jgi.p|Nanoce1779_2|575830, mRNA_6 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575830
Unique NamemRNA_6
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length442
Alignment locationscaffold_3:14871..15312 +

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Properties
Property NameValue
TranscriptId575916
TrackFilteredModels2
ProteinId575830
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:14871..15312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575830gene_6Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575830mRNA_6-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6CDS_6Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6 ID=mRNA_6|Name=jgi.p|Nanoce1779_2|575830|organism=Nannochloropsis oceanica|type=mRNA|length=442bp
GTCTTTCTTGCAGTGTTTTTTTCATTAAGGGGGGGGGGGGGGGGCGATTC
CCCGTCGTCCATTCGGGTGGTCTGTCCGGCTCTCTGTCTTCTGTCTTATC
TGTTTTCATTTATTCATTCCGCTATTCCTGCTATGCTCGTCCAGGCGGGC
TGTTTACACAGCTCCTTTCGATTGTGTCCTATCCGTTGCACCTCCTTTTT
CTTTTATCTTTCTTCTTCCACCTACTCCTTTCCCTCTTCCTCGTTTCTTC
TTCCTCCTCGTGTCTTCTTCGCCTACTTCTCCTTCTTTCTTTTCTTTTCG
TCTTCGGGGTTGTCGTATTTTTTCCTTCTCTACCGCGGGACATGTCATGG
TGGACCCCTCGATATATCACCCTACACAGGCGTGCGCCTTCCATGCATCT
AGCACGCAATCATCCCTTTCCCCCTTCCTGCCCCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|575830

>mRNA_6-protein ID=mRNA_6-protein|Name=jgi.p|Nanoce1779_2|575830|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MLVQAGCLHSSFRLCPIRCTSFFFYLSSSTYSFPSSSFLLPPRVFFAYFS
FFLFFSSSGLSYFFLLYRGTCHGGPLDISPYTGVRLPCI*
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mRNA from alignment at scaffold_3:14871..15312+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6 ID=mRNA_6|Name=jgi.p|Nanoce1779_2|575830|organism=Nannochloropsis oceanica|type=mRNA|length=442bp|location=Sequence derived from alignment at scaffold_3:14871..15312+ (Nannochloropsis oceanica)
GTCTTTCTTGCAGTGTTTTTTTCATTAAGGGGGGGGGGGGGGGGCGATTC
CCCGTCGTCCATTCGGGTGGTCTGTCCGGCTCTCTGTCTTCTGTCTTATC
TGTTTTCATTTATTCATTCCGCTATTCCTGCTATGCTCGTCCAGGCGGGC
TGTTTACACAGCTCCTTTCGATTGTGTCCTATCCGTTGCACCTCCTTTTT
CTTTTATCTTTCTTCTTCCACCTACTCCTTTCCCTCTTCCTCGTTTCTTC
TTCCTCCTCGTGTCTTCTTCGCCTACTTCTCCTTCTTTCTTTTCTTTTCG
TCTTCGGGGTTGTCGTATTTTTTCCTTCTCTACCGCGGGACATGTCATGG
TGGACCCCTCGATATATCACCCTACACAGGCGTGCGCCTTCCATGCATCT
AGCACGCAATCATCCCTTTCCCCCTTCCTGCCCCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_3:14871..15312+

>mRNA_6 ID=mRNA_6|Name=jgi.p|Nanoce1779_2|575830|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_3:14871..15312+ (Nannochloropsis oceanica)
ATGCTCGTCCAGGCGGGCTGTTTACACAGCTCCTTTCGATTGTGTCCTAT
CCGTTGCACCTCCTTTTTCTTTTATCTTTCTTCTTCCACCTACTCCTTTC
CCTCTTCCTCGTTTCTTCTTCCTCCTCGTGTCTTCTTCGCCTACTTCTCC
TTCTTTCTTTTCTTTTCGTCTTCGGGGTTGTCGTATTTTTTCCTTCTCTA
CCGCGGGACATGTCATGGTGGACCCCTCGATATATCACCCTACACAGGCG
TGCGCCTTCCATGCATCTAG
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Synonyms
Publications