jgi.p|Nanoce1779_2|577895, mRNA_600 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577895
Unique NamemRNA_600
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length476
Alignment locationscaffold_3:1499595..1500100 -

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Properties
Property NameValue
TranscriptId577981
TrackFilteredModels2
ProteinId577895
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1499595..1500100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577895gene_600Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577895mRNA_600-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_600CDS_600Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_600 ID=mRNA_600|Name=jgi.p|Nanoce1779_2|577895|organism=Nannochloropsis oceanica|type=mRNA|length=476bp
CCCTCCTCCCCCTCGGGATGCCGACAATCCTGGAGGCTGCTTATTTGACC
GGGGAGGTGAGAATATACACATGTCCCTTCTTCTTCTTCTTCTTCTTCTT
GATGTTCTTCTCTTTCCTCTTCTTCTTTTCGTCCTCGCTGATATTGTTGT
TGTTTTCGTTCTTCTTCCTCTTCTTATTCTTTTTCTTCCCATTCCTTAAG
AATGATATTGCACGCACTTCAATCCACATCACACGCCTGATCAGAAACTG
GCCCATTTGCACACACACCTCTGATTTGTTACCCATGTCCTTATTTACAT
ACCACTTACACACACGCATGTGCATCAATTCTCTCCTTTGCGCACACATT
ACTGGACGGACTTATCCACGTCCCCATTTACATGCTGCATGCACACACTA
CACATGCACATACACACACAGTTCTCATGCCCACCTAGACACCCCCGTCC
ATTCCCTCCCTCCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|577895

>mRNA_600-protein ID=mRNA_600-protein|Name=jgi.p|Nanoce1779_2|577895|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MPTILEAAYLTGEVRIYTCPFFFFFFFLMFFSFLFFFSSSLILLLFSFFF
LFLFFFFPFLKNDIARTSIHITRLIRNWPICTHTSDLLPMSLFTYHLHTR
MCINSLLCAHITGRTYPRPHLHAACTHYTCTYTHSSHAHLDTPVHSLPPS
LPP
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mRNA from alignment at scaffold_3:1499595..1500100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_600 ID=mRNA_600|Name=jgi.p|Nanoce1779_2|577895|organism=Nannochloropsis oceanica|type=mRNA|length=506bp|location=Sequence derived from alignment at scaffold_3:1499595..1500100- (Nannochloropsis oceanica)
CCCTCCTCCCCCTCGGGATGCCGACAATCCTGGAGGCTGCTTATTTGACC
GGGGAGGTGAGAATATACACATGTCCCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGATGTTCTTCTCTTTCCTCT
TCTTCTTTTCGTCCTCGCTGATATTGTTGTTGTTTTCGTTCTTCTTCCTC
TTCTTATTCTTTTTCTTCCCATTCCTTAAGAATGATATTGCACGCACTTC
AATCCACATCACACGCCTGATCAGAAACTGGCCCATTTGCACACACACCT
CTGATTTGTTACCCATGTCCTTATTTACATACCACTTACACACACGCATG
TGCATCAATTCTCTCCTTTGCGCACACATTACTGGACGGACTTATCCACG
TCCCCATTTACATGCTGCATGCACACACTACACATGCACATACACACACA
GTTCTCATGCCCACCTAGACACCCCCGTCCATTCCCTCCCTCCCTCCCTC
CCTCCC
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Coding sequence (CDS) from alignment at scaffold_3:1499595..1500100-

>mRNA_600 ID=mRNA_600|Name=jgi.p|Nanoce1779_2|577895|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_3:1499595..1500100- (Nannochloropsis oceanica)
CTTCTTCTTCTTCTTCTTCTTCTTGATGTTCTTCTCTTTCCTCTTCTTCT
TTTCGTCCTCGCTGATATTGTTGTTGTTTTCGTTCTTCTTCCTCTTCTTA
TTCTTTTTCTTCCCATTCCTTAAGAATGATATTGCACGCACTTCAATCCA
CATCACACGCCTGATCAGAAACTGGCCCATTTGCACACACACCTCTGATT
TGTTACCCATGTCCTTATTTACATACCACTTACACACACGCATGTGCATC
AATTCTCTCCTTTGCGCACACATTACTGGACGGACTTATCCACGTCCCCA
TTTACATGCTGCATGCACACACTACACATGCACATACACACACAGTTCTC
ATGCCCACCTAGACACCCCCGTCCATTCCCTCCCTCCCTCCCTCCCTCCC
ATGCCGACAATCCTGGAGGCTGCTTATTTGACCGGGGAGGTGAGAATATA
CACATGTCCCTTCTTCTTCTTCTTCTTCTTCTTGATGTTCTTCTCTTTCC
TCTTCTTCTTTTCGTCCTCGCTGATATTGTTGTTGTTTTCGTTCTTCTTC
CTCTTCTTATTCTTTTTCTTCCCATTCCTTAAGAATGATATTGCACGCAC
TTCAATCCACATCACACGCCTGATCAGAAACTGGCCCATTTGCACACACA
CCTCTGATTTGTTACCCATGTCCTTATTTACATACCACTTACACACACGC
ATGTGCATCAATTCTCTCCTTTGCGCACACATTACTGGACGGACTTATCC
ACGTCCCCATTTACATGCTGCATGCACACACTACACATGCACATACACAC
ACAGTTCTCATGCCCACCTAGACACCCCCGTCCATTCCCTCCCTCCCTCC
CTCCCTCCCATGCCGACAATCCTGGAGGCTGCTTATTTGACCGGGGAGGT
GAGAATATACACATGTCC
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Synonyms
Publications