jgi.p|Nanoce1779_2|593450, mRNA_6005 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593450
Unique Name	mRNA_6005
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1447
Alignment location	scaffold_14:287022..289209 -

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Properties


Property Name	Value
TranscriptId	593536
Track	FilteredModels2
ProteinId	593450

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:287022..289209 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593450	gene_6005	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593450	mRNA_6005-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6005	CDS_6005	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:287022..289209-
coding sequence from alignment at scaffold_14:287022..289209-

mRNA sequence

>mRNA_6005 ID=mRNA_6005|Name=jgi.p|Nanoce1779_2|593450|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp
AACGACAGGAAGCCGCCTACAACAAAGGTGGGGTTTCCTTCGTATAAGAC
TTAAATCGCCGACCTTGCCTCACTCCGTCCCGCCAGTGGCCTCAAGCTCG
AAACGAGCATACAACGATCAGTCAGTCTATAACAATCCACGACAACAACG
CAACGACCAGAAGCTCATCATCATGACAAGCACGCACGACAATGCCTTAG
AGGAGGAGGTTCAGCACTGGGTGGAAAGTGTGCTCAAGGAACCCTTTCCT
GAAGGGATGACCTTCGCTGAGGCCTTGAAGGATGGAACACGCTTGTGCCG
GCTGATCAACGAGGTGCAGCCGGGCAGCGTCAAGAAGGTCAACCAGTCCG
CCATGATGTTCAAGCAAATGGAGAATATCTCTCTCTTTCTGGCCGCCTGC
CGATCCCTGGGGGTACCAAGTTTTGACTGCTTCGAGACCAACGATTTGTT
CCAAGAAAAGAATATGCAAGGCGTCCTCCGGTGCCTGGATTCCCTCGGCC
GCACCGTGCAGACCAACTGCCCCTCCTTCCCCGGCCCCCATCTTGGCGCC
AAAATGGCCACAAAAAATGAGCGACATTTCGATCCTGCCCTGCTTAATGC
AAGCAAAGGTGCTGTGAACAAATTGAACATGGGATCCTCAGCTTTCATGG
AGAGGAAAGCGCCAGATATCTCAGCTAGCGTCACATTTGGGAATGAGTGC
GTGGGGGCAAGTACTACGGATGCACCCACTTTCTTGACGACAGGCAATTC
GACAGGTATGAGGTCCTCGCCTAAAAAGACGGAAGGGGGAAGGGAGGAGA
TTGCTCCGCCGGTGCCGGGAGCAGGGGCGGTGGAGGGAGGAAAATTGGCC
GAGTGATGATGACAAGAAGAAATGTGTTTGTTTGTTCGTACAATGGAAAT
ATGAGTAGAGGTGGTGAATGATAAATGACTAAGAATATACACGCCGGCGT
GTGTAACATACAGAGTAAAGTTCACCCTTTCGTAAGTGCAATTTAAGAAG
TGTTTTGATGCGACAGAAAGACGTGACGTCAGTGAGGCACAGGAAGTGGT
AAAAGAGAAGAAAGGCGCGGAAGTATGGGGAAGAGCAGAAAGTGAATAAT
AATGACTGAACGATTCAAGAGCTTGGACGGCTGCACTGTAGTCTGGGCTT
CGTATTCTTCTTACCGTATCCGAGTCACACCGAAACTGCTAAAACCCTTT
CCGTGTCATGTCTTATGCCGGTCTTCTCCTTCGTTTGTCTCTCGTGGTAA
CGGCCCCTATCGGCAGTTGAGTTGGCTCCTGGTTCGCGACTCGTCCCCAA
CCGTGCCAAATGACACAGGAAATTCAACTCCGCGGTCACAACAATCATGC
AGGAGGATCATCATATGTGATATGTTTTCACCAAGCGGTATGCATGCGTC
TAGGACTACCCTCGCTGCAAAATAATTACGTATTCATACCCTTCTTC

protein sequence of jgi.p|Nanoce1779_2|593450

>mRNA_6005-protein ID=mRNA_6005-protein|Name=jgi.p|Nanoce1779_2|593450|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MTSTHDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQP
GSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQG
VLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNK
LNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLTTGNSTGMRSSP
KKTEGGREEIAPPVPGAGAVEGGKLAE*

mRNA from alignment at scaffold_14:287022..289209-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6005 ID=mRNA_6005|Name=jgi.p|Nanoce1779_2|593450|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp|location=Sequence derived from alignment at scaffold_14:287022..289209- (Nannochloropsis oceanica)
AACGACAGGAAGCCGCCTACAACAAAGGTGGGGTTTCCTTCGTATAAGAC
TTAAATCGCCGACCTTGCCTCACTCCGTCCCGCCAGTGGCCTCAAGCTCG
AAACGAGCATACAACGATCAGTCAGTCTATAACAATCCACGACAACAACG
CAACGACCAGAAGCTCATCATCATGACAAGCACGCACGACAATGCCTTAG
GTGCGTATTGACAGGGGCTTGGGCTCAGAGTGAAGTTTGGGAAAGAGAAT
GGCGAGATCTGTAGGGGCAACGGAACGAAGCGGGGGGCTATGCGCATGGC
GCTACATGAGTATGCCAAGGAAGAATAGGCCCTCGATGCCTTGCCACATC
GTGCATCGCCTTGTGCCTTGTTCTCGGATAAAAATAGAGGAGGACGCTTC
AAACTCACTACGTAAGGGGAGATGCATAGGCGGGGGGAGGATGGATGATG
TTTATTTGTGATCCCCTGGAATAACCGTAGGGCCTTGATTTTCAGGGTTT
CCATTTTGTATGGTGAAGGCTATGAGTCTCTACTTTGATATTCTGCCTTC
TTGTACGGCCCTCGCCTACCCCGTCGACCCTCCGAGCTTTTCTGACTTTC
CCCCTTTTCTTTTTCTCGTCGAACAACAAATTACAGAGGAGGAGGTTCAG
CACTGGGTGGAAAGTGTGCTCAAGGAACCCTTTCCTGAAGGGATGACCTT
CGCTGAGGCCTTGAAGGATGGAACACGCTTGTGCCGGCTGATCAACGAGG
TGCAGGTGTGTGTCGCGTGTGGGTGGGTCAGTGGGTTGATCGGGTGATTT
GTGTAAACTTTTGAGAAGCGTATGATTCAAAAGTGCCCCAAAGATGTGTG
GTGGTGGGTGCATCCTAGCATCATTCAATCAATTTTGTTCCTCATCTGCA
CTTCTTTTCACTCCTTCTCTTTAGCCGGGCAGCGTCAAGAAGGTCAACCA
GTCCGCCATGATGTTCAAGCAAATGGAGAATATCTCTCTCTTTCTGGCCG
CCTGCCGATCCCTGGGGGTACCAAGTTTTGACTGCTTCGAGACCAACGAT
TTGTTCCAAGGTACTCCGTCCTTCTCTTTGTCTTCTTTCTTGTCTCATCC
TTGCGTCCCCGCCTCGCTCTCCTTGCTCTCGCTCTCTTTTGCATAACCAT
CGCTCACCTTTTAATTACTCTCCCGGCCTACCCTATTTTCGTCCAGAAAA
GAATATGCAAGGCGTCCTCCGGTGCCTGGATTCCCTCGGCCGCACCGTGC
AGACCAACTGCCCCTCCTTCCCCGGCCCCCATCTTGGCGCCAAAATGGCC
ACAAAAAATGAGCGACATTTCGATCCTGCCCTGCTTAATGCAAGCAAAGG
TGCTGTGAACAAATTGAACATGGGATCCTCAGCTTTCATGGAGAGGAAAG
CGCCAGATATCTCAGCTAGCGTCACATTTGGGAATGAGTGCGTGGGGGCA
AGTACTACGGATGCACCCACTTTCTTGACGACAGGCAATTCGACAGGTAT
GAGGTCCTCGCCTAAAAAGACGGAAGGGGGAAGGGAGGAGATTGCTCCGC
CGGTGCCGGGAGCAGGGGCGGTGGAGGGAGGAAAATTGGCCGAGTGATGA
TGACAAGAAGAAATGTGTTTGTTTGTTCGTACAATGGAAATATGAGTAGA
GGTGGTGAATGATAAATGACTAAGAATATACACGCCGGCGTGTGTAACAT
ACAGAGTAAAGTTCACCCTTTCGTAAGTGCAATTTAAGAAGTGTTTTGAT
GCGACAGAAAGACGTGACGTCAGTGAGGCACAGGAAGTGGTAAAAGAGAA
GAAAGGCGCGGAAGTATGGGGAAGAGCAGAAAGTGAATAATAATGACTGA
ACGATTCAAGAGCTTGGACGGCTGCACTGTAGTCTGGGCTTCGTATTCTT
CTTACCGTATCCGAGTCACACCGAAACTGCTAAAACCCTTTCCGTGTCAT
GTCTTATGCCGGTCTTCTCCTTCGTTTGTCTCTCGTGGTAACGGCCCCTA
TCGGCAGTTGAGTTGGCTCCTGGTTCGCGACTCGTCCCCAACCGTGCCAA
ATGACACAGGAAATTCAACTCCGCGGTCACAACAATCATGCAGGAGGATC
ATCATATGTGATATGTTTTCACCAAGCGGTATGCATGCGTCTAGGACTAC
CCTCGCTGCAAAATAATTACGTATTCATACCCTTCTTC

Coding sequence (CDS) from alignment at scaffold_14:287022..289209-

>mRNA_6005 ID=mRNA_6005|Name=jgi.p|Nanoce1779_2|593450|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_14:287022..289209- (Nannochloropsis oceanica)
AAAAGAATATGCAAGGCGTCCTCCGGTGCCTGGATTCCCTCGGCCGCACC
GTGCAGACCAACTGCCCCTCCTTCCCCGGCCCCCATCTTGGCGCCAAAAT
GGCCACAAAAAATGAGCGACATTTCGATCCTGCCCTGCTTAATGCAAGCA
AAGGTGCTGTGAACAAATTGAACATGGGATCCTCAGCTTTCATGGAGAGG
AAAGCGCCAGATATCTCAGCTAGCGTCACATTTGGGAATGAGTGCGTGGG
GGCAAGTACTACGGATGCACCCACTTTCTTGACGACAGGCAATTCGACAG
GTATGAGGTCCTCGCCTAAAAAGACGGAAGGGGGAAGGGAGGAGATTGCT
CCGCCGGTGCCGGGAGCAGGGGCGGTGGAGGGAGGAAAATTGGCCGAGTG
ACCGGGCAGCGTCAAGAAGGTCAACCAGTCCGCCATGATGTTCAAGCAAA
TGGAGAATATCTCTCTCTTTCTGGCCGCCTGCCGATCCCTGGGGGTACCA
AGTTTTGACTGCTTCGAGACCAACGATTTGTTCCAAGAGGAGGAGGTTCA
GCACTGGGTGGAAAGTGTGCTCAAGGAACCCTTTCCTGAAGGGATGACCT
TCGCTGAGGCCTTGAAGGATGGAACACGCTTGTGCCGGCTGATCAACGAG
GTGCAGATGACAAGCACGCACGACAATGCCTTAGAAAAGAATATGCAAGG
CGTCCTCCGGTGCCTGGATTCCCTCGGCCGCACCGTGCAGACCAACTGCC
CCTCCTTCCCCGGCCCCCATCTTGGCGCCAAAATGGCCACAAAAAATGAG
CGACATTTCGATCCTGCCCTGCTTAATGCAAGCAAAGGTGCTGTGAACAA
ATTGAACATGGGATCCTCAGCTTTCATGGAGAGGAAAGCGCCAGATATCT
CAGCTAGCGTCACATTTGGGAATGAGTGCGTGGGGGCAAGTACTACGGAT
GCACCCACTTTCTTGACGACAGGCAATTCGACAGGTATGAGGTCCTCGCC
TAAAAAGACGGAAGGGGGAAGGGAGGAGATTGCTCCGCCGGTGCCGGGAG
CAGGGGCGGTGGAGGGAGGAAAATTGGCCGAGTGACCGGGCAGCGTCAAG
AAGGTCAACCAGTCCGCCATGATGTTCAAGCAAATGGAGAATATCTCTCT
CTTTCTGGCCGCCTGCCGATCCCTGGGGGTACCAAGTTTTGACTGCTTCG
AGACCAACGATTTGTTCCAAGAGGAGGAGGTTCAGCACTGGGTGGAAAGT
GTGCTCAAGGAACCCTTTCCTGAAGGGATGACCTTCGCTGAGGCCTTGAA
GGATGGAACACGCTTGTGCCGGCTGATCAACGAGGTGCAGATGACAAGCA
CGCACGACAATGCCTTAGAAAAGAATATGCAAGGCGTCCTCCGGTGCCTG
GATTCCCTCGGCCGCACCGTGCAGACCAACTGCCCCTCCTTCCCCGGCCC
CCATCTTGGCGCCAAAATGGCCACAAAAAATGAGCGACATTTCGATCCTG
CCCTGCTTAATGCAAGCAAAGGTGCTGTGAACAAATTGAACATGGGATCC
TCAGCTTTCATGGAGAGGAAAGCGCCAGATATCTCAGCTAGCGTCACATT
TGGGAATGAGTGCGTGGGGGCAAGTACTACGGATGCACCCACTTTCTTGA
CGACAGGCAATTCGACAGGTATGAGGTCCTCGCCTAAAAAGACGGAAGGG
GGAAGGGAGGAGATTGCTCCGCCGGTGCCGGGAGCAGGGGCGGTGGAGGG
AGGAAAATTGGCCGAGTGACCGGGCAGCGTCAAGAAGGTCAACCAGTCCG
CCATGATGTTCAAGCAAATGGAGAATATCTCTCTCTTTCTGGCCGCCTGC
CGATCCCTGGGGGTACCAAGTTTTGACTGCTTCGAGACCAACGATTTGTT
CCAAGAGGAGGAGGTTCAGCACTGGGTGGAAAGTGTGCTCAAGGAACCCT
TTCCTGAAGGGATGACCTTCGCTGAGGCCTTGAAGGATGGAACACGCTTG
TGCCGGCTGATCAACGAGGTGCAGATGACAAGCACGCACGACAATGCCTT
AGAAAAGAATATGCAAGGCGTCCTCCGGTGCCTGGATTCCCTCGGCCGCA
CCGTGCAGACCAACTGCCCCTCCTTCCCCGGCCCCCATCTTGGCGCCAAA
ATGGCCACAAAAAATGAGCGACATTTCGATCCTGCCCTGCTTAATGCAAG
CAAAGGTGCTGTGAACAAATTGAACATGGGATCCTCAGCTTTCATGGAGA
GGAAAGCGCCAGATATCTCAGCTAGCGTCACATTTGGGAATGAGTGCGTG
GGGGCAAGTACTACGGATGCACCCACTTTCTTGACGACAGGCAATTCGAC
AGGTATGAGGTCCTCGCCTAAAAAGACGGAAGGGGGAAGGGAGGAGATTG
CTCCGCCGGTGCCGGGAGCAGGGGCGGTGGAGGGAGGAAAATTGGCCGAG
TGACCGGGCAGCGTCAAGAAGGTCAACCAGTCCGCCATGATGTTCAAGCA
AATGGAGAATATCTCTCTCTTTCTGGCCGCCTGCCGATCCCTGGGGGTAC
CAAGTTTTGACTGCTTCGAGACCAACGATTTGTTCCAAGAGGAGGAGGTT
CAGCACTGGGTGGAAAGTGTGCTCAAGGAACCCTTTCCTGAAGGGATGAC
CTTCGCTGAGGCCTTGAAGGATGGAACACGCTTGTGCCGGCTGATCAACG
AGGTGCAGATGACAAGCACGCACGACAATGCCTTAG

Synonyms

Publications