jgi.p|Nanoce1779_2|631239, mRNA_5998 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631239
Unique NamemRNA_5998
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1643
Alignment locationscaffold_14:272361..274003 -

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Properties
Property NameValue
TranscriptId631325
TrackFilteredModels2
ProteinId631239
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:272361..274003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631239gene_5998Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5998CDS_5998Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631239mRNA_5998-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5998 ID=mRNA_5998|Name=jgi.p|Nanoce1779_2|631239|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp
GATAATCATAGGGCTCGTCCGCTAGCCATTGCTACGGCCTCTTGCAAAAA
CATCAAACACATATTATGCATGTAATCTCTCTCTCCCTTTTTCTTCATCT
TTGTCCACGATGCGAATTAGGAAAAAAAGCCAACTTGATCGGCGCGCTCG
CGCCCCTTCGCGGAATAACCTCCCATTAATCTTATCCACCGCCCACAAAA
CCTACAATCCGAACCCATAGCAGCCCACACCACTGCACCAACTTAGCCAT
GCGTGACAAGCTCTTAGTTTCGAGCAGTAGCAGCGGCAAGCTTCTTTGTG
CCTACGCAGGGGAGCAAGTTTACCTCATCGACACAGCCAGCCAGAGCAGC
AGCAAAATCATAGCCTTGCCTGCCCCTAGCCAACCCGCCGGCAAAGCCGA
TGCTTCCGCGCCGCCTATCACGGCATTGGGGCAAGTGGAGGCCGTGGCCC
TGACTGCCGATGGTAACAAAGCGGCGGCGCTGTATCGGCACAAGGTCCTG
GCCTTGTGGGACATCCGCGACAGCACCGCTCCCGCCCTCCTTGCCCATCG
TCTCTTGCCCAAAAAGGCATTTTCCCTTCTCTTTGCTCAACTAGAAGTAC
CAGGTAACGTGCAAAAAGAAGACACCATCCTTGTCAATGACAAGGTGGGG
GATGTGCGTGCCTATGTTGCCACTACAGAGCTGCTGTCCAAATCGTCAGC
GTTTTTGCTGGGCCACACTGCCTCTGTTGGAACCTGCCTCGACCTCTCTC
CTGATGGCACATGTCTCGCGTCGGGGGACCGAGACGAAAAAGTTCGTCTT
TCGAAGTTTCCTTGTACGTTGATGATTGATGCGTATTTGACAGGGCATGA
TAACTTTATAAGCTCCGTGACATTCATTCGGAGGGGTACGGCGGTGCTGA
CGGGGAGTGGGGACGGAACCCTTGCCTTGTGGGATGCCCAAACAGGGGCT
GAGAAAGTAAAGCGTGTCCTTCCCTTCACCTTAAAAGTGAAAAATGAGAC
CCAAAGGGAGGAGGAGGGGAAGGAGGAGGGAAGTAACGAGCCTAGCAAGA
CGAGGAACAAGGCAACGACCGTACCATGCGCCGTGGCCATTAATCGCGAG
GAAAGTCTCGCAATTGTCACTCTCTTGGGATCGGCTGAGTTGCTCGTTTA
TTCGTTACCGGCTCTAGAGCTGGTGCAGACTTTGAAATTACCCTCCCCAC
CGTTGGGGGCTGTGTGGTTGGAGAAGGGAGGGCAGGAGGGCGGGAAGGAG
GAAGTGCTGTATGTCACGGTGGGCGCACCGGAGTATTTGATGGCTTACGT
TCTTATAGGAAATGAGCTACAGGCACAAATAGAGGAACACTCAGTGGTTG
TAGCGGTGAGATCGTTCGGAATGAAAGCGGGCTTAGAGAGTGAATTGACG
GTCGATGAAGGCGACGAGGGATTCTTAGGGGGGATGACCAAGGAAAATTT
GGAGGTGAGGTTTGAGTGGAACAGCCGCCAAAGAAAGGAGGAGCACGTGG
AGAAGGCGCGACAGAAGCGACAGGAGAAGAGACACAGGGAGAGAGATGAG
AGGATTGCGGGGATGGGGGACGGAGGGAAGAAGGGGAAGCGGGGGGGAGG
AGAGGGAGGGGGGGAGGCCAGCGCGATATCGAAGGAGGGGTAA
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protein sequence of jgi.p|Nanoce1779_2|631239

>mRNA_5998-protein ID=mRNA_5998-protein|Name=jgi.p|Nanoce1779_2|631239|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MRDKLLVSSSSSGKLLCAYAGEQVYLIDTASQSSSKIIALPAPSQPAGKA
DASAPPITALGQVEAVALTADGNKAAALYRHKVLALWDIRDSTAPALLAH
RLLPKKAFSLLFAQLEVPGNVQKEDTILVNDKVGDVRAYVATTELLSKSS
AFLLGHTASVGTCLDLSPDGTCLASGDRDEKVRLSKFPCTLMIDAYLTGH
DNFISSVTFIRRGTAVLTGSGDGTLALWDAQTGAEKVKRVLPFTLKVKNE
TQREEEGKEEGSNEPSKTRNKATTVPCAVAINREESLAIVTLLGSAELLV
YSLPALELVQTLKLPSPPLGAVWLEKGGQEGGKEEVLYVTVGAPEYLMAY
VLIGNELQAQIEEHSVVVAVRSFGMKAGLESELTVDEGDEGFLGGMTKEN
LEVRFEWNSRQRKEEHVEKARQKRQEKRHRERDERIAGMGDGGKKGKRGG
GEGGGEASAISKEG*
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mRNA from alignment at scaffold_14:272361..274003-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5998 ID=mRNA_5998|Name=jgi.p|Nanoce1779_2|631239|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp|location=Sequence derived from alignment at scaffold_14:272361..274003- (Nannochloropsis oceanica)
GATAATCATAGGGCTCGTCCGCTAGCCATTGCTACGGCCTCTTGCAAAAA
CATCAAACACATATTATGCATGTAATCTCTCTCTCCCTTTTTCTTCATCT
TTGTCCACGATGCGAATTAGGAAAAAAAGCCAACTTGATCGGCGCGCTCG
CGCCCCTTCGCGGAATAACCTCCCATTAATCTTATCCACCGCCCACAAAA
CCTACAATCCGAACCCATAGCAGCCCACACCACTGCACCAACTTAGCCAT
GCGTGACAAGCTCTTAGTTTCGAGCAGTAGCAGCGGCAAGCTTCTTTGTG
CCTACGCAGGGGAGCAAGTTTACCTCATCGACACAGCCAGCCAGAGCAGC
AGCAAAATCATAGCCTTGCCTGCCCCTAGCCAACCCGCCGGCAAAGCCGA
TGCTTCCGCGCCGCCTATCACGGCATTGGGGCAAGTGGAGGCCGTGGCCC
TGACTGCCGATGGTAACAAAGCGGCGGCGCTGTATCGGCACAAGGTCCTG
GCCTTGTGGGACATCCGCGACAGCACCGCTCCCGCCCTCCTTGCCCATCG
TCTCTTGCCCAAAAAGGCATTTTCCCTTCTCTTTGCTCAACTAGAAGTAC
CAGGTAACGTGCAAAAAGAAGACACCATCCTTGTCAATGACAAGGTGGGG
GATGTGCGTGCCTATGTTGCCACTACAGAGCTGCTGTCCAAATCGTCAGC
GTTTTTGCTGGGCCACACTGCCTCTGTTGGAACCTGCCTCGACCTCTCTC
CTGATGGCACATGTCTCGCGTCGGGGGACCGAGACGAAAAAGTTCGTCTT
TCGAAGTTTCCTTGTACGTTGATGATTGATGCGTATTTGACAGGGCATGA
TAACTTTATAAGCTCCGTGACATTCATTCGGAGGGGTACGGCGGTGCTGA
CGGGGAGTGGGGACGGAACCCTTGCCTTGTGGGATGCCCAAACAGGGGCT
GAGAAAGTAAAGCGTGTCCTTCCCTTCACCTTAAAAGTGAAAAATGAGAC
CCAAAGGGAGGAGGAGGGGAAGGAGGAGGGAAGTAACGAGCCTAGCAAGA
CGAGGAACAAGGCAACGACCGTACCATGCGCCGTGGCCATTAATCGCGAG
GAAAGTCTCGCAATTGTCACTCTCTTGGGATCGGCTGAGTTGCTCGTTTA
TTCGTTACCGGCTCTAGAGCTGGTGCAGACTTTGAAATTACCCTCCCCAC
CGTTGGGGGCTGTGTGGTTGGAGAAGGGAGGGCAGGAGGGCGGGAAGGAG
GAAGTGCTGTATGTCACGGTGGGCGCACCGGAGTATTTGATGGCTTACGT
TCTTATAGGAAATGAGCTACAGGCACAAATAGAGGAACACTCAGTGGTTG
TAGCGGTGAGATCGTTCGGAATGAAAGCGGGCTTAGAGAGTGAATTGACG
GTCGATGAAGGCGACGAGGGATTCTTAGGGGGGATGACCAAGGAAAATTT
GGAGGTGAGGTTTGAGTGGAACAGCCGCCAAAGAAAGGAGGAGCACGTGG
AGAAGGCGCGACAGAAGCGACAGGAGAAGAGACACAGGGAGAGAGATGAG
AGGATTGCGGGGATGGGGGACGGAGGGAAGAAGGGGAAGCGGGGGGGAGG
AGAGGGAGGGGGGGAGGCCAGCGCGATATCGAAGGAGGGGTAA
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Coding sequence (CDS) from alignment at scaffold_14:272361..274003-

>mRNA_5998 ID=mRNA_5998|Name=jgi.p|Nanoce1779_2|631239|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_14:272361..274003- (Nannochloropsis oceanica)
ATGCGTGACAAGCTCTTAGTTTCGAGCAGTAGCAGCGGCAAGCTTCTTTG
TGCCTACGCAGGGGAGCAAGTTTACCTCATCGACACAGCCAGCCAGAGCA
GCAGCAAAATCATAGCCTTGCCTGCCCCTAGCCAACCCGCCGGCAAAGCC
GATGCTTCCGCGCCGCCTATCACGGCATTGGGGCAAGTGGAGGCCGTGGC
CCTGACTGCCGATGGTAACAAAGCGGCGGCGCTGTATCGGCACAAGGTCC
TGGCCTTGTGGGACATCCGCGACAGCACCGCTCCCGCCCTCCTTGCCCAT
CGTCTCTTGCCCAAAAAGGCATTTTCCCTTCTCTTTGCTCAACTAGAAGT
ACCAGGTAACGTGCAAAAAGAAGACACCATCCTTGTCAATGACAAGGTGG
GGGATGTGCGTGCCTATGTTGCCACTACAGAGCTGCTGTCCAAATCGTCA
GCGTTTTTGCTGGGCCACACTGCCTCTGTTGGAACCTGCCTCGACCTCTC
TCCTGATGGCACATGTCTCGCGTCGGGGGACCGAGACGAAAAAGTTCGTC
TTTCGAAGTTTCCTTGTACGTTGATGATTGATGCGTATTTGACAGGGCAT
GATAACTTTATAAGCTCCGTGACATTCATTCGGAGGGGTACGGCGGTGCT
GACGGGGAGTGGGGACGGAACCCTTGCCTTGTGGGATGCCCAAACAGGGG
CTGAGAAAGTAAAGCGTGTCCTTCCCTTCACCTTAAAAGTGAAAAATGAG
ACCCAAAGGGAGGAGGAGGGGAAGGAGGAGGGAAGTAACGAGCCTAGCAA
GACGAGGAACAAGGCAACGACCGTACCATGCGCCGTGGCCATTAATCGCG
AGGAAAGTCTCGCAATTGTCACTCTCTTGGGATCGGCTGAGTTGCTCGTT
TATTCGTTACCGGCTCTAGAGCTGGTGCAGACTTTGAAATTACCCTCCCC
ACCGTTGGGGGCTGTGTGGTTGGAGAAGGGAGGGCAGGAGGGCGGGAAGG
AGGAAGTGCTGTATGTCACGGTGGGCGCACCGGAGTATTTGATGGCTTAC
GTTCTTATAGGAAATGAGCTACAGGCACAAATAGAGGAACACTCAGTGGT
TGTAGCGGTGAGATCGTTCGGAATGAAAGCGGGCTTAGAGAGTGAATTGA
CGGTCGATGAAGGCGACGAGGGATTCTTAGGGGGGATGACCAAGGAAAAT
TTGGAGGTGAGGTTTGAGTGGAACAGCCGCCAAAGAAAGGAGGAGCACGT
GGAGAAGGCGCGACAGAAGCGACAGGAGAAGAGACACAGGGAGAGAGATG
AGAGGATTGCGGGGATGGGGGACGGAGGGAAGAAGGGGAAGCGGGGGGGA
GGAGAGGGAGGGGGGGAGGCCAGCGCGATATCGAAGGAGGGGTAA
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Synonyms
Publications