|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 593520 |
| Track | FilteredModels2 |
| ProteinId | 593434 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:271049..272237 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5997 ID=mRNA_5997|Name=jgi.p|Nanoce1779_2|593434|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
TAACAACAACATTTGCAGCAGTAGTGGCAGCATTTGTAGGAGCAGTAGTG
TGATGGGAAGTGCTCGTGCCTGGTTCAGCAGGCATGTTCTTCTGCTCCAG
GGGATAGGAGAGATGAGCAGGAGCAGCAGCAGCAGTAGCAACACCCCGCC
AATACTGCTTGTTTTTGGGATTCGTCTCCTTAGCCTTTTGTCCGTCGCTT
TCATGGCTTATGCCACTTTCTCCTCCGTCCTGTCCGTCACGGAACTGGTT
TTCAAAAAGCGGTACAAGTACTCCAAGCTTTTCTCGATGCTGACCTCGCT
CAGCAAAGCGGGCCGGTATTCCATCCCTCACTTTACGCTCAAGAACCCTC
TCAATATTAAGATGTGGCTGGCACTCAGGGCGGGCCGCACCTGGCTCCGC
CGCTACGAAGCCCAACGCGTGGCCGACACCGTTGTCTCCTCCACTTTTCG
AATCGTTGTCCTCCTCCTCACCATTTTATGCGTCGAGTTTTTCCTGTGCA
AGGACATGCGCCCTTTTCTCACCGAGCTCTGGCATTGGGAGCTACTCGTC
TGGGGCGGGATTTCCTCTGTCTACCTCCTACGCTTTATCTCCCTCGGCAC
GAGAACAAACGAGAAATTCGGGGACACCACCATCCTCATCACCGAACAAC
TTAACGTCCAAATCCGAATTTTTGAACTCAGCTGTCGTAGTACCTACGAT
CGGGCCAAGAAAGAGAAGTTGCAGATATCTTCGAATGTGCTCAAGCTGGC
CGTGAAACTGTTGAAGGAATTGGAGGGTCCGAATCGGGTGAGTGGGTTAA
GCATGAGTCCCATGCTAGTGAGGGTAACAAGGGTCATCATGTTGTCGGCG
CTGAGCGCGCTGGTGAGTGATGTGTTTGGGTTCAAGCTCAAGGTAAACCA
ATTGCTGAAGTAGGAGGAGGACGAAGAGGAGGAAGGGAAGAAGGGAAGGA
AGATTATAGGGTCCTTGCAGATTTCACCATATTGTCGGCGCTGTGTGCGC
TAGTGAGCAATACAGGACCGAAAAAAGAAACACGTACAGCATCTTATCCA
AC back to topprotein sequence of jgi.p|Nanoce1779_2|593434 >mRNA_5997-protein ID=mRNA_5997-protein|Name=jgi.p|Nanoce1779_2|593434|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MGSARAWFSRHVLLLQGIGEMSRSSSSSSNTPPILLVFGIRLLSLLSVAF
MAYATFSSVLSVTELVFKKRYKYSKLFSMLTSLSKAGRYSIPHFTLKNPL
NIKMWLALRAGRTWLRRYEAQRVADTVVSSTFRIVVLLLTILCVEFFLCK
DMRPFLTELWHWELLVWGGISSVYLLRFISLGTRTNEKFGDTTILITEQL
NVQIRIFELSCRSTYDRAKKEKLQISSNVLKLAVKLLKELEGPNRVSGLS
MSPMLVRVTRVIMLSALSALVSDVFGFKLKVNQLLK* back to topmRNA from alignment at scaffold_14:271049..272237+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5997 ID=mRNA_5997|Name=jgi.p|Nanoce1779_2|593434|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at scaffold_14:271049..272237+ (Nannochloropsis oceanica)
TAACAACAACATTTGCAGCAGTAGTGGCAGCATTTGTAGGAGCAGTAGTG
TGATGGGAAGTGCTCGTGCCTGGTTCAGCAGGCATGTTCTTCTGCTCCAG
GGGATAGGAGAGATGAGCAGGAGCAGCAGCAGCAGTAGCAACACCCCGCC
AATACTGCTTGTTTTTGGGATTCGTCTCCTTAGCCTTTTGTCCGTCGCTT
TCATGGCTTATGCCACTTTCTCCTCCGTCCTGTCCGTCACGGAACTGGTT
TTCAAAAAGCGGTACAAGTACTCCAAGCTTTTCTCGATGCTGACCTCGCT
CAGCAAAGCGGGCCGGTATTCCATCCCTCACTTTACGCTCAAGAACCCTC
TCAATATTAAGATGTGGCTGGCACTCAGGTAAATTCTCCTCCCTCCCCTT
CCCCTTCTTTCATTCTTCTCCCTCTCCAAACTTTGATTCTGTCCCTGGAT
GCCCAGTTCATGTTGCCATCTTTTCCTTCACAATTTCCCTCCCTCTCTCT
TCCCCTTCCCCCCAGGGCGGGCCGCACCTGGCTCCGCCGCTACGAAGCCC
AACGCGTGGCCGACACCGTTGTCTCCTCCACTTTTCGAATCGTTGTCCTC
CTCCTCACCATTTTATGCGTCGAGTTTTTCCTGTGCAAGGACATGCGCCC
TTTTCTCACCGAGCTCTGGCATTGGGAGCTACTCGTCTGGGGCGGGATTT
CCTCTGTCTACCTCCTACGCTTTATCTCCCTCGGCACGAGAACAAACGAG
AAATTCGGGGACACCACCATCCTCATCACCGAACAACTTAACGTCCAAAT
CCGAATTTTTGAACTCAGCTGTCGTAGTACCTACGATCGGGCCAAGAAAG
AGAAGTTGCAGATATCTTCGAATGTGCTCAAGCTGGCCGTGAAACTGTTG
AAGGAATTGGAGGGTCCGAATCGGGTGAGTGGGTTAAGCATGAGTCCCAT
GCTAGTGAGGGTAACAAGGGTCATCATGTTGTCGGCGCTGAGCGCGCTGG
TGAGTGATGTGTTTGGGTTCAAGCTCAAGGTAAACCAATTGCTGAAGTAG
GAGGAGGACGAAGAGGAGGAAGGGAAGAAGGGAAGGAAGATTATAGGGTC
CTTGCAGATTTCACCATATTGTCGGCGCTGTGTGCGCTAGTGAGCAATAC
AGGACCGAAAAAAGAAACACGTACAGCATCTTATCCAAC back to topCoding sequence (CDS) from alignment at scaffold_14:271049..272237+ >mRNA_5997 ID=mRNA_5997|Name=jgi.p|Nanoce1779_2|593434|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_14:271049..272237+ (Nannochloropsis oceanica)
ATGGGAAGTGCTCGTGCCTGGTTCAGCAGGCATGTTCTTCTGCTCCAGGG
GATAGGAGAGATGAGCAGGAGCAGCAGCAGCAGTAGCAACACCCCGCCAA
TACTGCTTGTTTTTGGGATTCGTCTCCTTAGCCTTTTGTCCGTCGCTTTC
ATGGCTTATGCCACTTTCTCCTCCGTCCTGTCCGTCACGGAACTGGTTTT
CAAAAAGCGGTACAAGTACTCCAAGCTTTTCTCGATGCTGACCTCGCTCA
GCAAAGCGGGCCGGTATTCCATCCCTCACTTTACGCTCAAGAACCCTCTC
AATATTAAGATGTGGCTGGCACTCAGGGCGGGCCGCACCTGGCTCCGCCG
CTACGAAGCCCAACGCGTGGCCGACACCGTTGTCTCCTCCACTTTTCGAA
TCGTTGTCCTCCTCCTCACCATTTTATGCGTCGAGTTTTTCCTGTGCAAG
GACATGCGCCCTTTTCTCACCGAGCTCTGGCATTGGGAGCTACTCGTCTG
GGGCGGGATTTCCTCTGTCTACCTCCTACGCTTTATCTCCCTCGGCACGA
GAACAAACGAGAAATTCGGGGACACCACCATCCTCATCACCGAACAACTT
AACGTCCAAATCCGAATTTTTGAACTCAGCTGTCGTAGTACCTACGATCG
GGCCAAGAAAGAGAAGTTGCAGATATCTTCGAATGTGCTCAAGCTGGCCG
TGAAACTGTTGAAGGAATTGGAGGGTCCGAATCGGGTGAGTGGGTTAAGC
ATGAGTCCCATGCTAGTGAGGGTAACAAGGGTCATCATGTTGTCGGCGCT
GAGCGCGCTGGTGAGTGATGTGTTTGGGTTCAAGCTCAAGGTAAACCAAT
TGCTGAAGTAGATGGGAAGTGCTCGTGCCTGGTTCAGCAGGCATGTTCTT
CTGCTCCAGGGGATAGGAGAGATGAGCAGGAGCAGCAGCAGCAGTAGCAA
CACCCCGCCAATACTGCTTGTTTTTGGGATTCGTCTCCTTAGCCTTTTGT
CCGTCGCTTTCATGGCTTATGCCACTTTCTCCTCCGTCCTGTCCGTCACG
GAACTGGTTTTCAAAAAGCGGTACAAGTACTCCAAGCTTTTCTCGATGCT
GACCTCGCTCAGCAAAGCGGGCCGGTATTCCATCCCTCACTTTACGCTCA
AGAACCCTCTCAATATTAAGATGTGGCTGGCACTCAGGGCGGGCCGCACC
TGGCTCCGCCGCTACGAAGCCCAACGCGTGGCCGACACCGTTGTCTCCTC
CACTTTTCGAATCGTTGTCCTCCTCCTCACCATTTTATGCGTCGAGTTTT
TCCTGTGCAAGGACATGCGCCCTTTTCTCACCGAGCTCTGGCATTGGGAG
CTACTCGTCTGGGGCGGGATTTCCTCTGTCTACCTCCTACGCTTTATCTC
CCTCGGCACGAGAACAAACGAGAAATTCGGGGACACCACCATCCTCATCA
CCGAACAACTTAACGTCCAAATCCGAATTTTTGAACTCAGCTGTCGTAGT
ACCTACGATCGGGCCAAGAAAGAGAAGTTGCAGATATCTTCGAATGTGCT
CAAGCTGGCCGTGAAACTGTTGAAGGAATTGGAGGGTCCGAATCGGGTGA
GTGGGTTAAGCATGAGTCCCATGCTAGTGAGGGTAACAAGGGTCATCATG
TTGTCGGCGCTGAGCGCGCTGGTGAGTGATGTGTTTGGGTTCAAGCTCAA
GGTAAACCAATTGCTGAAGTAG back to top
|