jgi.p|Nanoce1779_2|593493, mRNA_6018 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593493
Unique Name	mRNA_6018
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1793
Alignment location	scaffold_14:328363..330155 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593579
Track	FilteredModels2
ProteinId	593493

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:328363..330155 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593493	gene_6018	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593493	mRNA_6018-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6018	CDS_6018	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:328363..330155+
coding sequence from alignment at scaffold_14:328363..330155+

mRNA sequence

>mRNA_6018 ID=mRNA_6018|Name=jgi.p|Nanoce1779_2|593493|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp
GGGAGAGGAAGGGACGGGGGGAGCAGAGGGTAGGTTGCATAAATCGAAGA
GTGGGGGGAGCTTGCGGTTGCTGAGCTTGGCGACGATTAGGCATCAATTA
GAAGGGATGAGCGTGGCTGCAGGGCAATCGCTCCGATTGAATAGCTCGGC
TACTACCTCACAGAAGCAATTAAAGCCCCGGCATCATGTTTTACGTGTAT
CGGGAACAGGGAAAGATGTGTTGGTCATGAATGGGAAGATTCTTGGACCC
AGCGTGGTAAGCACGCCTAAAAATGTTGTTTCTACGGAGGGAGGACAGGA
GGGGAGCAGCTGCAGCGGCAAAGCGGATCTGTTGTCGTTGTTTGACGGAA
ATAACAAGATCGGACTTGGAAGAGACGATGCCTCGTCATCTACCGCTGCT
GCTCCTGCCGCAGAGCAGAACGGGACGTTGCGAGGCCGGTCTAATTTGGG
TCGTCCCCCCACATTCTCCAGCCTGACAGCTTCCGGCACTACCACCACCT
GCAAGCCTATTTTACTGAGTAACTTCCAAGGGGAGCTTTGGCTGGAAAAA
GGCAGCATCGCCTTTGTCATTCGTCGAGAGAAAACCCCGTCGGTGATTGC
GACAGCTCCAACAGCACCAGCACCAGCAACACCAACACCTGTCGGTCCGC
TTGCTGCCGTCCGCAAAGGCATGCGCCGAACCCTATCCCGCCGCAGCTCC
GTCTCCAACCTCTCTTCTCCCCCCCTCTTTCCCCCCGTCTTCTCTTCAGC
TGCCTCGTCAGAAGTCGAAATGCCCGCAAAGGGATTTCCCTCCAATGTTT
CGGCTTCCTCCTCCAATACGAAGCCTCTGCCCCGTTTGCAGCTCTCGTGG
GACACAACGGAGGAGGACTCTGCCCATGTCCACCCCCCACACGCTCAACC
TGTCATATCCATGTTACGGACGACAACGCTCCCTTCCCGAGTCTCCTCTC
AGCGGCCAACGGCGGGAGCAAAAGCAGCAGGAGGGCGATTAGGAGCTGCG
ACGAGACGCCCCATGGCAAGGGGGGCTCAAACCGTTACGTTGACGGATTT
TCTGGATTCGGCTTGTGGAGAGATAGATGTTGAAGCAGCAAAGAAGGCGC
TGGCTAGAGGAGAGACACTTGCTGGGTTTTTGTCTCGACAGGCTTTGGCG
GAGGAATCTGTCTCGGCTGATGAGGATAGAGGAGGGGGGGGAAGAGAGAA
TGGGAGAGGAGGAAGGCCTGGTACCCCTCCTTCCTTGAAGCAGCGGATTA
CCGATTCGGTGAGCAGTCCCTTGACGGCACTGTTTTCGAGGGAGGAGGTA
AAACCATCGAGCTTTTTGAAGGAGGAAGAGGGGATGAAAATGGGTTTGGA
TGAAGGAGGGAGAGGAGGTCAGCAAAAGAAGGGGAAGGAGGAGGAACGAA
AGCGGCAACCGACAGCTCTGGAGCTTATGTTTATGGAGGGGTCTGGTGAT
GGGCAGGGTATGAAGGGAGGCGACGAGGAGGTAACACATGGAGATGAGCA
AGTTTAGGAGGGTCGGTGGAGAGCGATACATATAGATAGACATGTGGGCG
TTCAGGGGTTCCTGAGCTAAGCTTCTCTATTGTTTTAACTCTGTGCACCG
GGTGGTTGTGTCGGTCCTTAGTGTAGTTACAACAAAAGACGGGAGAGATA
CAGGTAGGATAGAATACAGCGTGTATAAAGAAACATAAGGCACATTCGAT
GGCCACGATTTTGCACTTAGAAATGGATAAACGTAGATGATATAAAGGAA
AGCATCAGTTTTGCAGAATTGGAATAAGTATTTTCTCTTGATT

protein sequence of jgi.p|Nanoce1779_2|593493

>mRNA_6018-protein ID=mRNA_6018-protein|Name=jgi.p|Nanoce1779_2|593493|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MSVAAGQSLRLNSSATTSQKQLKPRHHVLRVSGTGKDVLVMNGKILGPSV
VSTPKNVVSTEGGQEGSSCSGKADLLSLFDGNNKIGLGRDDASSSTAAAP
AAEQNGTLRGRSNLGRPPTFSSLTASGTTTTCKPILLSNFQGELWLEKGS
IAFVIRREKTPSVIATAPTAPAPATPTPVGPLAAVRKGMRRTLSRRSSVS
NLSSPPLFPPVFSSAASSEVEMPAKGFPSNVSASSSNTKPLPRLQLSWDT
TEEDSAHVHPPHAQPVISMLRTTTLPSRVSSQRPTAGAKAAGGRLGAATR
RPMARGAQTVTLTDFLDSACGEIDVEAAKKALARGETLAGFLSRQALAEE
SVSADEDRGGGGRENGRGGRPGTPPSLKQRITDSVSSPLTALFSREEVKP
SSFLKEEEGMKMGLDEGGRGGQQKKGKEEERKRQPTALELMFMEGSGDGQ
GMKGGDEEVTHGDEQV*

mRNA from alignment at scaffold_14:328363..330155+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6018 ID=mRNA_6018|Name=jgi.p|Nanoce1779_2|593493|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp|location=Sequence derived from alignment at scaffold_14:328363..330155+ (Nannochloropsis oceanica)
GGGAGAGGAAGGGACGGGGGGAGCAGAGGGTAGGTTGCATAAATCGAAGA
GTGGGGGGAGCTTGCGGTTGCTGAGCTTGGCGACGATTAGGCATCAATTA
GAAGGGATGAGCGTGGCTGCAGGGCAATCGCTCCGATTGAATAGCTCGGC
TACTACCTCACAGAAGCAATTAAAGCCCCGGCATCATGTTTTACGTGTAT
CGGGAACAGGGAAAGATGTGTTGGTCATGAATGGGAAGATTCTTGGACCC
AGCGTGGTAAGCACGCCTAAAAATGTTGTTTCTACGGAGGGAGGACAGGA
GGGGAGCAGCTGCAGCGGCAAAGCGGATCTGTTGTCGTTGTTTGACGGAA
ATAACAAGATCGGACTTGGAAGAGACGATGCCTCGTCATCTACCGCTGCT
GCTCCTGCCGCAGAGCAGAACGGGACGTTGCGAGGCCGGTCTAATTTGGG
TCGTCCCCCCACATTCTCCAGCCTGACAGCTTCCGGCACTACCACCACCT
GCAAGCCTATTTTACTGAGTAACTTCCAAGGGGAGCTTTGGCTGGAAAAA
GGCAGCATCGCCTTTGTCATTCGTCGAGAGAAAACCCCGTCGGTGATTGC
GACAGCTCCAACAGCACCAGCACCAGCAACACCAACACCTGTCGGTCCGC
TTGCTGCCGTCCGCAAAGGCATGCGCCGAACCCTATCCCGCCGCAGCTCC
GTCTCCAACCTCTCTTCTCCCCCCCTCTTTCCCCCCGTCTTCTCTTCAGC
TGCCTCGTCAGAAGTCGAAATGCCCGCAAAGGGATTTCCCTCCAATGTTT
CGGCTTCCTCCTCCAATACGAAGCCTCTGCCCCGTTTGCAGCTCTCGTGG
GACACAACGGAGGAGGACTCTGCCCATGTCCACCCCCCACACGCTCAACC
TGTCATATCCATGTTACGGACGACAACGCTCCCTTCCCGAGTCTCCTCTC
AGCGGCCAACGGCGGGAGCAAAAGCAGCAGGAGGGCGATTAGGAGCTGCG
ACGAGACGCCCCATGGCAAGGGGGGCTCAAACCGTTACGTTGACGGATTT
TCTGGATTCGGCTTGTGGAGAGATAGATGTTGAAGCAGCAAAGAAGGCGC
TGGCTAGAGGAGAGACACTTGCTGGGTTTTTGTCTCGACAGGCTTTGGCG
GAGGAATCTGTCTCGGCTGATGAGGATAGAGGAGGGGGGGGAAGAGAGAA
TGGGAGAGGAGGAAGGCCTGGTACCCCTCCTTCCTTGAAGCAGCGGATTA
CCGATTCGGTGAGCAGTCCCTTGACGGCACTGTTTTCGAGGGAGGAGGTA
AAACCATCGAGCTTTTTGAAGGAGGAAGAGGGGATGAAAATGGGTTTGGA
TGAAGGAGGGAGAGGAGGTCAGCAAAAGAAGGGGAAGGAGGAGGAACGAA
AGCGGCAACCGACAGCTCTGGAGCTTATGTTTATGGAGGGGTCTGGTGAT
GGGCAGGGTATGAAGGGAGGCGACGAGGAGGTAACACATGGAGATGAGCA
AGTTTAGGAGGGTCGGTGGAGAGCGATACATATAGATAGACATGTGGGCG
TTCAGGGGTTCCTGAGCTAAGCTTCTCTATTGTTTTAACTCTGTGCACCG
GGTGGTTGTGTCGGTCCTTAGTGTAGTTACAACAAAAGACGGGAGAGATA
CAGGTAGGATAGAATACAGCGTGTATAAAGAAACATAAGGCACATTCGAT
GGCCACGATTTTGCACTTAGAAATGGATAAACGTAGATGATATAAAGGAA
AGCATCAGTTTTGCAGAATTGGAATAAGTATTTTCTCTTGATT

Coding sequence (CDS) from alignment at scaffold_14:328363..330155+

>mRNA_6018 ID=mRNA_6018|Name=jgi.p|Nanoce1779_2|593493|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at scaffold_14:328363..330155+ (Nannochloropsis oceanica)
ATGAGCGTGGCTGCAGGGCAATCGCTCCGATTGAATAGCTCGGCTACTAC
CTCACAGAAGCAATTAAAGCCCCGGCATCATGTTTTACGTGTATCGGGAA
CAGGGAAAGATGTGTTGGTCATGAATGGGAAGATTCTTGGACCCAGCGTG
GTAAGCACGCCTAAAAATGTTGTTTCTACGGAGGGAGGACAGGAGGGGAG
CAGCTGCAGCGGCAAAGCGGATCTGTTGTCGTTGTTTGACGGAAATAACA
AGATCGGACTTGGAAGAGACGATGCCTCGTCATCTACCGCTGCTGCTCCT
GCCGCAGAGCAGAACGGGACGTTGCGAGGCCGGTCTAATTTGGGTCGTCC
CCCCACATTCTCCAGCCTGACAGCTTCCGGCACTACCACCACCTGCAAGC
CTATTTTACTGAGTAACTTCCAAGGGGAGCTTTGGCTGGAAAAAGGCAGC
ATCGCCTTTGTCATTCGTCGAGAGAAAACCCCGTCGGTGATTGCGACAGC
TCCAACAGCACCAGCACCAGCAACACCAACACCTGTCGGTCCGCTTGCTG
CCGTCCGCAAAGGCATGCGCCGAACCCTATCCCGCCGCAGCTCCGTCTCC
AACCTCTCTTCTCCCCCCCTCTTTCCCCCCGTCTTCTCTTCAGCTGCCTC
GTCAGAAGTCGAAATGCCCGCAAAGGGATTTCCCTCCAATGTTTCGGCTT
CCTCCTCCAATACGAAGCCTCTGCCCCGTTTGCAGCTCTCGTGGGACACA
ACGGAGGAGGACTCTGCCCATGTCCACCCCCCACACGCTCAACCTGTCAT
ATCCATGTTACGGACGACAACGCTCCCTTCCCGAGTCTCCTCTCAGCGGC
CAACGGCGGGAGCAAAAGCAGCAGGAGGGCGATTAGGAGCTGCGACGAGA
CGCCCCATGGCAAGGGGGGCTCAAACCGTTACGTTGACGGATTTTCTGGA
TTCGGCTTGTGGAGAGATAGATGTTGAAGCAGCAAAGAAGGCGCTGGCTA
GAGGAGAGACACTTGCTGGGTTTTTGTCTCGACAGGCTTTGGCGGAGGAA
TCTGTCTCGGCTGATGAGGATAGAGGAGGGGGGGGAAGAGAGAATGGGAG
AGGAGGAAGGCCTGGTACCCCTCCTTCCTTGAAGCAGCGGATTACCGATT
CGGTGAGCAGTCCCTTGACGGCACTGTTTTCGAGGGAGGAGGTAAAACCA
TCGAGCTTTTTGAAGGAGGAAGAGGGGATGAAAATGGGTTTGGATGAAGG
AGGGAGAGGAGGTCAGCAAAAGAAGGGGAAGGAGGAGGAACGAAAGCGGC
AACCGACAGCTCTGGAGCTTATGTTTATGGAGGGGTCTGGTGATGGGCAG
GGTATGAAGGGAGGCGACGAGGAGGTAACACATGGAGATGAGCAAGTTTA
G

Synonyms

Publications