jgi.p|Nanoce1779_2|631238, mRNA_5996 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631238
Unique NamemRNA_5996
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1085
Alignment locationscaffold_14:268659..269793 +

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Properties
Property NameValue
TranscriptId631324
TrackFilteredModels2
ProteinId631238
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:268659..269793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631238gene_5996Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631238mRNA_5996-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5996CDS_5996Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5996 ID=mRNA_5996|Name=jgi.p|Nanoce1779_2|631238|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp
AGGAGGAGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAAGAGGAGCAACAG
CAGCAGGAGGAGGAGGCGAAATAGGTGGAGGAGGTGCATGAAGTGGGGGA
TCTTTACGGATGAAAGGGCAGAAGGAGGGAGTGGTCGCGATTGCGGGTGC
TCTGGGAGCGTAAAAAAGCAAGAAGAGATGGAATTTGCAGTAGCTAAAGC
TTTTGGTATGATGAAAGCAATGTATAGGAATTGCAAAGCAATGAACCAAA
CACCACCACTTGGCACAATGAAACAAAATCACGCTTTGATCCGACGACGA
CGTCTACATCCTCGACACATTCTCACTTTCCTATCATTTCACATGACCCA
CACCACCCACCACGTACACAAGGGACACAACGACACCAGCATGGTCGTGG
ATAAAGATAAAGATAATGGATTAAACGCGGCGAAATCGACGCCGTTCCAG
GGCAATCGCTGCACCAACAAGCCCCCTCCTGACGTCAACAACGTTCACAA
CGTCAACACAAGACACGACCTTGTGTCGGACCCTCCGTCGCCCCCTCACG
ATCAGAAGTTAAACGGGACTGCCTACATGGCCCACATCCGCCCAAATCTC
CTTGATGTCGACTCCATTCGCACAGCCGGGGCTTTCAGTACCGAACCGGC
AAAGTTCTCATCTGTCTATTGGAGAGGCATTTTGCGCGTCCTCTTCTTCC
CCTTGGCCTACCCCTGGTGGAAAAGAAGGCGACTGTCCCTCGTCACCTTT
TGTATCGGCTCATTTCTATACCTGGGACAAGGCCTGGCTTCCTTCATTGT
GCTTTGGGGCGATTGGCAGGGGCTGATGAGTTGGGGTAGCGGAGAGTGGG
AGGAATGGGAGGAAGGTCGGGAGGGCAACCCTATTCATGACGATGGCAAG
GCATGGAAGCAGTTGCAGGCCGAAGTGATTCTTCCAATTGTGCTATGGTT
ATTTTGCGCCTTGGCGTATGGCCACATATGTGCCGCGTCCCAATCAGACG
GCATGAAGAAGAAGAAGAGGAGGGTGGTGACAGCAACCCCCATCAAGGCC
AAGGAGGAGAGAGAGAAGAAGCACGTATCGGAAAC
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protein sequence of jgi.p|Nanoce1779_2|631238

>mRNA_5996-protein ID=mRNA_5996-protein|Name=jgi.p|Nanoce1779_2|631238|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MKWGIFTDERAEGGSGRDCGCSGSVKKQEEMEFAVAKAFGMMKAMYRNCK
AMNQTPPLGTMKQNHALIRRRRLHPRHILTFLSFHMTHTTHHVHKGHNDT
SMVVDKDKDNGLNAAKSTPFQGNRCTNKPPPDVNNVHNVNTRHDLVSDPP
SPPHDQKLNGTAYMAHIRPNLLDVDSIRTAGAFSTEPAKFSSVYWRGILR
VLFFPLAYPWWKRRRLSLVTFCIGSFLYLGQGLASFIVLWGDWQGLMSWG
SGEWEEWEEGREGNPIHDDGKAWKQLQAEVILPIVLWLFCALAYGHICAA
SQSDGMKKKKRRVVTATPIKAKEEREKKHVSE
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mRNA from alignment at scaffold_14:268659..269793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5996 ID=mRNA_5996|Name=jgi.p|Nanoce1779_2|631238|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp|location=Sequence derived from alignment at scaffold_14:268659..269793+ (Nannochloropsis oceanica)
AGGAGGAGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAAGAGGAGCAACAG
CAGCAGGAGGAGGAGGCGAAATAGGTGGAGGAGGTGCATGAAGTGGGGGA
TCTTTACGGATGAAAGGGCAGAAGGAGGGAGTGGTCGCGATTGCGGGTGC
TCTGGGAGCGTAAAAAAGCAAGAAGAGATGGAATTTGCAGTAGCTAAAGC
TTTTGGTATGATGAAAGCAATGTATAGGAATTGCAAAGCAATGAACCAAA
CGTAAGTATATATTTGTGTCTTGTCCATTATTTGTTGCTTTGCGTTCCCA
GACCACCACTTGGCACAATGAAACAAAATCACGCTTTGATCCGACGACGA
CGTCTACATCCTCGACACATTCTCACTTTCCTATCATTTCACATGACCCA
CACCACCCACCACGTACACAAGGGACACAACGACACCAGCATGGTCGTGG
ATAAAGATAAAGATAATGGATTAAACGCGGCGAAATCGACGCCGTTCCAG
GGCAATCGCTGCACCAACAAGCCCCCTCCTGACGTCAACAACGTTCACAA
CGTCAACACAAGACACGACCTTGTGTCGGACCCTCCGTCGCCCCCTCACG
ATCAGAAGTTAAACGGGACTGCCTACATGGCCCACATCCGCCCAAATCTC
CTTGATGTCGACTCCATTCGCACAGCCGGGGCTTTCAGTACCGAACCGGC
AAAGTTCTCATCTGTCTATTGGAGAGGCATTTTGCGCGTCCTCTTCTTCC
CCTTGGCCTACCCCTGGTGGAAAAGAAGGCGACTGTCCCTCGTCACCTTT
TGTATCGGCTCATTTCTATACCTGGGACAAGGCCTGGCTTCCTTCATTGT
GCTTTGGGGCGATTGGCAGGGGCTGATGAGTTGGGGTAGCGGAGAGTGGG
AGGAATGGGAGGAAGGTCGGGAGGGCAACCCTATTCATGACGATGGCAAG
GCATGGAAGCAGTTGCAGGCCGAAGTGATTCTTCCAATTGTGCTATGGTT
ATTTTGCGCCTTGGCGTATGGCCACATATGTGCCGCGTCCCAATCAGACG
GCATGAAGAAGAAGAAGAGGAGGGTGGTGACAGCAACCCCCATCAAGGCC
AAGGAGGAGAGAGAGAAGAAGCACGTATCGGAAAC
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Coding sequence (CDS) from alignment at scaffold_14:268659..269793+

>mRNA_5996 ID=mRNA_5996|Name=jgi.p|Nanoce1779_2|631238|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_14:268659..269793+ (Nannochloropsis oceanica)
ATGAAGTGGGGGATCTTTACGGATGAAAGGGCAGAAGGAGGGAGTGGTCG
CGATTGCGGGTGCTCTGGGAGCGTAAAAAAGCAAGAAGAGATGGAATTTG
CAGTAGCTAAAGCTTTTGGTATGATGAAAGCAATGTATAGGAATTGCAAA
GCAATGAACCAAACACCACCACTTGGCACAATGAAACAAAATCACGCTTT
GATCCGACGACGACGTCTACATCCTCGACACATTCTCACTTTCCTATCAT
TTCACATGACCCACACCACCCACCACGTACACAAGGGACACAACGACACC
AGCATGGTCGTGGATAAAGATAAAGATAATGGATTAAACGCGGCGAAATC
GACGCCGTTCCAGGGCAATCGCTGCACCAACAAGCCCCCTCCTGACGTCA
ACAACGTTCACAACGTCAACACAAGACACGACCTTGTGTCGGACCCTCCG
TCGCCCCCTCACGATCAGAAGTTAAACGGGACTGCCTACATGGCCCACAT
CCGCCCAAATCTCCTTGATGTCGACTCCATTCGCACAGCCGGGGCTTTCA
GTACCGAACCGGCAAAGTTCTCATCTGTCTATTGGAGAGGCATTTTGCGC
GTCCTCTTCTTCCCCTTGGCCTACCCCTGGTGGAAAAGAAGGCGACTGTC
CCTCGTCACCTTTTGTATCGGCTCATTTCTATACCTGGGACAAGGCCTGG
CTTCCTTCATTGTGCTTTGGGGCGATTGGCAGGGGCTGATGAGTTGGGGT
AGCGGAGAGTGGGAGGAATGGGAGGAAGGTCGGGAGGGCAACCCTATTCA
TGACGATGGCAAGGCATGGAAGCAGTTGCAGGCCGAAGTGATTCTTCCAA
TTGTGCTATGGTTATTTTGCGCCTTGGCGTATGGCCACATATGTGCCGCG
TCCCAATCAGACGGCATGAAGAAGAAGAAGAGGAGGGTGGTGACAGCAAC
CCCCATCAAGGCCAAGGAGGAGAGAGAGAAGAAGCACGTATCGGAAATGA
AGTGGGGGATCTTTACGGATGAAAGGGCAGAAGGAGGGAGTGGTCGCGAT
TGCGGGTGCTCTGGGAGCGTAAAAAAGCAAGAAGAGATGGAATTTGCAGT
AGCTAAAGCTTTTGGTATGATGAAAGCAATGTATAGGAATTGCAAAGCAA
TGAACCAAACACCACCACTTGGCACAATGAAACAAAATCACGCTTTGATC
CGACGACGACGTCTACATCCTCGACACATTCTCACTTTCCTATCATTTCA
CATGACCCACACCACCCACCACGTACACAAGGGACACAACGACACCAGCA
TGGTCGTGGATAAAGATAAAGATAATGGATTAAACGCGGCGAAATCGACG
CCGTTCCAGGGCAATCGCTGCACCAACAAGCCCCCTCCTGACGTCAACAA
CGTTCACAACGTCAACACAAGACACGACCTTGTGTCGGACCCTCCGTCGC
CCCCTCACGATCAGAAGTTAAACGGGACTGCCTACATGGCCCACATCCGC
CCAAATCTCCTTGATGTCGACTCCATTCGCACAGCCGGGGCTTTCAGTAC
CGAACCGGCAAAGTTCTCATCTGTCTATTGGAGAGGCATTTTGCGCGTCC
TCTTCTTCCCCTTGGCCTACCCCTGGTGGAAAAGAAGGCGACTGTCCCTC
GTCACCTTTTGTATCGGCTCATTTCTATACCTGGGACAAGGCCTGGCTTC
CTTCATTGTGCTTTGGGGCGATTGGCAGGGGCTGATGAGTTGGGGTAGCG
GAGAGTGGGAGGAATGGGAGGAAGGTCGGGAGGGCAACCCTATTCATGAC
GATGGCAAGGCATGGAAGCAGTTGCAGGCCGAAGTGATTCTTCCAATTGT
GCTATGGTTATTTTGCGCCTTGGCGTATGGCCACATATGTGCCGCGTCCC
AATCAGACGGCATGAAGAAGAAGAAGAGGAGGGTGGTGACAGCAACCCCC
ATCAAGGCCAAGGAGGAGAGAGAGAAGAAGCACGTATCGGAA
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Synonyms
Publications