jgi.p|Nanoce1779_2|229262, mRNA_60 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|229262
Unique Name	mRNA_60
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1234
Alignment location	scaffold_3:170970..172473 +

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Properties


Property Name	Value
TranscriptId	229348
Track	FilteredModels2
ProteinId	229262

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:170970..172473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|229262	gene_60	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|229262	mRNA_60-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_60	CDS_60	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:170970..172473+
coding sequence from alignment at scaffold_3:170970..172473+

mRNA sequence

>mRNA_60 ID=mRNA_60|Name=jgi.p|Nanoce1779_2|229262|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
GGAGGGGATGAGGAGGAGGAGGAGGAAGAAGGGGAGGAGGAAGAGGAGGA
GGAAGAGGAGGACGATATGTTGCCTTCGGGGCCGGGGGGGAGAGCGCAGG
GGGGGATCGAAAGCGAGCCGGCAAGTGGGAGGAACTCGGAGGAGGACGAG
GACGAGGAGGAGGACGAGGACGAGGAGGAGGACGAGGACGAGGAGGAGGA
CGAGGAGGACGAGGACGAGGAAGAGGAAGGCGAAGAGGACGAGGAGGAGG
AGGAAGGCGAGGGTGGGAAGGAGGAAGGAGAGACCCTAGTTACGGGAGAC
GCTGGGAGCGAAACCGCTTCGTCGTTGGCGACCGACAGAGTGCAGGAAGG
GGTGGTTGCGAAGAGGGGTGGAGGAAGAAAACCTAGAGTGTATCGACCTG
TGAGTCGAACGACGGCTTCAAATCCTAGCAGGAACAGGAAGGATGCTGAC
ATGTACGAAACGGACGAGGAGGACTTTGAGAAGGAACGAAAGCCGAAACT
CAAGACCCCTGAGGCGCTGGCAGCTGACGCCGAACTCGCCATCATCAACG
GCGCATTGAACGTGCTGGAGCCGCAGATGCGCGAGGCCTGGAGGGAGGAA
GTCCGGCAAGCCCTCACCCCCTCAGGCCTTGCCCTCTGCTTCTACGCCTT
TGTCCGCCGAACTTATATCGTCCTCCCGGACATCAAGCGTCGCGTCCGGG
CCGTCAAACAACAAGAAATCAATGCCAAGAACTCCATCCTTTCCAACGTT
GAGGCCGGTGCCTTGAACCTCCCCACCCACGAGCTCCCTGTCGTCATCTG
GGCTCGCCTTCCCCGTGGTCCATATTGGCCGGCCCTGGCCCACCGTCCTC
ACCACGCAGGGCTTCAAAAATTGCTCAAGGCCATGGGGCATCGAATGATT
AGGTTTGTGGGTGAGACAGGCGTGTACCATCTCAGGACCGAAGTGGGGTT
GATTGAGGGTTTGGCCCCTCCCGCGGTGGGCGGAAATGCCGCGAGTGTCT
TGTCGTTCGTTGATAAGGATGGAAAGAGTACTGTGGACGTGTTAAAGAAG
GGACGGTCACTGGCCAAGGCGCTCAAGGTGGCGTGGGAATTGCATCGGAA
GTTTGAGGAGGAGGGAAGGTTTGAGGAAGAGGAAGGGTGTGAGGAGAGAG
CCTGGGTCGTCAGGAAGGGAGGAAGGAGGAGGAAGGAGACGGCGACGTAA
GTTGTGAGAGCGGGAACGAGGAAGTGAATGAGGG

protein sequence of jgi.p|Nanoce1779_2|229262

>mRNA_60-protein ID=mRNA_60-protein|Name=jgi.p|Nanoce1779_2|229262|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MLPSGPGGRAQGGIESEPASGRNSEEDEDEEEDEDEEEDEDEEEDEEDED
EEEEGEEDEEEEEGEGGKEEGETLVTGDAGSETASSLATDRVQEGVVAKR
GGGRKPRVYRPVSRTTASNPSRNRKDADMYETDEEDFEKERKPKLKTPEA
LAADAELAIINGALNVLEPQMREAWREEVRQALTPSGLALCFYAFVRRTY
IVLPDIKRRVRAVKQQEINAKNSILSNVEAGALNLPTHELPVVIWARLPR
GPYWPALAHRPHHAGLQKLLKAMGHRMIRFVGETGVYHLRTEVGLIEGLA
PPAVGGNAASVLSFVDKDGKSTVDVLKKGRSLAKALKVAWELHRKFEEEG
RFEEEEGCEERAWVVRKGGRRRKETAT*

mRNA from alignment at scaffold_3:170970..172473+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_60 ID=mRNA_60|Name=jgi.p|Nanoce1779_2|229262|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp|location=Sequence derived from alignment at scaffold_3:170970..172473+ (Nannochloropsis oceanica)
GGAGGGGATGAGGAGGAGGAGGAGGAAGAAGGGGAGGAGGAAGAGGAGGA
GGAAGAGGAGGACGATATGTTGCCTTCGGGGCCGGGGGGGAGAGCGCAGG
GGGGGATCGAAAGCGAGCCGGCAAGTGGGAGGAACTCGGAGGAGGACGAG
GACGAGGAGGAGGACGAGGACGAGGAGGAGGACGAGGACGAGGAGGAGGA
CGAGGAGGACGAGGACGAGGAAGAGGAAGGCGAAGAGGACGAGGAGGAGG
AGGAAGGCGAGGGTGGGAAGGAGGAAGGAGAGACCCTAGTTACGGGAGAC
GCTGGGAGCGAAACCGCTTCGTCGTTGGCGACCGACAGAGTGCAGGAAGG
GGTGGTTGCGAAGAGGGGTGGAGGAAGAAAACCTAGAGTGTATCGACCTG
TGAGTCGAACGACGGCTTCAAATCCTAGCAGGCACCGAGGGAGGAGGAGC
AGTGGGAGTAATGCGGTGATGGGCCTGGTCGGTCTAAATGGCCTGCCCTT
GAGGCCCAAGAGGAGGAGGAGGAGGAGGAGGAACAGGAAGGATGCTGACA
TGTACGAAACGGACGAGGAGGACTTTGAGAAGGAACGAAAGCCGAAACTC
AAGACCCCTGAGGCGCTGGCAGCTGACGCCGAACTCGCCATCATCAACGG
CGCATTGAACGTGCTGGAGCCGCAGATGCGCGAGGCCTGGAGGGAGGAAG
TCCGGCAAGCCCTCACCCCCTCAGGCCTTGCCCTCTGCTTCTACGCCTTT
GTCCGCCGAACTTATATCGTCCTCCCGGACATCAAGCGTCGCGTCCGGGC
CGTCAAACAACAAGAAATCAATGCCAAGAACTCCATCCTTTCCAACGTTG
AGGCCGGTGCCTTGAACCTCCCCACCCACGAGCTCCCTGTCGTCATCTGG
GCTCGCCTTCCCCGTGGTCCATATTGGCCGGCCCTGGCCCACCGTCCTCA
CCACGCAGGGCTTCAAAAATTGCTCAAGGCCATGGGGCATCGAATGATTA
GGTTTGTGGGTGAGACAGGCGTGTACCATCTCAGGACCGAAGTGGGGTTG
ATTGAGGGTTTGGCCCCTCCCGCGGTGGGCGGAAATGCCGCGAGTGTCTT
GTCGTTCGTTGATAAGGATGGAAAGAGTACTGTGGACGTGTTAAAGAAGG
GACGGTCACTGGCCAAGGCGCTCAAGGTGGCGTGGGAATTGCATCGGAAG
TTTGAGGAGGAGGGAAGGGTGGAGGTGGAGGGGGAGGAAGAGGTGGTGGT
GGTGCCTGAGGGAGGGGTGGAGGAGTGGCTAGGGGATTTGAGGGAGGAAG
AGGATGAAGAGGAGGAGGGGGGGGGGGGAAGAGGAAGATGAGGTGACAGA
GTCGGAGGAGGAGGGAGGGAGAAGCGGGGGGAGGAGGAGTTTGAGGAAGA
GGAAGGGTGTGAGGAGAGAGCCTGGGTCGTCAGGAAGGGAGGAAGGAGGA
GGAAGGAGACGGCGACGTAAGTTGTGAGAGCGGGAACGAGGAAGTGAATG
AGGG

Coding sequence (CDS) from alignment at scaffold_3:170970..172473+

>mRNA_60 ID=mRNA_60|Name=jgi.p|Nanoce1779_2|229262|organism=Nannochloropsis oceanica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_3:170970..172473+ (Nannochloropsis oceanica)
ATGTTGCCTTCGGGGCCGGGGGGGAGAGCGCAGGGGGGGATCGAAAGCGA
GCCGGCAAGTGGGAGGAACTCGGAGGAGGACGAGGACGAGGAGGAGGACG
AGGACGAGGAGGAGGACGAGGACGAGGAGGAGGACGAGGAGGACGAGGAC
GAGGAAGAGGAAGGCGAAGAGGACGAGGAGGAGGAGGAAGGCGAGGGTGG
GAAGGAGGAAGGAGAGACCCTAGTTACGGGAGACGCTGGGAGCGAAACCG
CTTCGTCGTTGGCGACCGACAGAGTGCAGGAAGGGGTGGTTGCGAAGAGG
GGTGGAGGAAGAAAACCTAGAGTGTATCGACCTGTGAGTCGAACGACGGC
TTCAAATCCTAGCAGGAACAGGAAGGATGCTGACATGTACGAAACGGACG
AGGAGGACTTTGAGAAGGAACGAAAGCCGAAACTCAAGACCCCTGAGGCG
CTGGCAGCTGACGCCGAACTCGCCATCATCAACGGCGCATTGAACGTGCT
GGAGCCGCAGATGCGCGAGGCCTGGAGGGAGGAAGTCCGGCAAGCCCTCA
CCCCCTCAGGCCTTGCCCTCTGCTTCTACGCCTTTGTCCGCCGAACTTAT
ATCGTCCTCCCGGACATCAAGCGTCGCGTCCGGGCCGTCAAACAACAAGA
AATCAATGCCAAGAACTCCATCCTTTCCAACGTTGAGGCCGGTGCCTTGA
ACCTCCCCACCCACGAGCTCCCTGTCGTCATCTGGGCTCGCCTTCCCCGT
GGTCCATATTGGCCGGCCCTGGCCCACCGTCCTCACCACGCAGGGCTTCA
AAAATTGCTCAAGGCCATGGGGCATCGAATGATTAGGTTTGTGGGTGAGA
CAGGCGTGTACCATCTCAGGACCGAAGTGGGGTTGATTGAGGGTTTGGCC
CCTCCCGCGGTGGGCGGAAATGCCGCGAGTGTCTTGTCGTTCGTTGATAA
GGATGGAAAGAGTACTGTGGACGTGTTAAAGAAGGGACGGTCACTGGCCA
AGGCGCTCAAGGTGGCGTGGGAATTGCATCGGAAGTTTGAGGAGGAGGGA
AGGTTTGAGGAAGAGGAAGGGTGTGAGGAGAGAGCCTGGGTCGTCAGGAA
GGGAGGAAGGAGGAGGAAGGAGACGGCGACGTAAATGTTGCCTTCGGGGC
CGGGGGGGAGAGCGCAGGGGGGGATCGAAAGCGAGCCGGCAAGTGGGAGG
AACTCGGAGGAGGACGAGGACGAGGAGGAGGACGAGGACGAGGAGGAGGA
CGAGGACGAGGAGGAGGACGAGGAGGACGAGGACGAGGAAGAGGAAGGCG
AAGAGGACGAGGAGGAGGAGGAAGGCGAGGGTGGGAAGGAGGAAGGAGAG
ACCCTAGTTACGGGAGACGCTGGGAGCGAAACCGCTTCGTCGTTGGCGAC
CGACAGAGTGCAGGAAGGGGTGGTTGCGAAGAGGGGTGGAGGAAGAAAAC
CTAGAGTGTATCGACCTGTGAGTCGAACGACGGCTTCAAATCCTAGCAGG
AACAGGAAGGATGCTGACATGTACGAAACGGACGAGGAGGACTTTGAGAA
GGAACGAAAGCCGAAACTCAAGACCCCTGAGGCGCTGGCAGCTGACGCCG
AACTCGCCATCATCAACGGCGCATTGAACGTGCTGGAGCCGCAGATGCGC
GAGGCCTGGAGGGAGGAAGTCCGGCAAGCCCTCACCCCCTCAGGCCTTGC
CCTCTGCTTCTACGCCTTTGTCCGCCGAACTTATATCGTCCTCCCGGACA
TCAAGCGTCGCGTCCGGGCCGTCAAACAACAAGAAATCAATGCCAAGAAC
TCCATCCTTTCCAACGTTGAGGCCGGTGCCTTGAACCTCCCCACCCACGA
GCTCCCTGTCGTCATCTGGGCTCGCCTTCCCCGTGGTCCATATTGGCCGG
CCCTGGCCCACCGTCCTCACCACGCAGGGCTTCAAAAATTGCTCAAGGCC
ATGGGGCATCGAATGATTAGGTTTGTGGGTGAGACAGGCGTGTACCATCT
CAGGACCGAAGTGGGGTTGATTGAGGGTTTGGCCCCTCCCGCGGTGGGCG
GAAATGCCGCGAGTGTCTTGTCGTTCGTTGATAAGGATGGAAAGAGTACT
GTGGACGTGTTAAAGAAGGGACGGTCACTGGCCAAGGCGCTCAAGGTGGC
GTGGGAATTGCATCGGAAGTTTGAGGAGGAGGGAAGGTTTGAGGAAGAGG
AAGGGTGTGAGGAGAGAGCCTGGGTCGTCAGGAAGGGAGGAAGGAGGAGG
AAGGAGACGGCGACGTAAATGTTGCCTTCGGGGCCGGGGGGGAGAGCGCA
GGGGGGGATCGAAAGCGAGCCGGCAAGTGGGAGGAACTCGGAGGAGGACG
AGGACGAGGAGGAGGACGAGGACGAGGAGGAGGACGAGGACGAGGAGGAG
GACGAGGAGGACGAGGACGAGGAAGAGGAAGGCGAAGAGGACGAGGAGGA
GGAGGAAGGCGAGGGTGGGAAGGAGGAAGGAGAGACCCTAGTTACGGGAG
ACGCTGGGAGCGAAACCGCTTCGTCGTTGGCGACCGACAGAGTGCAGGAA
GGGGTGGTTGCGAAGAGGGGTGGAGGAAGAAAACCTAGAGTGTATCGACC
TGTGAGTCGAACGACGGCTTCAAATCCTAGCAGGAACAGGAAGGATGCTG
ACATGTACGAAACGGACGAGGAGGACTTTGAGAAGGAACGAAAGCCGAAA
CTCAAGACCCCTGAGGCGCTGGCAGCTGACGCCGAACTCGCCATCATCAA
CGGCGCATTGAACGTGCTGGAGCCGCAGATGCGCGAGGCCTGGAGGGAGG
AAGTCCGGCAAGCCCTCACCCCCTCAGGCCTTGCCCTCTGCTTCTACGCC
TTTGTCCGCCGAACTTATATCGTCCTCCCGGACATCAAGCGTCGCGTCCG
GGCCGTCAAACAACAAGAAATCAATGCCAAGAACTCCATCCTTTCCAACG
TTGAGGCCGGTGCCTTGAACCTCCCCACCCACGAGCTCCCTGTCGTCATC
TGGGCTCGCCTTCCCCGTGGTCCATATTGGCCGGCCCTGGCCCACCGTCC
TCACCACGCAGGGCTTCAAAAATTGCTCAAGGCCATGGGGCATCGAATGA
TTAGGTTTGTGGGTGAGACAGGCGTGTACCATCTCAGGACCGAAGTGGGG
TTGATTGAGGGTTTGGCCCCTCCCGCGGTGGGCGGAAATGCCGCGAGTGT
CTTGTCGTTCGTTGATAAGGATGGAAAGAGTACTGTGGACGTGTTAAAGA
AGGGACGGTCACTGGCCAAGGCGCTCAAGGTGGCGTGGGAATTGCATCGG
AAGTTTGAGGAGGAGGGAAGGTTTGAGGAAGAGGAAGGGTGTGAGGAGAG
AGCCTGGGTCGTCAGGAAGGGAGGAAGGAGGAGGAAGGAGACGGCGACGT
AA

Synonyms

Publications