jgi.p|Nanoce1779_2|593452, mRNA_6006 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593452
Unique Name	mRNA_6006
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1850
Alignment location	scaffold_14:289394..291243 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593538
Track	FilteredModels2
ProteinId	593452

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:289394..291243 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593452	gene_6006	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593452	mRNA_6006-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6006	CDS_6006	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:289394..291243+
coding sequence from alignment at scaffold_14:289394..291243+

mRNA sequence

>mRNA_6006 ID=mRNA_6006|Name=jgi.p|Nanoce1779_2|593452|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp
AAAATCTACAGAGTCAATGCAAGCCACGGCAAAGCCCCGGCCTTTGGTGG
CGGCTTCACCTCAAGGATGTGCCACTTGTAGTGTCGCCTCATCCTGTGCA
GTCGGAGGCTGCGGTGCTGGAGCCAGCCAGAGGCACAGTAGCTCAGGGCC
CTCGTCATCCTCATCCTGTTCCTCGTCCTGCTCCAGCGCGGCCGCTTCTC
CATCCTCCTCGTCTCGTGCACTCCCGGTGTCACAATCCCAGCAGCTCGCC
TGTCGTGATGGCGTAGACGCGCCTTGCTCCAACTCATCGGCGCTCAAAGG
CCGCGCTCGCGTGCGAATGCTTGAGCAGCCAAAAAATAATCAAGAACACC
GTCACAAACAAGAGGAACGAGACCGGAAAGCTGTCCGACGGATCAGGCAC
GGACAGAAGAAGAAACAACGACGCGCCCACCTCAATCTATCCGCCAAAAT
CTTAGCGGGAATAGCGGGGTTCTGGGTCCTGGCAACTACTCTCCTGCTCA
CCGTCCCTGAGTCCCAAGGGTTCATGACCTACCTCCACTGGGTCCGCTGG
CCCATCTTTCGTGACCTGACCGACTTGATTTCTTTTCGCTTGCCGCATGC
ACGAAATATCCGCGTAAAGACTTCGGACGGTCTTGAGTTGGGGGGATGGC
ATGTGTTGCCTTCTCACAAGATAGCAGTGGAGGCTAGTCGTCTGCCCCCG
GGAAGTCGTGCAAGGGAAGATTTTTTTGACCTGGCATTAGCCAGGCCAAA
CACACGGGTTGTGATTTATTTCCACGGGAATGCTGCGACACGAGGGCAAT
TTAATCGGGTGGAATTGGTGAAGGCATTGGCAGCCACGATGGAGGCGCAT
GTGATTGCAATTGATTACAGGGGGTTTGGAGACTCGACTGGTTCCCCCTC
CGAGGCAGGGTTAGGGTTGGATGCAAGAGCGGTGTGGACGTGGGTTCAGG
AGAAGGTGGGAGGGAAGGAGGGGGAGGGAGGGCCAGCAAATATTTATTTG
TACGGGCATTCCTTAGGTTCCGGCGTGGCATTGGGCTTGGCTCATTATTT
GAGCGAGGAGGCAGAAGCAGCAGCAGCTGACGACAGCGACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTAAATGCTCTCTTCCTGTCGTCCCCACG
GGCCTTATTCTGGATGCCCCTTTCACCAACCTGAGTATGGCAGCACTGCA
TCACCCCTCCGCCCTCCCCTTCCGTCTTTTGCCTTTCGTTAAGAACGCCT
TGCTTCATAGCATGCATGAGCGTTTCCCCTCCCTCGATTACATTCAAAAG
TTAAATGAACCCATCCTGATATTGCATGGGCGGAGGGATAGAATGATCCC
TTTTTTCTTAGGACAGGAGTTGTATCACGCTGCACAACTCGCAAGGGTGA
GACGTCGTCCGGACTTACTCGAGGATTTGTGGTTTTCTGAGTTTCAGGAG
GCGGGTCATAATGATGTGTATGCGCATGGACAGTGGACGAATGACGTGGC
GGCGTTCATGTCGACGATGGAATTGGGGTTGGGGGAGAGGAAGGAATAGA
TGGGTGGGTTACAGCATGAAGAAGGCTTGATATATATTGTATATATGTTT
GTATATATATATGTACATATTGCAAGGATAAATAAGTGAAGGAAGTCCGA
GCATGTTAACTTCCAGCAGAAGTTATCACTGATCGTACTGCAAACTGACA
GATATTTTGAAGAATATTTGAAATAGCGGAGTAGCTTTTCACACTTTCAA
AAATCGGTTTTCGGAAGGTGGCTATCAACCATTTAAAGGCATGTAACCAA
GCATAGTTTAAAATAAGGTCCAGGGATTCCAATTAGATCATCTGAGATCG

protein sequence of jgi.p|Nanoce1779_2|593452

>mRNA_6006-protein ID=mRNA_6006-protein|Name=jgi.p|Nanoce1779_2|593452|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MQATAKPRPLVAASPQGCATCSVASSCAVGGCGAGASQRHSSSGPSSSSS
CSSSCSSAAASPSSSSRALPVSQSQQLACRDGVDAPCSNSSALKGRARVR
MLEQPKNNQEHRHKQEERDRKAVRRIRHGQKKKQRRAHLNLSAKILAGIA
GFWVLATTLLLTVPESQGFMTYLHWVRWPIFRDLTDLISFRLPHARNIRV
KTSDGLELGGWHVLPSHKIAVEASRLPPGSRAREDFFDLALARPNTRVVI
YFHGNAATRGQFNRVELVKALAATMEAHVIAIDYRGFGDSTGSPSEAGLG
LDARAVWTWVQEKVGGKEGEGGPANIYLYGHSLGSGVALGLAHYLSEEAE
AAAADDSDSSSSSSSSSSSKCSLPVVPTGLILDAPFTNLSMAALHHPSAL
PFRLLPFVKNALLHSMHERFPSLDYIQKLNEPILILHGRRDRMIPFFLGQ
ELYHAAQLARVRRRPDLLEDLWFSEFQEAGHNDVYAHGQWTNDVAAFMST
MELGLGERKE*

mRNA from alignment at scaffold_14:289394..291243+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6006 ID=mRNA_6006|Name=jgi.p|Nanoce1779_2|593452|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp|location=Sequence derived from alignment at scaffold_14:289394..291243+ (Nannochloropsis oceanica)
AAAATCTACAGAGTCAATGCAAGCCACGGCAAAGCCCCGGCCTTTGGTGG
CGGCTTCACCTCAAGGATGTGCCACTTGTAGTGTCGCCTCATCCTGTGCA
GTCGGAGGCTGCGGTGCTGGAGCCAGCCAGAGGCACAGTAGCTCAGGGCC
CTCGTCATCCTCATCCTGTTCCTCGTCCTGCTCCAGCGCGGCCGCTTCTC
CATCCTCCTCGTCTCGTGCACTCCCGGTGTCACAATCCCAGCAGCTCGCC
TGTCGTGATGGCGTAGACGCGCCTTGCTCCAACTCATCGGCGCTCAAAGG
CCGCGCTCGCGTGCGAATGCTTGAGCAGCCAAAAAATAATCAAGAACACC
GTCACAAACAAGAGGAACGAGACCGGAAAGCTGTCCGACGGATCAGGCAC
GGACAGAAGAAGAAACAACGACGCGCCCACCTCAATCTATCCGCCAAAAT
CTTAGCGGGAATAGCGGGGTTCTGGGTCCTGGCAACTACTCTCCTGCTCA
CCGTCCCTGAGTCCCAAGGGTTCATGACCTACCTCCACTGGGTCCGCTGG
CCCATCTTTCGTGACCTGACCGACTTGATTTCTTTTCGCTTGCCGCATGC
ACGAAATATCCGCGTAAAGACTTCGGACGGTCTTGAGTTGGGGGGATGGC
ATGTGTTGCCTTCTCACAAGATAGCAGTGGAGGCTAGTCGTCTGCCCCCG
GGAAGTCGTGCAAGGGAAGATTTTTTTGACCTGGCATTAGCCAGGCCAAA
CACACGGGTTGTGATTTATTTCCACGGGAATGCTGCGACACGAGGGCAAT
TTAATCGGGTGGAATTGGTGAAGGCATTGGCAGCCACGATGGAGGCGCAT
GTGATTGCAATTGATTACAGGGGGTTTGGAGACTCGACTGGTTCCCCCTC
CGAGGCAGGGTTAGGGTTGGATGCAAGAGCGGTGTGGACGTGGGTTCAGG
AGAAGGTGGGAGGGAAGGAGGGGGAGGGAGGGCCAGCAAATATTTATTTG
TACGGGCATTCCTTAGGTTCCGGCGTGGCATTGGGCTTGGCTCATTATTT
GAGCGAGGAGGCAGAAGCAGCAGCAGCTGACGACAGCGACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTAAATGCTCTCTTCCTGTCGTCCCCACG
GGCCTTATTCTGGATGCCCCTTTCACCAACCTGAGTATGGCAGCACTGCA
TCACCCCTCCGCCCTCCCCTTCCGTCTTTTGCCTTTCGTTAAGAACGCCT
TGCTTCATAGCATGCATGAGCGTTTCCCCTCCCTCGATTACATTCAAAAG
TTAAATGAACCCATCCTGATATTGCATGGGCGGAGGGATAGAATGATCCC
TTTTTTCTTAGGACAGGAGTTGTATCACGCTGCACAACTCGCAAGGGTGA
GACGTCGTCCGGACTTACTCGAGGATTTGTGGTTTTCTGAGTTTCAGGAG
GCGGGTCATAATGATGTGTATGCGCATGGACAGTGGACGAATGACGTGGC
GGCGTTCATGTCGACGATGGAATTGGGGTTGGGGGAGAGGAAGGAATAGA
TGGGTGGGTTACAGCATGAAGAAGGCTTGATATATATTGTATATATGTTT
GTATATATATATGTACATATTGCAAGGATAAATAAGTGAAGGAAGTCCGA
GCATGTTAACTTCCAGCAGAAGTTATCACTGATCGTACTGCAAACTGACA
GATATTTTGAAGAATATTTGAAATAGCGGAGTAGCTTTTCACACTTTCAA
AAATCGGTTTTCGGAAGGTGGCTATCAACCATTTAAAGGCATGTAACCAA
GCATAGTTTAAAATAAGGTCCAGGGATTCCAATTAGATCATCTGAGATCG

Coding sequence (CDS) from alignment at scaffold_14:289394..291243+

>mRNA_6006 ID=mRNA_6006|Name=jgi.p|Nanoce1779_2|593452|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_14:289394..291243+ (Nannochloropsis oceanica)
ATGCAAGCCACGGCAAAGCCCCGGCCTTTGGTGGCGGCTTCACCTCAAGG
ATGTGCCACTTGTAGTGTCGCCTCATCCTGTGCAGTCGGAGGCTGCGGTG
CTGGAGCCAGCCAGAGGCACAGTAGCTCAGGGCCCTCGTCATCCTCATCC
TGTTCCTCGTCCTGCTCCAGCGCGGCCGCTTCTCCATCCTCCTCGTCTCG
TGCACTCCCGGTGTCACAATCCCAGCAGCTCGCCTGTCGTGATGGCGTAG
ACGCGCCTTGCTCCAACTCATCGGCGCTCAAAGGCCGCGCTCGCGTGCGA
ATGCTTGAGCAGCCAAAAAATAATCAAGAACACCGTCACAAACAAGAGGA
ACGAGACCGGAAAGCTGTCCGACGGATCAGGCACGGACAGAAGAAGAAAC
AACGACGCGCCCACCTCAATCTATCCGCCAAAATCTTAGCGGGAATAGCG
GGGTTCTGGGTCCTGGCAACTACTCTCCTGCTCACCGTCCCTGAGTCCCA
AGGGTTCATGACCTACCTCCACTGGGTCCGCTGGCCCATCTTTCGTGACC
TGACCGACTTGATTTCTTTTCGCTTGCCGCATGCACGAAATATCCGCGTA
AAGACTTCGGACGGTCTTGAGTTGGGGGGATGGCATGTGTTGCCTTCTCA
CAAGATAGCAGTGGAGGCTAGTCGTCTGCCCCCGGGAAGTCGTGCAAGGG
AAGATTTTTTTGACCTGGCATTAGCCAGGCCAAACACACGGGTTGTGATT
TATTTCCACGGGAATGCTGCGACACGAGGGCAATTTAATCGGGTGGAATT
GGTGAAGGCATTGGCAGCCACGATGGAGGCGCATGTGATTGCAATTGATT
ACAGGGGGTTTGGAGACTCGACTGGTTCCCCCTCCGAGGCAGGGTTAGGG
TTGGATGCAAGAGCGGTGTGGACGTGGGTTCAGGAGAAGGTGGGAGGGAA
GGAGGGGGAGGGAGGGCCAGCAAATATTTATTTGTACGGGCATTCCTTAG
GTTCCGGCGTGGCATTGGGCTTGGCTCATTATTTGAGCGAGGAGGCAGAA
GCAGCAGCAGCTGACGACAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAAATGCTCTCTTCCTGTCGTCCCCACGGGCCTTATTCTGGATG
CCCCTTTCACCAACCTGAGTATGGCAGCACTGCATCACCCCTCCGCCCTC
CCCTTCCGTCTTTTGCCTTTCGTTAAGAACGCCTTGCTTCATAGCATGCA
TGAGCGTTTCCCCTCCCTCGATTACATTCAAAAGTTAAATGAACCCATCC
TGATATTGCATGGGCGGAGGGATAGAATGATCCCTTTTTTCTTAGGACAG
GAGTTGTATCACGCTGCACAACTCGCAAGGGTGAGACGTCGTCCGGACTT
ACTCGAGGATTTGTGGTTTTCTGAGTTTCAGGAGGCGGGTCATAATGATG
TGTATGCGCATGGACAGTGGACGAATGACGTGGCGGCGTTCATGTCGACG
ATGGAATTGGGGTTGGGGGAGAGGAAGGAATAG

Synonyms

Publications