGTTGAGAGCACGCCGTTGCTGTTCTTCATCAGCTGCAG CTTCATCGGGTCGTCTCCCATGGTGGTGGTGGTGTGGGTGTAGCTGGCTT TCGTCTGATCTGTAATGAATAAAGACGATGTAGAAGGTAAATGAGGGGAA CTGCACAGATATCTACAATCGTCGCATGGTTGTCACCATGTTGAGGTTGA ACATGCTCTCCCAGATGCCGCACAGTATGGGACAGGAGACATGGGCAAGT GATTGGAAAGAGCGTGAGAAGGACGCTTCAAGCGGTTCACAGCTGGCTCT AGGCGTCGCCACTAGCAAAGTTGTATGGTTGAGGGATTGTTCTTGAAGTG TACCAGCTCCACTTGGTTTACTTGGTTCCATTACATCTTGAGGGGTAGTG TTCTGTTTTGCCGCAATGCAAAACCTCCCCATGCATGTTTAAGATAGCGT CGCCCTTTATCACAGTCCCAAAAAGGGCGCCATAAAAGTACCGCAATACA GGAACGAATGGAATCCGAGCTGCGGTCCCGCACGTACTCTCAAAAAAAAG CTGTAATCGCGCAACTATAGGAAGAAATGTAAAAGGGGTAAGCGTGTCAA CGTGACGCCATTTGGCGACAAACCGACCACAGGAGTCAAAGCAAGCTTCA AGTTGAACGAGCTTTGCAGCAAGGATCCGTACCTTACAGGACTAAATTAG GACATCGAGACGAATAAACACTACGAATATGTGATTCGCCTTTTATGTCT CTTTGCCTTTTTCGCCTTTAAAATGGTTTGCAATGTCAAGCTAGGGAGCA GCAGCCGGGAGACGAAAGGCTGGTTCAAGCAGGAGCCGTTGAGCAAGTCG AGAGTCAGGTCCTCAGCTTCCGCGTCGCCCTACCGCATCCTCCAAACGCT TGAAAGCACACTGGCAGCACGGGTTTATAATTTCTCTTCTAATGATTTAC CACGGAGACCCCCCTTTTCTCTGGGCTCTCAAAGTGGAAGACCTAAAAAG TTTATCTATTTAGGGGAGAAATGAGGGACCGAAAAATGACAGAAAAGGGG CCAAAGTGAAAAACTAGCAATTATGTCAATCAAG
back to top

Coding sequence (CDS) from alignment at scaffold_14:330149..336082-

>mRNA_6020 ID=mRNA_6020|Name=jgi.p|Nanoce1779_2|671693|organism=Nannochloropsis oceanica|type=CDS|length=7326bp|location=Sequence derived from alignment at scaffold_14:330149..336082- (Nannochloropsis oceanica)
CCTTCGTCCTTCTCCTGCTGTGGCCTCTTGGCGGTCAAGCGGGATACGAT
GGAGCACATTTAGGAACTAGCTTGCTCAAGGATGTGGCACATGCCCCCTG
CGTCCGCCTTTTCTCTTCGAAAGGCACGACGGGCTGCCGCACGCCTCACC
ATGACGGCACTACGGCTCCCCTCTACCATCTCGCTGGGTTTGGCGCGGCC
GACCAACAAGCGTTTCTACGACTCGAGGAAGGGGTCGCGGTGGTTATGTC
GGCCAATATGCTTAACGCCACGGTGCTTGATTTCTTGGCCACCTACGCTT
GGACTCAAGGAGTTATTGTCCTCGATGAAGAAAGCACCACTATTCCCTCT
CCCGACGTCCTAACGCCCCAAGGACAAGGCACACCGAGCGTTGCCTTCAC
CATAGGGCCGACGCATGTATGGAACCCGGCGGGAAGCGGGTTAACGATGC
AAAAATATGACTTTCCCGTGGTGCTCGCCACGGCGGCCGACGAAGGCAAC
GGCGCCGCGCAGGTCAAGGCATGGGCGCAGCACAACGGCGGCTTGGGCAG
GCACGGTCCTTACCCAAGATACACGGCCGTGTTCAATTTCTACTTTGGCC
CTACTTCATCTTCACTCTCAGACCCCCTGACGTCTGCGGATTGCCTGGGG
TGGAAAGACGTAGAAGGCAACCTAGTCCCTCAGTGCCTCCCAATGGGGGG
TCAATCAGTATGGGCCAGTCTCGATGGCCGCACAGGCCTACAAAGCAAGC
CCACCATTCTCCTCACAGCCGCCATGGATGGGATCTCTCTTTTCCATGAC
AAGACGCCCGCCGCCAACGAAGCCGTCGCCTCCATCCTCACCCTCCTCGC
CGCCACCAGTGCTCTCCGCAACGCCTCTGTTTCCGGCCAAATCGACCTAA
CCGCTGCCCCTTCTAATCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTGG
GGATTCGCAGGCTCCCGTCGCTTTGTCCGCGATATTTCTCCTGGAAAAAT
TACTTGTCCTGTTCCAATCGGAGGAAACCTATCACGTGACGGCACGGGCT
CGTGTGTGGGCCCTCATGGTGTCTATCCCTCCGTAGCCTTCCAAGATCTA
AGTTTGGAAAAAATAGCCCATATCCTAGCTATCGACCAGGTTGGGGTTTT
GTCATCTCCTTCTGTCTCTGCCGCTGTTCCCCTGACAGCGCTCTACAACG
GTGCCCCGCCCACGGCGTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTCT
TTAGGCATCGACAACACCTCCAGCGTGACACCCGTAAATGGAGCAGGGGC
CATGCCACCTACCCCTCTGACGTCTTTTTTGCGGGAAACCCCTGGGTTGA
GTGGGGTGGTGTTGGCGGGGTATGGAGGAGCAGGAGCAGGAGCCGAATTT
ATTGACCCGCGCTACCATTCTCACATGGATCAAGCGTCTTATTTGGACGC
TGACTCACTCACGACAGTGGCTAACTTAGTTGCAAGGACAGCGTGGAGCT
TGGCGTCTGGTGGGGAGGAAGGGATGGACGAAATCGTGGTTCAGAAAGAG
TTTATAGAAACGTTCCTCGCGTGTTTTACGGACGACTGGGACTGCCCGGC
TATGAAGCAATTTCGAGAAGCAGAGCATGACAACTTGAATAATTACTTGG
GCCAGTCTTATCTTTATACGCCACCGGTGCCTCAGCCGCCAAGTTATTAC
TCGGGCGTTACGGCATCGTACCAAGGGTTGCCGCTGATGCGGCATACGAT
GGAAGGAGGAAATAGCGGTCTTTTTTCGGCATGGCCTGCAGAGAAGGATT
TTGTTCCAAACATGGAGGACAAGTTCTACGTGGTGCCCAAGCCATTGGAA
GCGTTTTTGAAGGGCTGGCTGGCTTATACCCTGGGAGGGGGAGGAGGAGG
AGCAACAGCAACCGCAACAGCAACAACAAGAGCAGCAGTAGGAGCAGCAG
CCAACATTCCTTGTAAATCTCCTCAGGATTGTGATGGCCTCTTATGCGAC
AACAATCTCTCCTCCCGCGAATGTTTCATTGATATTTGTGTCTGCAAATC
TGCCTCCTTCTATCACACCGCCTTGGATCCCGGCCTGGCCCCTCAACCAG
AACCAGGCATATTTACAATCCTCGATGCTAAGACACCTAATTGGGCCGAA
CCCAACTGGGCGAGCATTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAAG
AGTGGAGGGGTTAGCGCTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGTG
CTCTGGGAGCGTGGATGGTGCAACGGGTGTTGGTGAAGCATCATTATTTT
GATTAGCAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGTTGTGCTACTGCTACTGATGCTTTTGTGGCTCGATCCCCTGGCACGCT
TTGATGAAGGCCGACTCCATCGAGAGCTTGGAGTATTTTCAGCCTTCGTC
CTTCTCCTGCTGTGGCCTCTTGGCGGTCAAGCGGGATACGATGGAGCACA
TTTAGGAACTAGCTTGCTCAAGGATGTGGCACATGCCCCCTGCGTCCGCC
TTTTCTCTTCGAAAGGCACGACGGGCTGCCGCACGCCTCACCATGACGGC
ACTACGGCTCCCCTCTACCATCTCGCTGGGTTTGGCGCGGCCGACCAACA
AGCGTTTCTACGACTCGAGGAAGGGGTCGCGGTGGTTATGTCGGCCAATA
TGCTTAACGCCACGGTGCTTGATTTCTTGGCCACCTACGCTTGGACTCAA
GGAGTTATTGTCCTCGATGAAGAAAGCACCACTATTCCCTCTCCCGACGT
CCTAACGCCCCAAGGACAAGGCACACCGAGCGTTGCCTTCACCATAGGGC
CGACGCATGTATGGAACCCGGCGGGAAGCGGGTTAACGATGCAAAAATAT
GACTTTCCCGTGGTGCTCGCCACGGCGGCCGACGAAGGCAACGGCGCCGC
GCAGGTCAAGGCATGGGCGCAGCACAACGGCGGCTTGGGCAGGCACGGTC
CTTACCCAAGATACACGGCCGTGTTCAATTTCTACTTTGGCCCTACTTCA
TCTTCACTCTCAGACCCCCTGACGTCTGCGGATTGCCTGGGGTGGAAAGA
CGTAGAAGGCAACCTAGTCCCTCAGTGCCTCCCAATGGGGGGTCAATCAG
TATGGGCCAGTCTCGATGGCCGCACAGGCCTACAAAGCAAGCCCACCATT
CTCCTCACAGCCGCCATGGATGGGATCTCTCTTTTCCATGACAAGACGCC
CGCCGCCAACGAAGCCGTCGCCTCCATCCTCACCCTCCTCGCCGCCACCA
GTGCTCTCCGCAACGCCTCTGTTTCCGGCCAAATCGACCTAACCGCTGCC
CCTTCTAATCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTGGGGATTCGC
AGGCTCCCGTCGCTTTGTCCGCGATATTTCTCCTGGAAAAATTACTTGTC
CTGTTCCAATCGGAGGAAACCTATCACGTGACGGCACGGGCTCGTGTGTG
GGCCCTCATGGTGTCTATCCCTCCGTAGCCTTCCAAGATCTAAGTTTGGA
AAAAATAGCCCATATCCTAGCTATCGACCAGGTTGGGGTTTTGTCATCTC
CTTCTGTCTCTGCCGCTGTTCCCCTGACAGCGCTCTACAACGGTGCCCCG
CCCACGGCGTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTCTTTAGGCAT
CGACAACACCTCCAGCGTGACACCCGTAAATGGAGCAGGGGCCATGCCAC
CTACCCCTCTGACGTCTTTTTTGCGGGAAACCCCTGGGTTGAGTGGGGTG
GTGTTGGCGGGGTATGGAGGAGCAGGAGCAGGAGCCGAATTTATTGACCC
GCGCTACCATTCTCACATGGATCAAGCGTCTTATTTGGACGCTGACTCAC
TCACGACAGTGGCTAACTTAGTTGCAAGGACAGCGTGGAGCTTGGCGTCT
GGTGGGGAGGAAGGGATGGACGAAATCGTGGTTCAGAAAGAGTTTATAGA
AACGTTCCTCGCGTGTTTTACGGACGACTGGGACTGCCCGGCTATGAAGC
AATTTCGAGAAGCAGAGCATGACAACTTGAATAATTACTTGGGCCAGTCT
TATCTTTATACGCCACCGGTGCCTCAGCCGCCAAGTTATTACTCGGGCGT
TACGGCATCGTACCAAGGGTTGCCGCTGATGCGGCATACGATGGAAGGAG
GAAATAGCGGTCTTTTTTCGGCATGGCCTGCAGAGAAGGATTTTGTTCCA
AACATGGAGGACAAGTTCTACGTGGTGCCCAAGCCATTGGAAGCGTTTTT
GAAGGGCTGGCTGGCTTATACCCTGGGAGGGGGAGGAGGAGGAGCAACAG
CAACCGCAACAGCAACAACAAGAGCAGCAGTAGGAGCAGCAGCCAACATT
CCTTGTAAATCTCCTCAGGATTGTGATGGCCTCTTATGCGACAACAATCT
CTCCTCCCGCGAATGTTTCATTGATATTTGTGTCTGCAAATCTGCCTCCT
TCTATCACACCGCCTTGGATCCCGGCCTGGCCCCTCAACCAGAACCAGGC
ATATTTACAATCCTCGATGCTAAGACACCTAATTGGGCCGAACCCAACTG
GGCGAGCATTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAAGAGTGGAGG
GGTTAGCGCTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGTGCTCTGGGA
GCGTGGATGGTGCAACGGGTGTTGGTGAAGCATCATTATTTTGATTAGCA
GGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGTGC
TACTGCTACTGATGCTTTTGTGGCTCGATCCCCTGGCACGCTTTGATGAA
GGCCGACTCCATCGAGAGCTTGGAGTATTTTCAGCCTTCGTCCTTCTCCT
GCTGTGGCCTCTTGGCGGTCAAGCGGGATACGATGGAGCACATTTAGGAA
CTAGCTTGCTCAAGGATGTGGCACATGCCCCCTGCGTCCGCCTTTTCTCT
TCGAAAGGCACGACGGGCTGCCGCACGCCTCACCATGACGGCACTACGGC
TCCCCTCTACCATCTCGCTGGGTTTGGCGCGGCCGACCAACAAGCGTTTC
TACGACTCGAGGAAGGGGTCGCGGTGGTTATGTCGGCCAATATGCTTAAC
GCCACGGTGCTTGATTTCTTGGCCACCTACGCTTGGACTCAAGGAGTTAT
TGTCCTCGATGAAGAAAGCACCACTATTCCCTCTCCCGACGTCCTAACGC
CCCAAGGACAAGGCACACCGAGCGTTGCCTTCACCATAGGGCCGACGCAT
GTATGGAACCCGGCGGGAAGCGGGTTAACGATGCAAAAATATGACTTTCC
CGTGGTGCTCGCCACGGCGGCCGACGAAGGCAACGGCGCCGCGCAGGTCA
AGGCATGGGCGCAGCACAACGGCGGCTTGGGCAGGCACGGTCCTTACCCA
AGATACACGGCCGTGTTCAATTTCTACTTTGGCCCTACTTCATCTTCACT
CTCAGACCCCCTGACGTCTGCGGATTGCCTGGGGTGGAAAGACGTAGAAG
GCAACCTAGTCCCTCAGTGCCTCCCAATGGGGGGTCAATCAGTATGGGCC
AGTCTCGATGGCCGCACAGGCCTACAAAGCAAGCCCACCATTCTCCTCAC
AGCCGCCATGGATGGGATCTCTCTTTTCCATGACAAGACGCCCGCCGCCA
ACGAAGCCGTCGCCTCCATCCTCACCCTCCTCGCCGCCACCAGTGCTCTC
CGCAACGCCTCTGTTTCCGGCCAAATCGACCTAACCGCTGCCCCTTCTAA
TCTCGCGGTGGCGTTTTTCCAGGCCGACGAGTGGGGATTCGCAGGCTCCC
GTCGCTTTGTCCGCGATATTTCTCCTGGAAAAATTACTTGTCCTGTTCCA
ATCGGAGGAAACCTATCACGTGACGGCACGGGCTCGTGTGTGGGCCCTCA
TGGTGTCTATCCCTCCGTAGCCTTCCAAGATCTAAGTTTGGAAAAAATAG
CCCATATCCTAGCTATCGACCAGGTTGGGGTTTTGTCATCTCCTTCTGTC
TCTGCCGCTGTTCCCCTGACAGCGCTCTACAACGGTGCCCCGCCCACGGC
GTTGCTTGAAGCCTTGGCTATTGCTAGTGCCTCTTTAGGCATCGACAACA
CCTCCAGCGTGACACCCGTAAATGGAGCAGGGGCCATGCCACCTACCCCT
CTGACGTCTTTTTTGCGGGAAACCCCTGGGTTGAGTGGGGTGGTGTTGGC
GGGGTATGGAGGAGCAGGAGCAGGAGCCGAATTTATTGACCCGCGCTACC
ATTCTCACATGGATCAAGCGTCTTATTTGGACGCTGACTCACTCACGACA
GTGGCTAACTTAGTTGCAAGGACAGCGTGGAGCTTGGCGTCTGGTGGGGA
GGAAGGGATGGACGAAATCGTGGTTCAGAAAGAGTTTATAGAAACGTTCC
TCGCGTGTTTTACGGACGACTGGGACTGCCCGGCTATGAAGCAATTTCGA
GAAGCAGAGCATGACAACTTGAATAATTACTTGGGCCAGTCTTATCTTTA
TACGCCACCGGTGCCTCAGCCGCCAAGTTATTACTCGGGCGTTACGGCAT
CGTACCAAGGGTTGCCGCTGATGCGGCATACGATGGAAGGAGGAAATAGC
GGTCTTTTTTCGGCATGGCCTGCAGAGAAGGATTTTGTTCCAAACATGGA
GGACAAGTTCTACGTGGTGCCCAAGCCATTGGAAGCGTTTTTGAAGGGCT
GGCTGGCTTATACCCTGGGAGGGGGAGGAGGAGGAGCAACAGCAACCGCA
ACAGCAACAACAAGAGCAGCAGTAGGAGCAGCAGCCAACATTCCTTGTAA
ATCTCCTCAGGATTGTGATGGCCTCTTATGCGACAACAATCTCTCCTCCC
GCGAATGTTTCATTGATATTTGTGTCTGCAAATCTGCCTCCTTCTATCAC
ACCGCCTTGGATCCCGGCCTGGCCCCTCAACCAGAACCAGGCATATTTAC
AATCCTCGATGCTAAGACACCTAATTGGGCCGAACCCAACTGGGCGAGCA
TTGGTTTCGCTGTCTTTCCTGACGCCAGTGCAAGAGTGGAGGGGTTAGCG
CTTGGTGTGGGGGCGGGGGTGGGAGCGCTGAGTGCTCTGGGAGCGTGGAT
GGTGCAACGGGTGTTGGTGAAGCATCATTATTTTGATTAGCAGGAGCAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGTGCTACTGCTA
CTGATGCTTTTGTGGCTCGATCCCCTGGCACGCTTTGATGAAGGCCGACT
CCATCGAGAGCTTGGAGTATTTTCAG
back to top
Synonyms
Publications