jgi.p|Nanoce1779_2|593476, mRNA_6012 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593476
Unique NamemRNA_6012
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1086
Alignment locationscaffold_14:307132..308353 +

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Properties
Property NameValue
TranscriptId593562
TrackFilteredModels2
ProteinId593476
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:307132..308353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593476gene_6012Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593476mRNA_6012-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6012CDS_6012Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6012 ID=mRNA_6012|Name=jgi.p|Nanoce1779_2|593476|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
AGACAGTTTCTCAATCTATGGGTAACAACGCGGGGGGCTTGCTCTTTGCA
TTCGGTATCATCTCGGACGTGCAGTACGCCGAACGGGGCGATGGGCACAA
TTACACGAAAACCAAGAAAAGGTATTACCTCGCGACATTGCTAGGCTTGC
GACGCGCCGTTGCAGCTTGGCTCGGTGAAACCGCACGATTGCCGTCACCT
TTCTTTGTCTTGCAACTAGGGGATCTTATTGATGGGTACGCGGCTACCAC
AACGCTTGGCTCGGAGGCATCATTGGCGCGTGTTTTAGAGGAGTTCGAAC
ATCTTGCGCACTGTCTTGTGCATCACTGTTTGGGTAACCACGAACTCTAC
AACTTCCCCTCGCACGCATTCTGGGCCAACCGTCTAGCTTGCTTTCGGGA
TCAGCAACCGCCTGTCTTCCTTAATGCGCCAGCACCACCCCGGGACTCCT
GTTATTACGCCTTTTCGCCTCATCCAAATTTCTGTCTTGTGAATCTCGAC
ACGTACGACATTTCGGTGTTAGGGTCAATGCCCGATAGCTTGGAGGGAAG
TGAGGCGGAAAGGTACTTGCACCGGAACCCAAATGAGGATCGCAATAGTC
CCTTGGGTCTCGAGGGTTTAGATAAGCGTTTTGTACGTTTTGGCGGCGGT
GTGGGCTCTATTCAACTGGCCTGGCTACGAGCGACTTTACTTGCAGCGCA
GAACGCGGGTTGCAAGCATATCGTGGTGTTTTCGCACATCCCACTCCATC
CGAATGTATGCAAACCGGATTGTCTGCTTTGGAACTTCCAAGAAGTCTTG
AACGCGCTTGAGGAGCATCCCGCCCTTGTAAAACTGTGCCTCGCTGGGCA
CTCGCATGAATCCCGGGTTGTGCACGATGAAGGCAGTGGGATTGTGTATT
ACACGCTGGACTCGCCATTGGAGCAACCGCCGAACGAGGACGCGTTTAGC
ACGGCACGTGCGTACGCTGATCGTATCGAGATAGATGGACATGGAGCGAA
TTTAAGTGTTGTATGTAAATTTAGGGTAACAGAATGCGCAGTTCATAAAA
AGATGTAAGAAGAAGCCAATATCCACGTATTTTCAA
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protein sequence of jgi.p|Nanoce1779_2|593476

>mRNA_6012-protein ID=mRNA_6012-protein|Name=jgi.p|Nanoce1779_2|593476|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MGNNAGGLLFAFGIISDVQYAERGDGHNYTKTKKRYYLATLLGLRRAVAA
WLGETARLPSPFFVLQLGDLIDGYAATTTLGSEASLARVLEEFEHLAHCL
VHHCLGNHELYNFPSHAFWANRLACFRDQQPPVFLNAPAPPRDSCYYAFS
PHPNFCLVNLDTYDISVLGSMPDSLEGSEAERYLHRNPNEDRNSPLGLEG
LDKRFVRFGGGVGSIQLAWLRATLLAAQNAGCKHIVVFSHIPLHPNVCKP
DCLLWNFQEVLNALEEHPALVKLCLAGHSHESRVVHDEGSGIVYYTLDSP
LEQPPNEDAFSTARAYADRIEIDGHGANLSVVCKFRVTECAVHKKM*
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mRNA from alignment at scaffold_14:307132..308353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6012 ID=mRNA_6012|Name=jgi.p|Nanoce1779_2|593476|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp|location=Sequence derived from alignment at scaffold_14:307132..308353+ (Nannochloropsis oceanica)
AGACAGTTTCTCAATCTATGGGTAACAACGCGGGGGGCTTGCTCTTTGCA
TTCGGTATCATCTCGGACGTGCAGTACGCCGAACGGGGTAAGCGTGTTGT
AATGGAATGGACAATGAATTAGATGGAACGAGCTTGTGTAATATGGTGAG
GGTGCTCGTATTCATGAATGTATGTATACATATTTCAAACCAACTCTCCG
TCTCCACTCTTAAAAATTCACAGGCGATGGGCACAATTACACGAAAACCA
AGAAAAGGTATTACCTCGCGACATTGCTAGGCTTGCGACGCGCCGTTGCA
GCTTGGCTCGGTGAAACCGCACGATTGCCGTCACCTTTCTTTGTCTTGCA
ACTAGGGGATCTTATTGATGGGTACGCGGCTACCACAACGCTTGGCTCGG
AGGCATCATTGGCGCGTGTTTTAGAGGAGTTCGAACATCTTGCGCACTGT
CTTGTGCATCACTGTTTGGGTAACCACGAACTCTACAACTTCCCCTCGCA
CGCATTCTGGGCCAACCGTCTAGCTTGCTTTCGGGATCAGCAACCGCCTG
TCTTCCTTAATGCGCCAGCACCACCCCGGGACTCCTGTTATTACGCCTTT
TCGCCTCATCCAAATTTCTGTCTTGTGAATCTCGACACGTACGACATTTC
GGTGTTAGGGTCAATGCCCGATAGCTTGGAGGGAAGTGAGGCGGAAAGGT
ACTTGCACCGGAACCCAAATGAGGATCGCAATAGTCCCTTGGGTCTCGAG
GGTTTAGATAAGCGTTTTGTACGTTTTGGCGGCGGTGTGGGCTCTATTCA
ACTGGCCTGGCTACGAGCGACTTTACTTGCAGCGCAGAACGCGGGTTGCA
AGCATATCGTGGTGTTTTCGCACATCCCACTCCATCCGAATGTATGCAAA
CCGGATTGTCTGCTTTGGAACTTCCAAGAAGTCTTGAACGCGCTTGAGGA
GCATCCCGCCCTTGTAAAACTGTGCCTCGCTGGGCACTCGCATGAATCCC
GGGTTGTGCACGATGAAGGCAGTGGGATTGTGTATTACACGCTGGACTCG
CCATTGGAGCAACCGCCGAACGAGGACGCGTTTAGCACGGCACGTGCGTA
CGCTGATCGTATCGAGATAGATGGACATGGAGCGAATTTAAGTGTTGTAT
GTAAATTTAGGGTAACAGAATGCGCAGTTCATAAAAAGATGTAAGAAGAA
GCCAATATCCACGTATTTTCAA
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Coding sequence (CDS) from alignment at scaffold_14:307132..308353+

>mRNA_6012 ID=mRNA_6012|Name=jgi.p|Nanoce1779_2|593476|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at scaffold_14:307132..308353+ (Nannochloropsis oceanica)
ATGGGTAACAACGCGGGGGGCTTGCTCTTTGCATTCGGTATCATCTCGGA
CGTGCAGTACGCCGAACGGGGCGATGGGCACAATTACACGAAAACCAAGA
AAAGGTATTACCTCGCGACATTGCTAGGCTTGCGACGCGCCGTTGCAGCT
TGGCTCGGTGAAACCGCACGATTGCCGTCACCTTTCTTTGTCTTGCAACT
AGGGGATCTTATTGATGGGTACGCGGCTACCACAACGCTTGGCTCGGAGG
CATCATTGGCGCGTGTTTTAGAGGAGTTCGAACATCTTGCGCACTGTCTT
GTGCATCACTGTTTGGGTAACCACGAACTCTACAACTTCCCCTCGCACGC
ATTCTGGGCCAACCGTCTAGCTTGCTTTCGGGATCAGCAACCGCCTGTCT
TCCTTAATGCGCCAGCACCACCCCGGGACTCCTGTTATTACGCCTTTTCG
CCTCATCCAAATTTCTGTCTTGTGAATCTCGACACGTACGACATTTCGGT
GTTAGGGTCAATGCCCGATAGCTTGGAGGGAAGTGAGGCGGAAAGGTACT
TGCACCGGAACCCAAATGAGGATCGCAATAGTCCCTTGGGTCTCGAGGGT
TTAGATAAGCGTTTTGTACGTTTTGGCGGCGGTGTGGGCTCTATTCAACT
GGCCTGGCTACGAGCGACTTTACTTGCAGCGCAGAACGCGGGTTGCAAGC
ATATCGTGGTGTTTTCGCACATCCCACTCCATCCGAATGTATGCAAACCG
GATTGTCTGCTTTGGAACTTCCAAGAAGTCTTGAACGCGCTTGAGGAGCA
TCCCGCCCTTGTAAAACTGTGCCTCGCTGGGCACTCGCATGAATCCCGGG
TTGTGCACGATGAAGGCAGTGGGATTGTGTATTACACGCTGGACTCGCCA
TTGGAGCAACCGCCGAACGAGGACGCGTTTAGCACGGCACGTGCGTACGC
TGATCGTATCGAGATAGATGGACATGGAGCGAATTTAAGTGTTGTATGTA
AATTTAGGGTAACAGAATGCGCAGTTCATAAAAAGATGTAAATGGGTAAC
AACGCGGGGGGCTTGCTCTTTGCATTCGGTATCATCTCGGACGTGCAGTA
CGCCGAACGGGGCGATGGGCACAATTACACGAAAACCAAGAAAAGGTATT
ACCTCGCGACATTGCTAGGCTTGCGACGCGCCGTTGCAGCTTGGCTCGGT
GAAACCGCACGATTGCCGTCACCTTTCTTTGTCTTGCAACTAGGGGATCT
TATTGATGGGTACGCGGCTACCACAACGCTTGGCTCGGAGGCATCATTGG
CGCGTGTTTTAGAGGAGTTCGAACATCTTGCGCACTGTCTTGTGCATCAC
TGTTTGGGTAACCACGAACTCTACAACTTCCCCTCGCACGCATTCTGGGC
CAACCGTCTAGCTTGCTTTCGGGATCAGCAACCGCCTGTCTTCCTTAATG
CGCCAGCACCACCCCGGGACTCCTGTTATTACGCCTTTTCGCCTCATCCA
AATTTCTGTCTTGTGAATCTCGACACGTACGACATTTCGGTGTTAGGGTC
AATGCCCGATAGCTTGGAGGGAAGTGAGGCGGAAAGGTACTTGCACCGGA
ACCCAAATGAGGATCGCAATAGTCCCTTGGGTCTCGAGGGTTTAGATAAG
CGTTTTGTACGTTTTGGCGGCGGTGTGGGCTCTATTCAACTGGCCTGGCT
ACGAGCGACTTTACTTGCAGCGCAGAACGCGGGTTGCAAGCATATCGTGG
TGTTTTCGCACATCCCACTCCATCCGAATGTATGCAAACCGGATTGTCTG
CTTTGGAACTTCCAAGAAGTCTTGAACGCGCTTGAGGAGCATCCCGCCCT
TGTAAAACTGTGCCTCGCTGGGCACTCGCATGAATCCCGGGTTGTGCACG
ATGAAGGCAGTGGGATTGTGTATTACACGCTGGACTCGCCATTGGAGCAA
CCGCCGAACGAGGACGCGTTTAGCACGGCACGTGCGTACGCTGATCGTAT
CGAGATAGATGGACATGGAGCGAATTTAAGTGTTGTATGTAAATTTAGGG
TAACAGAATGCGCAGTTCATAAAAAGATGTAA
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Synonyms
Publications