jgi.p|Nanoce1779_2|593443, mRNA_6002 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593443
Unique NamemRNA_6002
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1216
Alignment locationscaffold_14:279903..281301 -

Link to JBrowse

Properties
Property NameValue
TranscriptId593529
TrackFilteredModels2
ProteinId593443
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:279903..281301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593443gene_6002Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593443mRNA_6002-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6002CDS_6002Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6002 ID=mRNA_6002|Name=jgi.p|Nanoce1779_2|593443|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp
ACAGGGTGGCTTCTTATCCACCATGGCGGCCGACAGCGACGAGAACGAGG
CCCCATGCAGCACCATTACCCCCAGCAGCACCAGTTGCTCAAATGACGAA
AACAATCCTCCCCCAGCCCTGACCCTCGCGCAGCAGCAACAGGCCGACGA
CGACGCCAAGGGCTTCCCCAAGAATCGCTTCTCGCACGGCGTCACCAAGC
TCTGGCACATCCCACCTTCCCTCAAGACGGGCAAGCCCGTCAAGCTGGGC
ATTGATGAGGCAGGCCGTGGTCCTGTCATGGGACCGATGGTGTATGCGGC
GGCATTTTGGAAGGTGGAAGAGGACGCCGCCATGATTGCCATGGGCTTCG
ACGACTCCAAGGCTCTGGACGAAAAAACCCGTGACGGGCTATTTCAACGC
ATGCTGCGGACGCATGCTCATCTTGGGTGGGTTATCCATTCCATTCCTGC
CGCAGAATTGGCAGGCAAGATGTTAATGAAAGAGCCGACGAGCTTGAATA
AAATAAGTCACGATTCCGCAGCAGACATGATTTCTCTCGTGTTGGCGGAA
GGTGTGTGTGTGACGGAGGTATTTGTGGACACAGTGGGCGACCCAGAGAT
GTACCAGAAGAAGTTGGAAGGACTGTTTGCGCACCATTCCCCTCGTATCA
CGTTTGTGGTGGCGAAGAAAGCCGATAGCTTGTACAAGACCGTGAGCGCG
GCCTCGATTGCTGCCAAGGTGACGAGGGACAGGGCCATCAGTGGGTGGGT
GTGGGAGGAGGGCTTTCAAGGCAAAGGTCAAGTGCCGTTGACGAACTTCG
GGAGCGGCTACCCGGGGGACGCCCGTTGCTCGGAATGGCTGAAAGGCAAC
AGTGACAGCGTGTTTGGCTTTCCTAGCCTGGTGCGCTTCAGCTGGTCCAC
GGCCCGGGATCTGATGGAGAAGGAGTGCGTAAAGGTAGAGTGGGAGGAGG
ACGAGGAGGATGGGGGGGGGCTACCAGCGGGAACGGCGTCGATTGAGGCG
TTTATTCGACCCAAGCCGGGGGCACCCAAAAAGGCACGGAAGAGAGCCAA
GTATTTTCAAACGCGGGGCGTGGAGACAGTGGGGGACTTCTAATCAGCTA
TCACAGGATAGAAGGTCGATGATGATAATGATAACAATAGAGCTATCAGA
TACTGGAGCAGATGCATGGGGCAAAACTGGTGTGTCATATTGAAGGTCGT
TTGCATCATATCTTAT
back to top

protein sequence of jgi.p|Nanoce1779_2|593443

>mRNA_6002-protein ID=mRNA_6002-protein|Name=jgi.p|Nanoce1779_2|593443|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MAADSDENEAPCSTITPSSTSCSNDENNPPPALTLAQQQQADDDAKGFPK
NRFSHGVTKLWHIPPSLKTGKPVKLGIDEAGRGPVMGPMVYAAAFWKVEE
DAAMIAMGFDDSKALDEKTRDGLFQRMLRTHAHLGWVIHSIPAAELAGKM
LMKEPTSLNKISHDSAADMISLVLAEGVCVTEVFVDTVGDPEMYQKKLEG
LFAHHSPRITFVVAKKADSLYKTVSAASIAAKVTRDRAISGWVWEEGFQG
KGQVPLTNFGSGYPGDARCSEWLKGNSDSVFGFPSLVRFSWSTARDLMEK
ECVKVEWEEDEEDGGGLPAGTASIEAFIRPKPGAPKKARKRAKYFQTRGV
ETVGDF*
back to top

mRNA from alignment at scaffold_14:279903..281301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6002 ID=mRNA_6002|Name=jgi.p|Nanoce1779_2|593443|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp|location=Sequence derived from alignment at scaffold_14:279903..281301- (Nannochloropsis oceanica)
ACAGGGTGGCTTCTTATCCACCATGGCGGCCGACAGCGACGAGAACGAGG
CCCCATGCAGCACCATTACCCCCAGCAGCACCAGTTGCTCAAATGACGAA
AACAATCCTCCCCCAGCCCTGACCCTCGCGCAGCAGCAACAGGCCGACGA
CGACGCCAAGGGCTTCCCCAAGAATCGCTTCTCGCACGGCGTCACCAAGC
TCTGGCACATCCCACCTTCCCTCAAGACGGGCAAGCCCGTCAAGCTGGGC
ATTGATGAGGCAGGCCGTGGTCCTGTCATGGGACCGATGGTGTATGCGGC
GGCATTTTGGAAGGTGGAAGAGGTATGTCTTAATAATAGGGAGGAGGGGA
GGTTGAGGGAAGACCTGTGCATCAAATGAAACAAACGACGAAAGAAGAAT
GCCTGTGTCTGTGGTTGGGAATGAAGGATATTGGATTTAAATGTTTGAGA
GGGCGAGAAACGGTATTTTACCTCCCAACGCCTTGATTTCCTCCCTATCC
TGCAGGACGCCGCCATGATTGCCATGGGCTTCGACGACTCCAAGGCTCTG
GACGAAAAAACCCGTGACGGGCTATTTCAACGCATGCTGCGGACGCATGC
TCATCTTGGGTGGGTTATCCATTCCATTCCTGCCGCAGAATTGGCAGGCA
AGATGTTAATGAAAGAGCCGACGAGCTTGAATAAAATAAGTCACGATTCC
GCAGCAGACATGATTTCTCTCGTGTTGGCGGAAGGTGTGTGTGTGACGGA
GGTATTTGTGGACACAGTGGGCGACCCAGAGATGTACCAGAAGAAGTTGG
AAGGACTGTTTGCGCACCATTCCCCTCGTATCACGTTTGTGGTGGCGAAG
AAAGCCGATAGCTTGTACAAGACCGTGAGCGCGGCCTCGATTGCTGCCAA
GGTGACGAGGGACAGGGCCATCAGTGGGTGGGTGTGGGAGGAGGGCTTTC
AAGGCAAAGGTCAAGTGCCGTTGACGAACTTCGGGAGCGGCTACCCGGGG
GACGCCCGTTGCTCGGAATGGCTGAAAGGCAACAGTGACAGCGTGTTTGG
CTTTCCTAGCCTGGTGCGCTTCAGCTGGTCCACGGCCCGGGATCTGATGG
AGAAGGAGTGCGTAAAGGTAGAGTGGGAGGAGGACGAGGAGGATGGGGGG
GGGCTACCAGCGGGAACGGCGTCGATTGAGGCGTTTATTCGACCCAAGCC
GGGGGCACCCAAAAAGGCACGGAAGAGAGCCAAGTATTTTCAAACGCGGG
GCGTGGAGACAGTGGGGGACTTCTAATCAGCTATCACAGGATAGAAGGTC
GATGATGATAATGATAACAATAGAGCTATCAGATACTGGAGCAGATGCAT
GGGGCAAAACTGGTGTGTCATATTGAAGGTCGTTTGCATCATATCTTAT
back to top

Coding sequence (CDS) from alignment at scaffold_14:279903..281301-

>mRNA_6002 ID=mRNA_6002|Name=jgi.p|Nanoce1779_2|593443|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_14:279903..281301- (Nannochloropsis oceanica)
GACGCCGCCATGATTGCCATGGGCTTCGACGACTCCAAGGCTCTGGACGA
AAAAACCCGTGACGGGCTATTTCAACGCATGCTGCGGACGCATGCTCATC
TTGGGTGGGTTATCCATTCCATTCCTGCCGCAGAATTGGCAGGCAAGATG
TTAATGAAAGAGCCGACGAGCTTGAATAAAATAAGTCACGATTCCGCAGC
AGACATGATTTCTCTCGTGTTGGCGGAAGGTGTGTGTGTGACGGAGGTAT
TTGTGGACACAGTGGGCGACCCAGAGATGTACCAGAAGAAGTTGGAAGGA
CTGTTTGCGCACCATTCCCCTCGTATCACGTTTGTGGTGGCGAAGAAAGC
CGATAGCTTGTACAAGACCGTGAGCGCGGCCTCGATTGCTGCCAAGGTGA
CGAGGGACAGGGCCATCAGTGGGTGGGTGTGGGAGGAGGGCTTTCAAGGC
AAAGGTCAAGTGCCGTTGACGAACTTCGGGAGCGGCTACCCGGGGGACGC
CCGTTGCTCGGAATGGCTGAAAGGCAACAGTGACAGCGTGTTTGGCTTTC
CTAGCCTGGTGCGCTTCAGCTGGTCCACGGCCCGGGATCTGATGGAGAAG
GAGTGCGTAAAGGTAGAGTGGGAGGAGGACGAGGAGGATGGGGGGGGGCT
ACCAGCGGGAACGGCGTCGATTGAGGCGTTTATTCGACCCAAGCCGGGGG
CACCCAAAAAGGCACGGAAGAGAGCCAAGTATTTTCAAACGCGGGGCGTG
GAGACAGTGGGGGACTTCTAAATGGCGGCCGACAGCGACGAGAACGAGGC
CCCATGCAGCACCATTACCCCCAGCAGCACCAGTTGCTCAAATGACGAAA
ACAATCCTCCCCCAGCCCTGACCCTCGCGCAGCAGCAACAGGCCGACGAC
GACGCCAAGGGCTTCCCCAAGAATCGCTTCTCGCACGGCGTCACCAAGCT
CTGGCACATCCCACCTTCCCTCAAGACGGGCAAGCCCGTCAAGCTGGGCA
TTGATGAGGCAGGCCGTGGTCCTGTCATGGGACCGATGGTGTATGCGGCG
GCATTTTGGAAGGTGGAAGAGGACGCCGCCATGATTGCCATGGGCTTCGA
CGACTCCAAGGCTCTGGACGAAAAAACCCGTGACGGGCTATTTCAACGCA
TGCTGCGGACGCATGCTCATCTTGGGTGGGTTATCCATTCCATTCCTGCC
GCAGAATTGGCAGGCAAGATGTTAATGAAAGAGCCGACGAGCTTGAATAA
AATAAGTCACGATTCCGCAGCAGACATGATTTCTCTCGTGTTGGCGGAAG
GTGTGTGTGTGACGGAGGTATTTGTGGACACAGTGGGCGACCCAGAGATG
TACCAGAAGAAGTTGGAAGGACTGTTTGCGCACCATTCCCCTCGTATCAC
GTTTGTGGTGGCGAAGAAAGCCGATAGCTTGTACAAGACCGTGAGCGCGG
CCTCGATTGCTGCCAAGGTGACGAGGGACAGGGCCATCAGTGGGTGGGTG
TGGGAGGAGGGCTTTCAAGGCAAAGGTCAAGTGCCGTTGACGAACTTCGG
GAGCGGCTACCCGGGGGACGCCCGTTGCTCGGAATGGCTGAAAGGCAACA
GTGACAGCGTGTTTGGCTTTCCTAGCCTGGTGCGCTTCAGCTGGTCCACG
GCCCGGGATCTGATGGAGAAGGAGTGCGTAAAGGTAGAGTGGGAGGAGGA
CGAGGAGGATGGGGGGGGGCTACCAGCGGGAACGGCGTCGATTGAGGCGT
TTATTCGACCCAAGCCGGGGGCACCCAAAAAGGCACGGAAGAGAGCCAAG
TATTTTCAAACGCGGGGCGTGGAGACAGTGGGGGACTTCTAAATGGCGGC
CGACAGCGACGAGAACGAGGCCCCATGCAGCACCATTACCCCCAGCAGCA
CCAGTTGCTCAAATGACGAAAACAATCCTCCCCCAGCCCTGACCCTCGCG
CAGCAGCAACAGGCCGACGACGACGCCAAGGGCTTCCCCAAGAATCGCTT
CTCGCACGGCGTCACCAAGCTCTGGCACATCCCACCTTCCCTCAAGACGG
GCAAGCCCGTCAAGCTGGGCATTGATGAGGCAGGCCGTGGTCCTGTCATG
GGACCGATGGTGTATGCGGCGGCATTTTGGAAGGTGGAAGAG
back to top
Synonyms
Publications