jgi.p|Nanoce1779_2|671686, mRNA_6010 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671686
Unique NamemRNA_6010
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1193
Alignment locationscaffold_14:302340..303885 -

Link to JBrowse

Properties
Property NameValue
TranscriptId671772
TrackFilteredModels2
ProteinId671686
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:302340..303885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671686gene_6010Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671686mRNA_6010-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6010CDS_6010Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6010 ID=mRNA_6010|Name=jgi.p|Nanoce1779_2|671686|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
ACAGCAACACACGCAGGCCTAGACCCAAGCACATAGCACCATGGCTCCCT
ACCCCTTGTGCTTCGTCCCGCAGGCCTCCTCAATTAATTTCCCGCCCACA
TCCGAGCGAGTGACTGGCCTATTCGCTTCCGCTACACCAGACGAGCACGA
GCGGGTCCAGAAGCCGCAGCAGCAGCCCCAGCACCACCACCGTCGTGAAC
TTCTTCATAAGGCCTTTGTGCTCGGGGGCCTACTCCTCGGGGGCACCGCG
GTGCCTACTCCACTCGTTCAGCCGGGAGATGGAAGGTTGAATTTCGTGCC
GGCTGCTGCGGGCGCGGCAGTCTTGAATGACACTCCCCTCCCAGCTGTCG
AAGTCGAGGCTATGTCCACCGGTAGGGCCGCTGATTTTATTAAGCTGAAT
TGTCAAGGGATTTTGAAGGCGTATAGGGAGACAGGTCCCATTCCCTCTTT
CCTGTATCGGGGTGAGAATGTGAACAGGCCTTCAGTGATGAAGTGCATGC
CGGACCTGATGGACCCTTCGACGTATGTAGAAGGCCAAGAAGCGGTCGAG
TTCTTCGGAAAAGTGGAAACGGCAATGAAGGATTTACCGGTCAAACCTAG
CGTCGGCCACCTAGCCACCAGTGACATGCGCAGGGCGGCTGCCTGGGGTA
CCCCTGTATCAGTCTGGCCCATCGGCAAAGAGATTCACTATGCGTGGCTA
AATGACGCCCAAAACTTCTGGCCTGTACCTCCTGAAAAACGCGGCATCAC
TGTCAAGGATATTAGCGCGTGTATAAACAGAGAAATTCAGGTGGATAAGG
GCTTGGACATGGCAGTTAAGATGGGCCACGAGGTGATGCTCCAAACGGGG
GATCACGGTTTCGTGGTCATCCCTGTTGCCTATGAGAGGGAGTTAAGGGC
GAGATTGAATTTGGGCTATGAGTAGAGATGAAGGACGGGAGGGGTGGAGG
GAGACAAGGAAAGGGAAGGAAAGGGGTGTGTATATAGCGGGGAAGGGGAG
GATGCGGGGGGCCGAGCGTGTGTGTGTTGTCTGATAATGCTGCCTTTCAG
TAGCAGCAGCATCACCAGTAGCGAAAGCAACACCACCAAAACGAGATTAA
ACCAGCCATCAGAAAGAGGGAAGAGGAAAGAAATGCGAGGTAGAAAAGAA
GGAAAGCAGAAGTCAGGGAGAGAAAAGAAAGGACTGGTCCCTC
back to top

protein sequence of jgi.p|Nanoce1779_2|671686

>mRNA_6010-protein ID=mRNA_6010-protein|Name=jgi.p|Nanoce1779_2|671686|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MAPYPLCFVPQASSINFPPTSERVTGLFASATPDEHERVQKPQQQPQHHH
RRELLHKAFVLGGLLLGGTAVPTPLVQPGDGRLNFVPAAAGAAVLNDTPL
PAVEVEAMSTGRAADFIKLNCQGILKAYRETGPIPSFLYRGENVNRPSVM
KCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLPVKPSVGHLATSDMRRAA
AWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQ
VDKGLDMAVKMGHEVMLQTGDHGFVVIPVAYERELRARLNLGYE*
back to top

mRNA from alignment at scaffold_14:302340..303885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6010 ID=mRNA_6010|Name=jgi.p|Nanoce1779_2|671686|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp|location=Sequence derived from alignment at scaffold_14:302340..303885- (Nannochloropsis oceanica)
ACAGCAACACACGCAGGCCTAGACCCAAGCACATAGCACCATGGCTCCCT
ACCCCTTGTGCTTCGTCCCGCAGGCCTCCTCAATTAATTTCCCGCCCACA
TCCGAGCGAGTGACTGGCCTATTCGCTTCCGCTACACCAGACGAGCACGA
GCGGGTCCAGAAGCCGCAGCAGCAGCCCCAGCACCACCACCGTCGTGAAC
TTCTTCATAAGGCCTTTGTGCTCGGGGGCCTACTCCTCGGGGGCACCGCG
GTGCCTACTCCACTCGTTCAGCCGGGAGATGGAAGGTTGAATTTCGTGCC
GGCTGCTGCGGGCGCGGCAGTCTTGAATGACACTCCCCTCCCAGCTGTCG
AAGTCGAGGCTATGTCCACCGGTAGGGCCGCTGATTTTATTAAGCTGAAT
TGTCAAGGGATTTTGAAGGCGTATAGGGAGACAGGTCCCATTCCCTCTTT
CCTGTATCGGGGTGAGAATGTGAACAGGCCTTCAGTGATGAAGTGCATGC
CGGACCTGATGGACCCTTCGACGTATGTAGAAGGCCAAGAAGCGGTCGAG
TTCTTCGGAAAAGTGGAAACGGCAATGAAGGATTTACCGGTCAAGTAAGT
TGTGTGGTGTGTGGGCGGGCTGGGTGCGCTCGCGTATATGTGTAAGAATG
TATGTATGTGAGAGAGAGGGGAAGGAGACATCACAGGGAAGGGGGTAAAG
GGGCATGCTGTGCTCCATCGAAGCCGTTCTAACCTGTCGCATTTCCTGCA
TCTTGTTGTTGCCTCCCCTCCTCTACTCCTCAAACATAGACCTAGCGTCG
GCCACCTAGCCACCAGTGACATGCGCAGGGCGGCTGCCTGGGGTACCCCT
GTATCAGTCTGGCCCATCGGTGAGTATCACAAAATAAAAATAAATTTATA
AACCTGTCCGACAACGTAAAAATCTTTTTAACATCCCAGGAAAGAAATGC
CTCTTCATGCTCGTTTCTGACTCCTCCTTTCCCTGCTCTCGTTTGTTCCT
CCCTTTCCTCCTTTCCCTCCCTGCCAGGCAAAGAGATTCACTATGCGTGG
CTAAATGACGCCCAAAACTTCTGGCCTGTACCTCCTGAAAAACGCGGCAT
CACTGTCAAGGATATTAGCGCGTGTATAAACAGAGAAATTCAGGTGGATA
AGGGCTTGGACATGGCAGTTAAGATGGGCCACGAGGTGATGCTCCAAACG
GGGGATCACGGTTTCGTGGTCATCCCTGTTGCCTATGAGAGGGAGTTAAG
GGCGAGATTGAATTTGGGCTATGAGTAGAGATGAAGGACGGGAGGGGTGG
AGGGAGACAAGGAAAGGGAAGGAAAGGGGTGTGTATATAGCGGGGAAGGG
GAGGATGCGGGGGGCCGAGCGTGTGTGTGTTGTCTGATAATGCTGCCTTT
CAGTAGCAGCAGCATCACCAGTAGCGAAAGCAACACCACCAAAACGAGAT
TAAACCAGCCATCAGAAAGAGGGAAGAGGAAAGAAATGCGAGGTAGAAAA
GAAGGAAAGCAGAAGTCAGGGAGAGAAAAGAAAGGACTGGTCCCTC
back to top

Coding sequence (CDS) from alignment at scaffold_14:302340..303885-

>mRNA_6010 ID=mRNA_6010|Name=jgi.p|Nanoce1779_2|671686|organism=Nannochloropsis oceanica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_14:302340..303885- (Nannochloropsis oceanica)
GCAAAGAGATTCACTATGCGTGGCTAAATGACGCCCAAAACTTCTGGCCT
GTACCTCCTGAAAAACGCGGCATCACTGTCAAGGATATTAGCGCGTGTAT
AAACAGAGAAATTCAGGTGGATAAGGGCTTGGACATGGCAGTTAAGATGG
GCCACGAGGTGATGCTCCAAACGGGGGATCACGGTTTCGTGGTCATCCCT
GTTGCCTATGAGAGGGAGTTAAGGGCGAGATTGAATTTGGGCTATGAGTA
GACCTAGCGTCGGCCACCTAGCCACCAGTGACATGCGCAGGGCGGCTGCC
TGGGGTACCCCTGTATCAGTCTGGCCCATCGATGGCTCCCTACCCCTTGT
GCTTCGTCCCGCAGGCCTCCTCAATTAATTTCCCGCCCACATCCGAGCGA
GTGACTGGCCTATTCGCTTCCGCTACACCAGACGAGCACGAGCGGGTCCA
GAAGCCGCAGCAGCAGCCCCAGCACCACCACCGTCGTGAACTTCTTCATA
AGGCCTTTGTGCTCGGGGGCCTACTCCTCGGGGGCACCGCGGTGCCTACT
CCACTCGTTCAGCCGGGAGATGGAAGGTTGAATTTCGTGCCGGCTGCTGC
GGGCGCGGCAGTCTTGAATGACACTCCCCTCCCAGCTGTCGAAGTCGAGG
CTATGTCCACCGGTAGGGCCGCTGATTTTATTAAGCTGAATTGTCAAGGG
ATTTTGAAGGCGTATAGGGAGACAGGTCCCATTCCCTCTTTCCTGTATCG
GGGTGAGAATGTGAACAGGCCTTCAGTGATGAAGTGCATGCCGGACCTGA
TGGACCCTTCGACGTATGTAGAAGGCCAAGAAGCGGTCGAGTTCTTCGGA
AAAGTGGAAACGGCAATGAAGGATTTACCGGTCAAGCAAAGAGATTCACT
ATGCGTGGCTAAATGACGCCCAAAACTTCTGGCCTGTACCTCCTGAAAAA
CGCGGCATCACTGTCAAGGATATTAGCGCGTGTATAAACAGAGAAATTCA
GGTGGATAAGGGCTTGGACATGGCAGTTAAGATGGGCCACGAGGTGATGC
TCCAAACGGGGGATCACGGTTTCGTGGTCATCCCTGTTGCCTATGAGAGG
GAGTTAAGGGCGAGATTGAATTTGGGCTATGAGTAGACCTAGCGTCGGCC
ACCTAGCCACCAGTGACATGCGCAGGGCGGCTGCCTGGGGTACCCCTGTA
TCAGTCTGGCCCATCGATGGCTCCCTACCCCTTGTGCTTCGTCCCGCAGG
CCTCCTCAATTAATTTCCCGCCCACATCCGAGCGAGTGACTGGCCTATTC
GCTTCCGCTACACCAGACGAGCACGAGCGGGTCCAGAAGCCGCAGCAGCA
GCCCCAGCACCACCACCGTCGTGAACTTCTTCATAAGGCCTTTGTGCTCG
GGGGCCTACTCCTCGGGGGCACCGCGGTGCCTACTCCACTCGTTCAGCCG
GGAGATGGAAGGTTGAATTTCGTGCCGGCTGCTGCGGGCGCGGCAGTCTT
GAATGACACTCCCCTCCCAGCTGTCGAAGTCGAGGCTATGTCCACCGGTA
GGGCCGCTGATTTTATTAAGCTGAATTGTCAAGGGATTTTGAAGGCGTAT
AGGGAGACAGGTCCCATTCCCTCTTTCCTGTATCGGGGTGAGAATGTGAA
CAGGCCTTCAGTGATGAAGTGCATGCCGGACCTGATGGACCCTTCGACGT
ATGTAGAAGGCCAAGAAGCGGTCGAGTTCTTCGGAAAAGTGGAAACGGCA
ATGAAGGATTTACCGGTCAAGCAAAGAGATTCACTATGCGTGGCTAAATG
ACGCCCAAAACTTCTGGCCTGTACCTCCTGAAAAACGCGGCATCACTGTC
AAGGATATTAGCGCGTGTATAAACAGAGAAATTCAGGTGGATAAGGGCTT
GGACATGGCAGTTAAGATGGGCCACGAGGTGATGCTCCAAACGGGGGATC
ACGGTTTCGTGGTCATCCCTGTTGCCTATGAGAGGGAGTTAAGGGCGAGA
TTGAATTTGGGCTATGAGTAGACCTAGCGTCGGCCACCTAGCCACCAGTG
ACATGCGCAGGGCGGCTGCCTGGGGTACCCCTGTATCAGTCTGGCCCATC
GATGGCTCCCTACCCCTTGTGCTTCGTCCCGCAGGCCTCCTCAATTAATT
TCCCGCCCACATCCGAGCGAGTGACTGGCCTATTCGCTTCCGCTACACCA
GACGAGCACGAGCGGGTCCAGAAGCCGCAGCAGCAGCCCCAGCACCACCA
CCGTCGTGAACTTCTTCATAAGGCCTTTGTGCTCGGGGGCCTACTCCTCG
GGGGCACCGCGGTGCCTACTCCACTCGTTCAGCCGGGAGATGGAAGGTTG
AATTTCGTGCCGGCTGCTGCGGGCGCGGCAGTCTTGAATGACACTCCCCT
CCCAGCTGTCGAAGTCGAGGCTATGTCCACCGGTAGGGCCGCTGATTTTA
TTAAGCTGAATTGTCAAGGGATTTTGAAGGCGTATAGGGAGACAGGTCCC
ATTCCCTCTTTCCTGTATCGGGGTGAGAATGTGAACAGGCCTTCAGTGAT
GAAGTGCATGCCGGACCTGATGGACCCTTCGACGTATGTAGAAGGCCAAG
AAGCGGTCGAGTTCTTCGGAAAAGTGGAAACGGCAATGAAGGATTTACCG
GTCAA
back to top
Synonyms
Publications