jgi.p|Nanoce1779_2|593478, mRNA_6013 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593478
Unique NamemRNA_6013
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1008
Alignment locationscaffold_14:309620..310627 +

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Properties
Property NameValue
TranscriptId593564
TrackFilteredModels2
ProteinId593478
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:309620..310627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593478gene_6013Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593478mRNA_6013-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6013CDS_6013Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6013 ID=mRNA_6013|Name=jgi.p|Nanoce1779_2|593478|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
GCTCTTCTCCTCCTGCCACCCCTTCCTCCTCCTCCTCATCCTCATCCTCC
TCCTTGCTCTTGTCTTTCTGCCCCCGCTGCTGCTGCTGCTGCTGCTTTTT
CGTCAGCGTTACAGCTTCCTCCTCTTCCACATCCACTTCGTCTTTCATCT
CCTCCACTCGATGCTCTCGCCCGCGCTTCTCCTGCTTTCTCCCCTCATCT
CTCTCTACCGACACTTCCCGCTCCATCAGTTCCTCCATCCCTTCCTCCCC
ACCAAAACCGACCTCCCTCAAGGCCCTCCTCACAGGTGGCGCCCCAAACT
CTGCCAATAGCGCCAAGACCCATGTGACAAAGGGATTCTGCAATCGATTT
AAGTCATGTGCTTTTAACAAGGAGGGAATGACTGAGACCTTCTTCAAGGC
AACTGCTTGGGTTGCCGTGTGCCGAAGTTCCTCCTGGAGACCTAAGAGCC
AGGAGCGAACTAGAGGAGTGCATTGATCAAGCTGCGGTTCAAGGATGTTT
TTCATCCCGGCTTCGAGCTTTTCTTTGAGGACATGTGGGGCGATTTTTTG
CTGCCGGTCGAAGACCGAGGCGTCTTGGTCTTGCTCGGCCTCTTCAATAG
CTTGGCGGACTTCATGGAGGGTGGCTTGGGCTATCAGGTTTAGATTGAAG
CTCGCCCAAGGACCCTTGGTCACTTTCCAATCCCGAAGCAATACCACGGC
TTCCAAGGCCTTGTCCATTGCACCGGTGGCTACCACAAATAAGGCGAGGG
AGAGCTTTGTGCAAGGGTGCATATCACGGAGCTCACGCGAGGCATTGGCG
TAAAGAGTGCTTGCAAGCTGGAGCCAGTTCATCTGATTATCCACTGAGCC
CTTTGCGGTCTTGAAATACGAGGCTGCATGGCATTGGATGGCGAGCTCGA
TGGCCTGGTTCTTGGGGTTGGGCGCAGTCATGGTAGGGCGTGGCCGTTGC
TCGGGGCCTTGGCGATTGTTGATGAAGCTTGGGGTGGGTTCTATAAGGAC
GGACGGCT
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protein sequence of jgi.p|Nanoce1779_2|593478

>mRNA_6013-protein ID=mRNA_6013-protein|Name=jgi.p|Nanoce1779_2|593478|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MFFIPASSFSLRTCGAIFCCRSKTEASWSCSASSIAWRTSWRVAWAIRFR
LKLAQGPLVTFQSRSNTTASKALSIAPVATTNKARESFVQGCISRSSREA
LA*
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mRNA from alignment at scaffold_14:309620..310627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6013 ID=mRNA_6013|Name=jgi.p|Nanoce1779_2|593478|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp|location=Sequence derived from alignment at scaffold_14:309620..310627+ (Nannochloropsis oceanica)
GCTCTTCTCCTCCTGCCACCCCTTCCTCCTCCTCCTCATCCTCATCCTCC
TCCTTGCTCTTGTCTTTCTGCCCCCGCTGCTGCTGCTGCTGCTGCTTTTT
CGTCAGCGTTACAGCTTCCTCCTCTTCCACATCCACTTCGTCTTTCATCT
CCTCCACTCGATGCTCTCGCCCGCGCTTCTCCTGCTTTCTCCCCTCATCT
CTCTCTACCGACACTTCCCGCTCCATCAGTTCCTCCATCCCTTCCTCCCC
ACCAAAACCGACCTCCCTCAAGGCCCTCCTCACAGGTGGCGCCCCAAACT
CTGCCAATAGCGCCAAGACCCATGTGACAAAGGGATTCTGCAATCGATTT
AAGTCATGTGCTTTTAACAAGGAGGGAATGACTGAGACCTTCTTCAAGGC
AACTGCTTGGGTTGCCGTGTGCCGAAGTTCCTCCTGGAGACCTAAGAGCC
AGGAGCGAACTAGAGGAGTGCATTGATCAAGCTGCGGTTCAAGGATGTTT
TTCATCCCGGCTTCGAGCTTTTCTTTGAGGACATGTGGGGCGATTTTTTG
CTGCCGGTCGAAGACCGAGGCGTCTTGGTCTTGCTCGGCCTCTTCAATAG
CTTGGCGGACTTCATGGAGGGTGGCTTGGGCTATCAGGTTTAGATTGAAG
CTCGCCCAAGGACCCTTGGTCACTTTCCAATCCCGAAGCAATACCACGGC
TTCCAAGGCCTTGTCCATTGCACCGGTGGCTACCACAAATAAGGCGAGGG
AGAGCTTTGTGCAAGGGTGCATATCACGGAGCTCACGCGAGGCATTGGCG
TAAAGAGTGCTTGCAAGCTGGAGCCAGTTCATCTGATTATCCACTGAGCC
CTTTGCGGTCTTGAAATACGAGGCTGCATGGCATTGGATGGCGAGCTCGA
TGGCCTGGTTCTTGGGGTTGGGCGCAGTCATGGTAGGGCGTGGCCGTTGC
TCGGGGCCTTGGCGATTGTTGATGAAGCTTGGGGTGGGTTCTATAAGGAC
GGACGGCT
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Coding sequence (CDS) from alignment at scaffold_14:309620..310627+

>mRNA_6013 ID=mRNA_6013|Name=jgi.p|Nanoce1779_2|593478|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_14:309620..310627+ (Nannochloropsis oceanica)
ATGTTTTTCATCCCGGCTTCGAGCTTTTCTTTGAGGACATGTGGGGCGAT
TTTTTGCTGCCGGTCGAAGACCGAGGCGTCTTGGTCTTGCTCGGCCTCTT
CAATAGCTTGGCGGACTTCATGGAGGGTGGCTTGGGCTATCAGGTTTAGA
TTGAAGCTCGCCCAAGGACCCTTGGTCACTTTCCAATCCCGAAGCAATAC
CACGGCTTCCAAGGCCTTGTCCATTGCACCGGTGGCTACCACAAATAAGG
CGAGGGAGAGCTTTGTGCAAGGGTGCATATCACGGAGCTCACGCGAGGCA
TTGGCGTAA
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Synonyms
Publications