jgi.p|Nanoce1779_2|593438, mRNA_5999 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593438
Unique Name	mRNA_5999
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1130
Alignment location	scaffold_14:274109..275238 +

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Properties


Property Name	Value
TranscriptId	593524
Track	FilteredModels2
ProteinId	593438

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:274109..275238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593438	gene_5999	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593438	mRNA_5999-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5999	CDS_5999	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:274109..275238+
coding sequence from alignment at scaffold_14:274109..275238+

mRNA sequence

>mRNA_5999 ID=mRNA_5999|Name=jgi.p|Nanoce1779_2|593438|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp
CAACAGCAGGTAGAAGACGATCAGGGGGACTTTGCCGCCTGTCTAGGGGC
AGTCTACTGTCAGCGTGACCTTCTCTGACCGACCTCACTTTCTCGGCACA
CACGGCCTTCATTCCAGCATCGCTCCCGTCATGTCCAGCGGCGAGGACCC
CTTCAGCGCATCACGGGGCCTAGTCCGCACCCCTCCCCGCAAAGACGGTA
GCAACAAATATAGCAGCCGCAGCTTCAGCCATGACACGGCAAACCCGGTG
CACCACACAAGTATGAGCGGTAGGGTGGGCAAGGGCTGCCTGCTTACACC
TGCTTCTACCGAACGCACCCCGCGGTCTTTTCTACGCAAAGGCTCACGGC
AAGAGCCCTCGGCCATACATCGGCTTAAATCGGGGGCTTCCCCGTCTGGC
TCATCGTCGGTCACCAGGAATCCGAGGCCGGGTCACGCTGCTACTCCTAG
GAGCACCAGCACGAGTACCAACCAAGGGTCAAACCGGAAGACCATTTCTT
CTTACTCTTCTCCCTCTTCTGCCACTCGTGATGAGGTACGATCATCGCTA
ATGCCTTCCCCTGCTGGCATTTGTAGGAAAGACACAGTAGCGATGCCCAA
AAGGAGCACTGCCACATCACCAGCACCAGCACCAGCACCAGCACCAGCCC
CTCTCCCTCAGGACCAAGACGACTACCACAAAGAGAGTGATTTCATGATT
AAAAGTCACGAACAATATTCGGAAGAAGGAAGGGAAGATGAGGACAAACA
AGACACGTACACGTCCAACAGCAGCAACAACAAAGACTTCGATTATTACT
GGCCTCCTGTTGCTGCTGCTGCTGTTACTGCTGCTGGATCCGCCGCTAAC
CTGCACTTTTCCTCCTTTTCTTATTATGAAGGGCCGCAATCCCTTCGAAC
TCGACTGTTTGGTCAAGTCTCCGAGGACGAGGAAGAAGGGGAGGGGGAGG
GGTGGAGGTGTGAAGGGGAGAAGGGAGAAATGTTTGAATATGATGCCTCC
TTGTTAAGTGCCGTGAGTGATGTGGAGGGTTGGGAAGCCCGGCATAGGAA
GGAGGTGATAGAGTTTGAGACACTTGAAAAGGCTCTTGAAGGGCTTCCGG
GCATAGGAGGGGGAGGAGGGGGGGAGGGGG

protein sequence of jgi.p|Nanoce1779_2|593438

>mRNA_5999-protein ID=mRNA_5999-protein|Name=jgi.p|Nanoce1779_2|593438|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MRTNKTRTRPTAATTKTSIITGLLLLLLLLLLLDPPLTCTFPPFLIMKGR
NPFELDCLVKSPRTRKKGRGRGGGVKGRREKCLNMMPPC*

mRNA from alignment at scaffold_14:274109..275238+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5999 ID=mRNA_5999|Name=jgi.p|Nanoce1779_2|593438|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp|location=Sequence derived from alignment at scaffold_14:274109..275238+ (Nannochloropsis oceanica)
CAACAGCAGGTAGAAGACGATCAGGGGGACTTTGCCGCCTGTCTAGGGGC
AGTCTACTGTCAGCGTGACCTTCTCTGACCGACCTCACTTTCTCGGCACA
CACGGCCTTCATTCCAGCATCGCTCCCGTCATGTCCAGCGGCGAGGACCC
CTTCAGCGCATCACGGGGCCTAGTCCGCACCCCTCCCCGCAAAGACGGTA
GCAACAAATATAGCAGCCGCAGCTTCAGCCATGACACGGCAAACCCGGTG
CACCACACAAGTATGAGCGGTAGGGTGGGCAAGGGCTGCCTGCTTACACC
TGCTTCTACCGAACGCACCCCGCGGTCTTTTCTACGCAAAGGCTCACGGC
AAGAGCCCTCGGCCATACATCGGCTTAAATCGGGGGCTTCCCCGTCTGGC
TCATCGTCGGTCACCAGGAATCCGAGGCCGGGTCACGCTGCTACTCCTAG
GAGCACCAGCACGAGTACCAACCAAGGGTCAAACCGGAAGACCATTTCTT
CTTACTCTTCTCCCTCTTCTGCCACTCGTGATGAGGTACGATCATCGCTA
ATGCCTTCCCCTGCTGGCATTTGTAGGAAAGACACAGTAGCGATGCCCAA
AAGGAGCACTGCCACATCACCAGCACCAGCACCAGCACCAGCACCAGCCC
CTCTCCCTCAGGACCAAGACGACTACCACAAAGAGAGTGATTTCATGATT
AAAAGTCACGAACAATATTCGGAAGAAGGAAGGGAAGATGAGGACAAACA
AGACACGTACACGTCCAACAGCAGCAACAACAAAGACTTCGATTATTACT
GGCCTCCTGTTGCTGCTGCTGCTGTTACTGCTGCTGGATCCGCCGCTAAC
CTGCACTTTTCCTCCTTTTCTTATTATGAAGGGCCGCAATCCCTTCGAAC
TCGACTGTTTGGTCAAGTCTCCGAGGACGAGGAAGAAGGGGAGGGGGAGG
GGTGGAGGTGTGAAGGGGAGAAGGGAGAAATGTTTGAATATGATGCCTCC
TTGTTAAGTGCCGTGAGTGATGTGGAGGGTTGGGAAGCCCGGCATAGGAA
GGAGGTGATAGAGTTTGAGACACTTGAAAAGGCTCTTGAAGGGCTTCCGG
GCATAGGAGGGGGAGGAGGGGGGGAGGGGG

Coding sequence (CDS) from alignment at scaffold_14:274109..275238+

>mRNA_5999 ID=mRNA_5999|Name=jgi.p|Nanoce1779_2|593438|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_14:274109..275238+ (Nannochloropsis oceanica)
ATGAGGACAAACAAGACACGTACACGTCCAACAGCAGCAACAACAAAGAC
TTCGATTATTACTGGCCTCCTGTTGCTGCTGCTGCTGTTACTGCTGCTGG
ATCCGCCGCTAACCTGCACTTTTCCTCCTTTTCTTATTATGAAGGGCCGC
AATCCCTTCGAACTCGACTGTTTGGTCAAGTCTCCGAGGACGAGGAAGAA
GGGGAGGGGGAGGGGTGGAGGTGTGAAGGGGAGAAGGGAGAAATGTTTGA
ATATGATGCCTCCTTGTTAA

Synonyms

Publications