jgi.p|Nanoce1779_2|593445, mRNA_6003 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593445
Unique Name	mRNA_6003
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3447
Alignment location	scaffold_14:282089..286329 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593531
Track	FilteredModels2
ProteinId	593445

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:282089..286329 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593445	gene_6003	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593445	mRNA_6003-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6003	CDS_6003	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:282089..286329+
coding sequence from alignment at scaffold_14:282089..286329+

mRNA sequence

>mRNA_6003 ID=mRNA_6003|Name=jgi.p|Nanoce1779_2|593445|organism=Nannochloropsis oceanica|type=mRNA|length=3447bp
ACAGTCACACACATAACCATGAAGGTCGCCGCCGTCCTCCTTGCTCTCTG
CGCCACAACCCAGGCTTTCGTGCCTCAGTTCGCCCGGCCCTCCCCTCGGG
CAGGCCCCTTGGCCGCCGGTCCCCAGGCCTCGGACGGCTCCATCCGTGTC
AAGAGTGTGAAGGCCAAGGACGAATGGGTGCCCCTCCTGAAGGCCACCGA
CATTGCCCCCGGTGACATCATCCCCGTCGAGTCCAAGGGCCTCCAGCTCC
TCCTTGTGGCCGACTACGACGGCTCTGTCTACTGCGTTGCCAATGTCTGC
CCCCACCTCGGCACGCCCCTCGACCAGGGCTCCCTGGGCGATGGCACCAT
CGTCTGCCCCCTCCACAAGTCCGCTTTCAGCCTCGAGTCCGGTGAACTCG
TCGGAGACTGGTGCCCTTTCCCCCCCGTCCTTGGCCCCCTTGTCCTCGGC
AAGCTCCAGCCCCCCCGCGACTTGGCTGTGTTCCAGGTCCGTTCCCGTGG
CTCGGACATTGAGGCATTGCTCAACATTAATCTGAAGGCCGATTTCGAGA
GCAAGTACTGGGCGGGTCTCCTTGACGCGCAGGGCAAGGCCACCGGTGAC
TACTATTAGAGGAAGGAAGAAGAATACGAAGATGGGTGATGATGATGATA
ATGGTTGGTAGACGGTTTCTCTCTCTTTCCCCTTCTCTCTTTCTTTTTTT
TAAGTGAAAAATAAAAACCCGGAAACGGAGACAACGACAGCAATATCATG
GCGACGTCGACGAAGGGGTAGGAAAAATGGAGTGGAGAGAGGAAGGAAAA
AGGCCAACCCAGGGTGCGGTGAGAGGTAGGGAGATAGAGAGGAAGGGGAA
AGTCACGCAAGCAATCATATCATAGGTGTCTTTCCTCCCTCCTGTCCTCT
ATACACCGGGCATGCGCGAGTTAGAGGGACAGAGAAGAAAGGGAGCACGT
CGTATAGAAGGGGTTGGTAGTGGTGGACCATGATATCAGGAACGAAGGAA
ATCTCAAGAAAAGACGGATGGAGGAGGGTTGTGAATTTTAAGGCGCTTTT
GTGGTTTTGCTTTTCTCATTGTCTCGTTTGGCCATGTTAACTCACTTCCT
CTTGTGTGTGAGAGGGGGGACAAGCGCCTGTTATGGGTCGAAAGCCACGT
TCATGTGCTCGGCAAAGGAAGAAGCATTCCCAAAGGTCGATCACATGAGG
GACAGATTGTGGTGCTTTGTTTCTTTTATTTTTCATTCTCTCGATTTCCC
CTCTACAGGACATGCTGGCATAGATTGAGCACCGACCACTATCAAGCAGT
CGTTCACGAGGCGACTGCTTAAAAACGGATCGTAACATTCGTCTTTTGCT
TGTCGCCCGCGTGGACACCCGCCGGCCTGTCTGGTGCGGATGCGAATGCC
GGTGCAGTGGCAGATGCTTTTGTCATGGATTTCCACCTTCACCCGCCTTT
TTCAATCAAATGTACAGTCATTAGGCTGAGCTACGCTGCAGTCTACTTAC
TCACTTCTTGCCTTCCCCGCTCCAGATTTAGATCGACTGACGCATTCAGC
TTTTCTCGTCGTGTAGTGAATCATCGCCATGGCCAAAATATATAAACCCC
TTCCCCACCCCCTGTTTCCCTTCTTCCCTCCCTCTCATCAGACGCTGCTC
CCCGTGGCCAAATAAACAAAAGTCTGGATGATCGTCCAGCTCCATGCAAC
CACCAAAAATGTCACAAATCCCGCCCCCCCCCACCAGTTCTTCTTATCGC
ATTTTTGCATCGCCTTCTGGTGCGCCACGTCCCTGGGCAACAAAAACAAC
AGGCACAATCCCAGGGGCTGCAATAAACTCGTCAACAAACTGAGTTTCCA
CAGGCCCGACCATTCCCCCGCCGACAGGCTTTCATTCGACACATTCCATA
TGCCCGTCATCAAGGTGCCCATGTCCGAGCCAATCGCACCTGCCACATTC
GAAAGGGTAGTAAGCATCGCGTAGCTCGTCCCCTCTGCGCCGGCGGGGCA
CAAACCGATGTACATGGTCACGGCAGGCAGGAACTGTAAGGCTTGAATAA
AGCTGCCGGCCGCGTCATCTCCCAAGGCAAACACCAGGTCGGGGATCCCC
CACCTGACATTGATGCGGAAGATGAGGCAGAGCTGAAGGACAGAGAAGAA
GACAGTGAGGGAGGTGGAGATGATGTAGACCCAGCGCCAGGAGTAGGGCA
TGAGGAAGGCACGGTAGAAAGTGATACCTGGGAGGGAAAAGAAAACATGT
GAAAAACGCAAGAAAGAAACATCAGGATACAGAAAAGCAATCTTCGTCTG
GCGCCACCAAAGGTCTCCTCTTCTCCTCCCTCTCTCCCTTCCCTCCCATA
TCACCTAACCACGAGAAGACTGTTGCGATAATAAACATGATACCCAGCAT
CCAGGGCGTAAACTTCAACCCCAAAATGAGGAAGTTGCTCCATGCACCGT
TCGGAATTTGCATCATATTGTACACCGCAATAAATGACATGGGCACAAAA
ATCGTCTTCCTCTGCACCATCTCCCATATATCCTCCAGCTGCTCTCTCAG
GCTCCTGGCGGCCAACACATGGTTCGGATCTGACAGCTGCCAGGTAACCG
GGCCCACCAATACAAGCGCGCTCAACCCGTTGAGCAAGTAAATGTTGCTG
ATGCTTAACCCCCACCCCCACTCGGCCTCGTTGTACAAAATGGTGCCCAG
CGTGGCACCCACGACATTCCCGATGTACCTCGCCATATAGCCCACTGCCT
GCATAGTCCCTACTTTCCCCTCCACTTCTAGCTGAGACCGCTCGACTATG
ATCGCGTCACACATGACGTCTGCGAGCATGTATCCACACACGGAGAAGAA
GCCCATGCCGATCAAGGCATTAAGACTTGGCTCGCCCATGGAGGCCAGAG
CGAGATTCATGCCCACGAAAATAGACCAGCCGATGATAAAATACGGCTTG
CGGCGTTTCCCGCGAATGGGGACACAGTCTGACAAGAGTCCATAGAGTAC
TTTGAATGACCAAGGCAACGCTAGCATCGTTCCAGTTATATTAAGCTGGG
CCGGGCTGATGTTCAACTTTCCGACGGCGTAGGCCGTAAGAGGCGTGCCC
GTAAAGGTCATTGCGAAACCAATCGTCCAATAACTCATCAACAACGCCAG
GTTCTGCGAACTCCACATGCTTGTCAAGCGCAACCTCATCGCCGGATCCA
TGCCATCACCTGGCCTCCCTCCCTCAATCTCCAACTTCCCCACCCCAAGT
CCTCCTCCTGCTTTCATCGTCGAGGAAGGGGTGCGAACCCTACCCTTCCC
TCCTGGGGTTTCTCCCTTCATCAAGGTCGTAATCTCTCCGTACTCTTCGT
CTTTGCTCGAGGAGGAGGAGGAAGAAGAAGAGGAGGAATCGAGTGTCGCC
CCGCTGCCAATGGTAGAGACGGCCGCCGCAGCCAAGGCATCGTATTC

protein sequence of jgi.p|Nanoce1779_2|593445

>mRNA_6003-protein ID=mRNA_6003-protein|Name=jgi.p|Nanoce1779_2|593445|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MKVAAVLLALCATTQAFVPQFARPSPRAGPLAAGPQASDGSIRVKSVKAK
DEWVPLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANVCPHLGTP
LDQGSLGDGTIVCPLHKSAFSLESGELVGDWCPFPPVLGPLVLGKLQPPR
DLAVFQVRSRGSDIEALLNINLKADFESKYWAGLLDAQGKATGDYY*

mRNA from alignment at scaffold_14:282089..286329+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6003 ID=mRNA_6003|Name=jgi.p|Nanoce1779_2|593445|organism=Nannochloropsis oceanica|type=mRNA|length=4241bp|location=Sequence derived from alignment at scaffold_14:282089..286329+ (Nannochloropsis oceanica)
ACAGTCACACACATAACCATGAAGGTCGCCGCCGTCCTCCTTGCTCTCTG
CGCCACAACCCAGGCTTTCGGTAAGTCTGAGTTGGTATGAGGAAGGGCAG
GGGGAGGAACGGGAATGAGAATACTCTTAGTAGCAGCTCATTTTACCTTA
GAGTTGGCTATGTTATGTGGGGGGTTGTTTTTGCGTTGGGTAGGGCGTCC
TTTTCGGTATTCAAGAGTGATGTGGATGGGAAGGGGGGGAGCCACACAAT
GAGCCAGTCAAAGCATCCGCATGTGTCGGATGGTAGGGAAATTGTGTGGA
TGTATTTTGTATACACGCCCATTTTGGGCGGAGATAGATGCCCGGGTGGA
TGGGGAGACGGACCTTGGAATGCGAGGAACTTGGATGGCGAGGATCAGGG
CAATCATACCATTTTGCACTGTATTGCCGCATTCGATCTGGAGAAAACTG
ACCCGCCCTCATCAACCCCACCCCAACCCCAAAAACAGTGCCTCAGTTCG
CCCGGCCCTCCCCTCGGGCAGGCCCCTTGGCCGCCGGTCCCCAGGCCTCG
GACGGCTCCATCCGTGTCAAGAGTGTGAAGGCCAAGGACGAATGGGTGCC
CCTCCTGAAGGCCACCGACATTGCCCCCGGTGACATCATCCCCGTCGAGT
CCAAGGGCCTCCAGCTCCTCCTTGTGGCCGACTACGACGGCTCTGTCTAC
TGCGTTGCCAATGTCTGCCCCCACCTCGGCACGCCCCTCGACCAGGGCTC
CCTGGGCGATGGCACCATCGTCTGCCCCCTCCACAAGTCCGCTTTCAGCC
TCGAGTCCGGTGAACTCGTCGGAGACTGGTGCCCTTTCCCCCCCGTCCTT
GGCCCCCTTGTCCTCGGCAAGCTCCAGCCCCCCCGCGACTTGGCTGTGTT
CCAGGTCCGTTCCCGTGGCTCGGACATTGAGGCATTGCTCAACATTAATC
TGAAGGCCGATTTCGAGAGCAAGTACTGGGCGGGTCTCCTTGACGCGCAG
GGCAAGGCCACCGGTGACTACTATTAGAGGAAGGAAGAAGAATACGAAGA
TGGGTGATGATGATGATAATGGTTGGTAGACGGTTTCTCTCTCTTTCCCC
TTCTCTCTTTCTTTTTTTTAAGTGAAAAATAAAAACCCGGAAACGGAGAC
AACGACAGCAATATCATGGCGACGTCGACGAAGGGGTAGGAAAAATGGAG
TGGAGAGAGGAAGGAAAAAGGCCAACCCAGGGTGCGGTGAGAGGTAGGGA
GATAGAGAGGAAGGGGAAAGTCACGCAAGCAATCATATCATAGGTGTCTT
TCCTCCCTCCTGTCCTCTATACACCGGGCATGCGCGAGTTAGAGGGACAG
AGAAGAAAGGGAGCACGTCGTATAGAAGGGGTTGGTAGTGGTGGACCATG
ATATCAGGAACGAAGGAAATCTCAAGAAAAGACGGATGGAGGAGGGTTGT
GAATTTTAAGGCGCTTTTGTGGTTTTGCTTTTCTCATTGTCTCGTTTGGC
CATGTTAACTCACTTCCTCTTGTGTGTGAGAGGGGGGACAAGCGCCTGTT
ATGGGTCGAAAGCCACGTTCATGTGCTCGGCAAAGGAAGAAGCATTCCCA
AAGGTCGATCACATGAGGGACAGATTGTGGTGCTTTGTTTCTTTTATTTT
TCATTCTCTCGATTTCCCCTCTACAGGACATGCTGGCATAGATTGAGCAC
CGACCACTATCAAGCAGTCGTTCACGAGGCGACTGCTTAAAAACGGATCG
TAACATTCGTCTTTTGCTTGTCGCCCGCGTGGACACCCGCCGGCCTGTCT
GGTGCGGATGCGAATGCCGGTGCAGTGGCAGATGCTTTTGTCATGGATTT
CCACCTTCACCCGCCTTTTTCAATCAAATGTACAGTCATTAGGCTGAGCT
ACGCTGCAGTCTACTTACTCACTTCTTGCCTTCCCCGCTCCAGATTTAGA
TCGACTGACGCATTCAGCTTTTCTCGTCGTGTAGTGAATCATCGCCATGG
CCAAAATATATAAACCCCTTCCCCACCCCCTGTTTCCCTTCTTCCCTCCC
TCTCATCAGACGCTGCTCCCCGTGGCCAAATAAACAAAAGTCTGGATGAT
CGTCCAGCTCCATGCAACCACCAAAAATGTCACAAATCCCGCCCCCCCCC
ACCAGTTCTTCTTATCGCATTTTTGCATCGCCTTCTGGTGCGCCACGTCC
CTGGGCAACAAAAACAACAGGCACAATCCCAGGGGCTGCAATAAACTCGT
CAACAAACTGAGTTTCCACAGGCCCGACCATTCCCCCGCCGACAGGCTTT
CATTCGACACATTCCATATGCCCGTCATCAAGGTGCCCATGTCCGAGCCA
ATCGCACCTGCCACATTCGAAAGGGTAGTAAGCATCGCGTAGCTCGTCCC
CTCTGCGCCGGCGGGGCACAAACCGATGTACATGGTCACGGCAGGCAGGA
ACTGTAAGGCTTGAATAAAGCTGCCGGCCGCGTCATCTCCCAAGGCAAAC
ACCAGGTCGGGGATCCCCCACCTGACATTGATGCGGAAGATGAGGCAGAG
CTGAAGGACAGAGAAGAAGACAGTGAGGGAGGTGGAGATGATGTAGACCC
AGCGCCAGGAGTAGGGCATGAGGAAGGCACGGTAGAAAGTGATACCTGGG
AGGGAAAAGAAAACATGTGAAAAACGCAAGAAAGAAACATCAGGATACAG
AAAAGCAATCTTCGTCTGGCGCCACCAAAGGTCTCCTCTTCTCCTCCCTC
TCTCCCTTCCCTCCCATATCACCTAACCACGAGAAGACTGTTGCGATAAT
AAACATGATACCCAGCATCCAGGGCGTAAACTTCAACCCCAAAATGAGGA
AGTTGCTCCATGCACCGTTCGGAATTTGCATCATATTGTACACCTATGGG
AAGAAAGGGAGGGAGAGAAGGAGGAAAGGACGAAGGGGCATTAAGAAGGT
GGGCCGTGTCAGGGGCAAGAACGAAAGAGGGAAGGATAGAAGGGAATGAG
GGAGGGAGGGAAATAGGGTACATACCGCAATAAATGACATGGGCACAAAA
ATCGTCTTCCTCTGCACCATCTCCCATATATCCTCCAGCTGCTCTCTCAG
GCTCCTGGCGGCCAACACATGGTTCGGATCTGACAGCTGCCAGGTAACCG
GGCCCACCAATACAAGCGCGCTCAACCCGTTGAGCAAGTAAATGTTGCTG
ATGCTTAACCCCCACCCCCACTCGGCCTCGTTGTACAAAATGGTGCCCAG
CGTGGCACCCACGACATTCCCGATGTACCTCGCCATATAGCCCACTGCCT
GCATAGTCCCTACTTTCCCCTCCACTTCTAGCTGAGACCGCTCGACTATG
ATCGCGTCACACATGACGTCTGCGAGCATGTATCCACACACGGAGAAGAA
GCCCATGCCGATCAAGGCATTAAGACTTGGCTCGCCCATGGAGGCCAGAG
CGAGATTCATGCCTGAAGGGAGGGAGAGAAGGAGTGATGGAAGAAAGGGA
GGGAGGAATATAATATGAGTGGCCGCAATCTGAGTCGTAATGTGCCACAT
TTCCCCCCTATCTTCTTTGCCTTTCTTCCCTGTCCCTCACTCACCCACGA
AAATAGACCAGCCGATGATAAAATACGGCTTGCGGCGTTTCCCGCGAATG
GGGACACAGTCTGACAAGAGTCCATAGAGTACTTTGAATGACCAAGGCAA
CGCTAGCATCGTTCCAGTTATATTAAGCTGGGCCGGGCTGATGTTCAACT
TTCCGACGGCGTAGGCCGTAAGAGGCGTGCCCGTAAAGGTCATTGCGAAA
CTAGAGGTTGGAGGAAGAAAGAGAATGAGTGCGGGTGGCACGAACACGAT
TGATCCCTCTTTCTGCCCCTCCTTGTTCCCTTCCTCCCTCGCCTTCTCCC
ATCCACTCATACCCAATCGTCCAATAACTCATCAACAACGCCAGGTTCTG
CGAACTCCACATGCTTGTCAAGCGCAACCTCATCGCCGGATCCATGCCAT
CACCTGGCCTCCCTCCCTCAATCTCCAACTTCCCCACCCCAAGTCCTCCT
CCTGCTTTCATCGTCGAGGAAGGGGTGCGAACCCTACCCTTCCCTCCTGG
GGTTTCTCCCTTCATCAAGGTCGTAATCTCTCCGTACTCTTCGTCTTTGC
TCGAGGAGGAGGAGGAAGAAGAAGAGGAGGAATCGAGTGTCGCCCCGCTG
CCAATGGTAGAGACGGCCGCCGCAGCCAAGGCATCGTATTC

Coding sequence (CDS) from alignment at scaffold_14:282089..286329+

>mRNA_6003 ID=mRNA_6003|Name=jgi.p|Nanoce1779_2|593445|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_14:282089..286329+ (Nannochloropsis oceanica)
ATGAAGGTCGCCGCCGTCCTCCTTGCTCTCTGCGCCACAACCCAGGCTTT
CGTGCCTCAGTTCGCCCGGCCCTCCCCTCGGGCAGGCCCCTTGGCCGCCG
GTCCCCAGGCCTCGGACGGCTCCATCCGTGTCAAGAGTGTGAAGGCCAAG
GACGAATGGGTGCCCCTCCTGAAGGCCACCGACATTGCCCCCGGTGACAT
CATCCCCGTCGAGTCCAAGGGCCTCCAGCTCCTCCTTGTGGCCGACTACG
ACGGCTCTGTCTACTGCGTTGCCAATGTCTGCCCCCACCTCGGCACGCCC
CTCGACCAGGGCTCCCTGGGCGATGGCACCATCGTCTGCCCCCTCCACAA
GTCCGCTTTCAGCCTCGAGTCCGGTGAACTCGTCGGAGACTGGTGCCCTT
TCCCCCCCGTCCTTGGCCCCCTTGTCCTCGGCAAGCTCCAGCCCCCCCGC
GACTTGGCTGTGTTCCAGGTCCGTTCCCGTGGCTCGGACATTGAGGCATT
GCTCAACATTAATCTGAAGGCCGATTTCGAGAGCAAGTACTGGGCGGGTC
TCCTTGACGCGCAGGGCAAGGCCACCGGTGACTACTATTAGATGAAGGTC
GCCGCCGTCCTCCTTGCTCTCTGCGCCACAACCCAGGCTTTCGTGCCTCA
GTTCGCCCGGCCCTCCCCTCGGGCAGGCCCCTTGGCCGCCGGTCCCCAGG
CCTCGGACGGCTCCATCCGTGTCAAGAGTGTGAAGGCCAAGGACGAATGG
GTGCCCCTCCTGAAGGCCACCGACATTGCCCCCGGTGACATCATCCCCGT
CGAGTCCAAGGGCCTCCAGCTCCTCCTTGTGGCCGACTACGACGGCTCTG
TCTACTGCGTTGCCAATGTCTGCCCCCACCTCGGCACGCCCCTCGACCAG
GGCTCCCTGGGCGATGGCACCATCGTCTGCCCCCTCCACAAGTCCGCTTT
CAGCCTCGAGTCCGGTGAACTCGTCGGAGACTGGTGCCCTTTCCCCCCCG
TCCTTGGCCCCCTTGTCCTCGGCAAGCTCCAGCCCCCCCGCGACTTGGCT
GTGTTCCAGGTCCGTTCCCGTGGCTCGGACATTGAGGCATTGCTCAACAT
TAATCTGAAGGCCGATTTCGAGAGCAAGTACTGGGCGGGTCTCCTTGACG
CGCAGGGCAAGGCCACCGGTGACTACTATTAG

Synonyms

Publications