jgi.p|Nanoce1779_2|671675, mRNA_5994 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671675
Unique Name	mRNA_5994
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3102
Alignment location	scaffold_14:265090..268372 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671761
Track	FilteredModels2
ProteinId	671675

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:265090..268372 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671675	gene_5994	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671675	mRNA_5994-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5994	CDS_5994	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:265090..268372+
coding sequence from alignment at scaffold_14:265090..268372+

mRNA sequence

>mRNA_5994 ID=mRNA_5994|Name=jgi.p|Nanoce1779_2|671675|organism=Nannochloropsis oceanica|type=mRNA|length=3102bp
AAAAAAAAAAAAAAAAAAAGGGAGAGAGAGAGAGAGGCGAAGACGGGAGA
GACGAAAAGAAAAATGATGTCTGAGTAGAGGATTGAAGGCAGCCTAGGCA
GAGCATTAATGAAGATTAAACCAAGATTGACACAAAGGAATAACAAGATA
ACAAGAGTTATGTTCATGCCAAGCAGAGCGGACGTATCCTACATTCACCA
TCGTTCGTTTAAAACCGAGAATTTGACCGTACCATTAAAATAAGGGCACA
AAACATAACACCAAGTGTGAAGTGCACACAACACTCACATACACACAAAC
GGAAAGCATAGCGAGAGAGGAAAGACAAAATGGGAGCATTGCTGTTGTTG
CGGTGTTGGTGTTCTCTTTCTATATCAGAGCCCTTCGGATACCTCATTAC
GACAGCCCTTCCTCGCCCTGGCACGACCACTACAGCTCCAACCAGCACCC
ACAGACGAGACCGATCGAGACAACAAGACGAGAAATTAAAAATAAAACCA
ATCCTCTTTCTCCCTTCCCTCCTCTGTCCCCGTCATTTCTTCTTGCTGGC
GTGGGGGGGAGAAATTGGCCCGTATCATAGCAAGCGAAATCAGACACTCT
GTCTCAAGACTTGCCTCGACTCTCATCACACGGCCTGCTTTCTTTTTTGT
TTCCTCTTTTACTGTATCATCTCCCCTGGTTGCGTGATTGGATTGTGGTG
GTGGCGGTGATGTCGAAATAGCCTGCTAACGGACCATTTACTGTCATGAG
GGAGGGAGGGAGGGAAGGAGGGAGGGAGGGGGGACAGGAATGAGTGAGAG
GTGTAGGCGGTCGATGCGCCCACACTGCTCATTTCCCACTCGTTCCCTTG
AAACCAGCAATTCCCCATATCTTTTCAATCCCCCATCCCTCCTATCCGCC
TCCCGTGTTCAATTTTCTATCCCAAACATACCTTGCGCTCCGAGTCCTGG
TATCCGTTGAAGAACTCCTCGTTGTCCTGCTTGTTGGACCAGCTCGAGAA
GAGGAAGGCAAAGGCGGCGCCGATGGAAGCGATGATAGGCAGGATACGAG
GATCATCCACGCCGAGCACCTTGTGATTGGGAGGAGGAAGAAGGGAACGG
GGGCAGAAGCGAATAAGCATCTCATGCCTGCTGAGGGCAACAGAGCATCG
AATAGTCGCGGCAGTGTCGGTATCCCCCTCTTTCCCCACTCTTCAAAAAG
GACACATACCTCGCCAGTGCCCTCGGTGGCAAAGACGGGGGAGGCAAGGA
TGAGGGGCGTGAGGCCCGCCAGGGCGGACTTTCCGGTCTTGACCACCTCG
GTCATCTTGTTGTTTGTGGCAGACATCTTGATCGCCTGGCGAGTACGGAG
GGGGCCAGTGGGCATGAAGCCCAGGGCGGCCTGCATGCACACCAAGAGGA
TAGCGAGGGAGAAGAAGACCTTCATCTTGACTGGGAGTGGGGTGGTGGGT
GGACTGTGTCATGCGAGGGAAGGAACAGGAAAGGAAGGGAAGGGGCAGGG
GGAAGGGTGAGTTCTTCAATTATTCGAATAATCTGTCGCGGGCAGATTAA
AGACAGCGCTGAGACCCTGGCCACATAGTCCTATTTAAATAAGTTACGAA
TGCATAGCTATCCATGCACTGGCCCTCGCTGGCTCTTTTGAGTGCTTTGG
GTGCACGTGAAGCAAGAAGGGGTTGCAGTAGCCTAGGGCAGGGTTACAGA
TTTGGTCGCATGCCTAGTGAGAAGGCCAATCAAAGCGCCCTCTTGTACGC
CCACACAGTCGTGGCTAGAAAGACAGCGTTTTGGATTTCAGGAGTGAGGT
TTGTGGTGTGTGTATCAAACACAAGACAGGAAGGGATGGGCTTGCCTGGT
GTAGCAATGTCTGGCGAGATATCTGCGAGTTCAATGCATCGGTCCGAGGG
AGGGAAGGAGAATGAGAGTTTGGGCCGCATGTTGGTTGGAAAGGAAGCGT
TTCTGGGTTGCTTCTTAAATTTATTTTAAGGCTGGACTTACGTTTCATGT
CGATGCTAACACAAAAACCATACAGAAAGAAGGTGGACAGCAAGCCATGT
CGACCTGGTCATACTGCAGTCGGCTGCCCCACACAAAAGATTGAGCTTCA
ATTACGTTCTCCTCCCAATCCCAGCTTGGACACGCAACCACAACTACATT
ACCCCCTCCCCCTTGCCCGCCGAGGCCCTGCACGAATGCCTGGTCACAAA
CCACGTATGCTACTACCAGCTTGTCATCGTGTCTCACTTTTGTCCTTCTT
CTCTTTGTCACTGGCATCCTCAGCGGTACCAACGCCACCACTACCGCTGC
CCTGCCCCCTCCTGCCCCTTTCAAAGTTCCTACCCCACGTGGCACCCTGG
TGTACTGCGTGTTCGAGGACTCACGCATTTTTTCGCTCAAGCTGATGACA
AACACCCATTCCTGTTACATTTCTACTAGTTTGGGCCCTGTGCATGTGGT
CCGATGCGCGGGAAAGCTTGGAGCAAGCCTCCCTCCAGTGGTGCTCGTGC
ACGGCGTTTGTTCTACTGATGTAATCGTGCGCGATCTGCCAGGACATGAC
AAAAGTGGCATCCACGTGGACGATCCGATCTTCCGAACCGTTGTCGCGAG
TATTGTCGATGTGATATATCATACTATCATCACAACTCCTCTTACCACAA
CTGCCGTACCTTCAACCGCCGACGATAAAAAAGCAGAGCCACCAGGGTCA
AAGACTCTTAGTTCACGCCCAAAAATCCTCTTGTCAACAATCCCCTTGGT
GGGCTCGTTGCCATTCGTGTCGCCCTCCAGCTCCCTGGCATGATCGCAGC
CCTCTGCCTCATCTCCCCAGCGGGTGCTCCTCTCACCGCCACCGAAATAA
GCGAGATTTTTTTGTTTTCAATGTCAAAATCAACAAGAAGGTCTAGCATT
CGTTGATGGGATATGCGGTTTTCCTGAACGGCGGCCGAGAACCTTTAGAG
CGATCATAAGCTGGGCATGTCGGATGCTAATGAGTAGTGGGTCAATCCAT
GTGATAAAGAACAAAGCACAGCCCCCGCTCATGCTCAGTAAGAAGGACTT
GAAAGGTTTAAATTATACCCCCATATTGTTTGTCTGGGGAAAGCATGAGA
AG

protein sequence of jgi.p|Nanoce1779_2|671675

>mRNA_5994-protein ID=mRNA_5994-protein|Name=jgi.p|Nanoce1779_2|671675|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MTNTHSCYISTSLGPVHVVRCAGKLGASLPPVVLVHGVCSTDVIVRDLPG
HDKSGIHVDDPIFRTVVASIVDVIYHTIITTPLTTTAVPSTADDKKAEPP
GSKTLSSRPKILLSTIPLVGSLPFVSPSSSLA*

mRNA from alignment at scaffold_14:265090..268372+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5994 ID=mRNA_5994|Name=jgi.p|Nanoce1779_2|671675|organism=Nannochloropsis oceanica|type=mRNA|length=3283bp|location=Sequence derived from alignment at scaffold_14:265090..268372+ (Nannochloropsis oceanica)
AAAAAAAAAAAAAAAAAAAGGGAGAGAGAGAGAGAGGCGAAGACGGGAGA
GACGAAAAGAAAAATGATGTCTGAGTAGAGGATTGAAGGCAGCCTAGGCA
GAGCATTAATGAAGATTAAACCAAGATTGACACAAAGGAATAACAAGATA
ACAAGAGTTATGTTCATGCCAAGCAGAGCGGACGTATCCTACATTCACCA
TCGTTCGTTTAAAACCGAGAATTTGACCGTACCATTAAAATAAGGGCACA
AAACATAACACCAAGTGTGAAGTGCACACAACACTCACATACACACAAAC
GGAAAGCATAGCGAGAGAGGAAAGACAAAATGGGAGCATTGCTGTTGTTG
CGGTGTTGGTGTTCTCTTTCTATATCAGAGCCCTTCGGATACCTCATTAC
GACAGCCCTTCCTCGCCCTGGCACGACCACTACAGCTCCAACCAGCACCC
ACAGACGAGACCGATCGAGACAACAAGACGAGAAATTAAAAATAAAACCA
ATCCTCTTTCTCCCTTCCCTCCTCTGTCCCCGTCATTTCTTCTTGCTGGC
GTGGGGGGGAGAAATTGGCCCGTATCATAGCAAGCGAAATCAGACACTCT
GTCTCAAGACTTGCCTCGACTCTCATCACACGGCCTGCTTTCTTTTTTGT
TTCCTCTTTTACTGTATCATCTCCCCTGGTTGCGTGATTGGATTGTGGTG
GTGGCGGTGATGTCGAAATAGCCTGCTAACGGACCATTTACTGTCATGAG
GGAGGGAGGGAGGGAAGGAGGGAGGGAGGGGGGACAGGAATGAGTGAGAG
GTGTAGGCGGTCGATGCGCCCACACTGCTCATTTCCCACTCGTTCCCTTG
AAACCAGCAATTCCCCATATCTTTTCAATCCCCCATCCCTCCTATCCGCC
TCCCGTGTTCAATTTTCTATCCCAAACATACCTTGCGCTCCGAGTCCTGG
TATCCGTTGAAGAACTCCTCGTTGTCCTGCTTGTTGGACCAGCTCGAGAA
GAGGAAGGCAAAGGCGGCGCCGATGGAAGCGATGATAGGCAGGATACGAG
GATCATCCACGCCGAGCACCTTGTGATTGGGAGGAGGAAGAAGGGAACGG
GGGCAGAAGCGAATAAGCATCTCATGCCTGCTGAGGGCAACAGAGCATCG
AATAGTCGCGGCAGTGTCGGTATCCCCCTCTTTCCCCACTCTTCAAAAAG
GACACATACCTCGCCAGTGCCCTCGGTGGCAAAGACGGGGGAGGCAAGGA
TGAGGGGCGTGAGGCCCGCCAGGGCGGACTTTCCGGTCTTGACCACCTCG
GTCATCTTGTTGTTTGTGGCAGACATCTTGATCGCCTGGCGAGTACGGAG
GGGGCCAGTGGGCATGAAGCCCAGGGCGGCCTGCATGCACACCAAGAGGA
TAGCGAGGGAGAAGAAGACCTTCATCTTGACTGGGAGTGGGGTGGTGGGT
GGACTGTGTCATGCGAGGGAAGGAACAGGAAAGGAAGGGAAGGGGCAGGG
GGAAGGGTGAGTTCTTCAATTATTCGAATAATCTGTCGCGGGCAGATTAA
AGACAGCGCTGAGACCCTGGCCACATAGTCCTATTTAAATAAGTTACGAA
TGCATAGCTATCCATGCACTGGCCCTCGCTGGCTCTTTTGAGTGCTTTGG
GTGCACGTGAAGCAAGAAGGGGTTGCAGTAGCCTAGGGCAGGGTTACAGA
TTTGGTCGCATGCCTAGTGAGAAGGCCAATCAAAGCGCCCTCTTGTACGC
CCACACAGTCGTGGCTAGAAAGACAGCGTTTTGGATTTCAGGAGTGAGGT
TTGTGGTGTGTGTATCAAACACAAGACAGGAAGGGATGGGCTTGCCTGGT
GTAGCAATGTCTGGCGAGATATCTGCGAGTTCAATGCATCGGTCCGAGGG
AGGGAAGGAGAATGAGAGTTTGGGCCGCATGTTGGTTGGAAAGGAAGCGT
TTCTGGGTTGCTTCTTAAATTTATTTTAAGGCTGGACTTACGTTTCATGT
CGATGCTAACACAAAAACCATACAGAAAGAAGGTGGACAGCAAGCCATGT
CGACCTGGTCATACTGCAGTCGGCTGCCCCACACAAAAGATTGAGCTTCA
ATTACGTTCTCCTCCCAATCCCAGCTTGGACACGCAACCACAACTACATT
ACCCCCTCCCCCTTGCCCGCCGAGGCCCTGCACGAATGCCTGGTCACAAA
CCACGTATGCTACTACCAGCTTGTCATCGTGTCTCACTTTTGTCCTTCTT
CTCTTTGTCACTGGCATCCTCAGCGGTACCAACGCCACCACTACCGCTGC
CCTGCCCCCTCCTGCCCCTTTCAAAGTTCCTACCCCACGTGGCACCCTGG
TGTACTGCGTGTTCGAGGACTCACGCATTTTTTCGCTCAAGCTGATGACA
AACACCCATTCCTGTTACATTTCTACTAGTTTGGGCCCTGTGCATGTGGT
CCGATGCGCGGGAAAGCTTGGAGCAAGCCTCCCTCCAGTGGTGCTCGTGC
ACGGCGTTTGTTCTACTGGTACGTGAGTGAGAAAAGCAGGCTGAAGGACT
TGAGTCCGTGATAATAGATAGTGTAGCAAGATATTGCTACAGAGCGCGCC
TTGTCTTTTCTACCCCTCTCCCACTTTCAAATCCATCCCCAAACCCGCCC
ACCCACCCACCCACCTACACAATCAATGGCCTTCGAAAATTCTGCAAAGA
TGTAATCGTGCGCGATCTGCCAGGACATGACAAAAGTGGCATCCACGTGG
ACGATCCGATCTTCCGAACCGTTGTCGCGAGTATTGTCGATGTGATATAT
CATACTATCATCACAACTCCTCTTACCACAACTGCCGTACCTTCAACCGC
CGACGATAAAAAAGCAGAGCCACCAGGGTCAAAGACTCTTAGTTCACGCC
CAAAAATCCTCTTGTCAACAATCCCCTTGGTGGGCTCGTTGCCATTCGTG
TCGCCCTCCAGCTCCCTGGCATGATCGCAGCCCTCTGCCTCATCTCCCCA
GCGGGTGCTCCTCTCACCGCCACCGAAATAAGCGAGATTTTTTTGTTTTC
AATGTCAAAATCAACAAGAAGGTCTAGCATTCGTTGATGGGATATGCGGT
TTTCCTGAACGGCGGCCGAGAACCTTTAGAGCGATCATAAGCTGGGCATG
TCGGATGCTAATGAGTAGTGGGTCAATCCATGTGATAAAGAACAAAGCAC
AGCCCCCGCTCATGCTCAGTAAGAAGGACTTGAAAGGTTTAAATTATACC
CCCATATTGTTTGTCTGGGGAAAGCATGAGAAG

Coding sequence (CDS) from alignment at scaffold_14:265090..268372+

>mRNA_5994 ID=mRNA_5994|Name=jgi.p|Nanoce1779_2|671675|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_14:265090..268372+ (Nannochloropsis oceanica)
ATGACAAACACCCATTCCTGTTACATTTCTACTAGTTTGGGCCCTGTGCA
TGTGGTCCGATGCGCGGGAAAGCTTGGAGCAAGCCTCCCTCCAGTGGTGC
TCGTGCACGGCGTTTGTTCTACTGATGTAATCGTGCGCGATCTGCCAGGA
CATGACAAAAGTGGCATCCACGTGGACGATCCGATCTTCCGAACCGTTGT
CGCGAGTATTGTCGATGTGATATATCATACTATCATCACAACTCCTCTTA
CCACAACTGCCGTACCTTCAACCGCCGACGATAAAAAAGCAGAGCCACCA
GGGTCAAAGACTCTTAGTTCACGCCCAAAAATCCTCTTGTCAACAATCCC
CTTGGTGGGCTCGTTGCCATTCGTGTCGCCCTCCAGCTCCCTGGCATGAA
TGACAAACACCCATTCCTGTTACATTTCTACTAGTTTGGGCCCTGTGCAT
GTGGTCCGATGCGCGGGAAAGCTTGGAGCAAGCCTCCCTCCAGTGGTGCT
CGTGCACGGCGTTTGTTCTACTGATGTAATCGTGCGCGATCTGCCAGGAC
ATGACAAAAGTGGCATCCACGTGGACGATCCGATCTTCCGAACCGTTGTC
GCGAGTATTGTCGATGTGATATATCATACTATCATCACAACTCCTCTTAC
CACAACTGCCGTACCTTCAACCGCCGACGATAAAAAAGCAGAGCCACCAG
GGTCAAAGACTCTTAGTTCACGCCCAAAAATCCTCTTGTCAACAATCCCC
TTGGTGGGCTCGTTGCCATTCGTGTCGCCCTCCAGCTCCCTGGCATGA

Synonyms

Publications