jgi.p|Nanoce1779_2|78439, mRNA_5993 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|78439
Unique NamemRNA_5993
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length834
Alignment locationscaffold_14:265813..266977 -

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Properties
Property NameValue
TranscriptId78525
TrackFilteredModels2
ProteinId78439
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:265813..266977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78439gene_5993Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78439mRNA_5993-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5993CDS_5993Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5993 ID=mRNA_5993|Name=jgi.p|Nanoce1779_2|78439|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
TGCATTGAACTCGCAGATATCTCGCCAGACATTGCTACACCAGGCAAGCC
CATCCCTTCCTGTCTTGTGTTTGATACACACACCACAAACCTCACTCCTG
AAATCCAAAACGCTGTCTTTCTAGCCACGACTGTGTGGGCGTACAAGAGG
GCGCTTTGATTGGCCTTCTCACTAGGCATGCGACCAAATCTGTAACCCTG
CCCTAGGCTACTGCAACCCCTTCTTGCTTCACGTGCACCCAAAGCACTCA
AAAGAGCCAGCGAGGGCCAGTGCATGGATAGCTATGCATTCGTAACTTAT
TTAAATAGGACTATGTGGCCAGGGTCTCAGCGCTGTCTTTAATCTGCCCG
CGACAGATTATTCGAATAATTGAAGAACTCACCCTTCCCCCTGCCCCTTC
CCTTCCTTTCCTGTTCCTTCCCTCGCATGACACAGTCCACCCACCACCCC
ACTCCCAGTCAAGATGAAGGTCTTCTTCTCCCTCGCTATCCTCTTGGTGT
GCATGCAGGCCGCCCTGGGCTTCATGCCCACTGGCCCCCTCCGTACTCGC
CAGGCGATCAAGATGTCTGCCACAAACAACAAGATGACCGAGGTGGTCAA
GACCGGAAAGTCCGCCCTGGCGGGCCTCACGCCCCTCATCCTTGCCTCCC
CCGTCTTTGCCACCGAGGGCACTGGCGAGGTGCTCGGCGTGGATGATCCT
CGTATCCTGCCTATCATCGCTTCCATCGGCGCCGCCTTTGCCTTCCTCTT
CTCGAGCTGGTCCAACAAGCAGGACAACGAGGAGTTCTTCAACGGATACC
AGGACTCGGAGCGCAAGTAAATGGTCCGTTAGCA
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protein sequence of jgi.p|Nanoce1779_2|78439

>mRNA_5993-protein ID=mRNA_5993-protein|Name=jgi.p|Nanoce1779_2|78439|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKVFFSLAILLVCMQAALGFMPTGPLRTRQAIKMSATNNKMTEVVKTGKS
ALAGLTPLILASPVFATEGTGEVLGVDDPRILPIIASIGAAFAFLFSSWS
NKQDNEEFFNGYQDSERK*
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mRNA from alignment at scaffold_14:265813..266977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5993 ID=mRNA_5993|Name=jgi.p|Nanoce1779_2|78439|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at scaffold_14:265813..266977- (Nannochloropsis oceanica)
TGCATTGAACTCGCAGATATCTCGCCAGACATTGCTACACCAGGCAAGCC
CATCCCTTCCTGTCTTGTGTTTGATACACACACCACAAACCTCACTCCTG
AAATCCAAAACGCTGTCTTTCTAGCCACGACTGTGTGGGCGTACAAGAGG
GCGCTTTGATTGGCCTTCTCACTAGGCATGCGACCAAATCTGTAACCCTG
CCCTAGGCTACTGCAACCCCTTCTTGCTTCACGTGCACCCAAAGCACTCA
AAAGAGCCAGCGAGGGCCAGTGCATGGATAGCTATGCATTCGTAACTTAT
TTAAATAGGACTATGTGGCCAGGGTCTCAGCGCTGTCTTTAATCTGCCCG
CGACAGATTATTCGAATAATTGAAGAACTCACCCTTCCCCCTGCCCCTTC
CCTTCCTTTCCTGTTCCTTCCCTCGCATGACACAGTCCACCCACCACCCC
ACTCCCAGTCAAGATGAAGGTCTTCTTCTCCCTCGCTATCCTCTTGGTGT
GCATGCAGGCCGCCCTGGGCTTCATGCCCACTGGCCCCCTCCGTACTCGC
CAGGCGATCAAGATGTCTGCCACAAACAACAAGATGACCGAGGTGGTCAA
GACCGGAAAGTCCGCCCTGGCGGGCCTCACGCCCCTCATCCTTGCCTCCC
CCGTCTTTGCCACCGAGGGCACTGGCGAGGTATGTGTCCTTTTTGAAGAG
TGGGGAAAGAGGGGGATACCGACACTGCCGCGACTATTCGATGCTCTGTT
GCCCTCAGCAGGCATGAGATGCTTATTCGCTTCTGCCCCCGTTCCCTTCT
TCCTCCTCCCAATCACAAGGTGCTCGGCGTGGATGATCCTCGTATCCTGC
CTATCATCGCTTCCATCGGCGCCGCCTTTGCCTTCCTCTTCTCGAGCTGG
TCCAACAAGCAGGACAACGAGGAGTTCTTCAACGGATACCAGGACTCGGA
GCGCAAGGTATGTTTGGGATAGAAAATTGAACACGGGAGGCGGATAGGAG
GGATGGGGGATTGAAAAGATATGGGGAATTGCTGGTTTCAAGGGAACGAG
TGGGAAATGAGCAGTGTGGGCGCATCGACCGCCTACACCTCTCACTCATT
CCTGTCCCCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCATGACAGTA
AATGGTCCGTTAGCA
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Coding sequence (CDS) from alignment at scaffold_14:265813..266977-

>mRNA_5993 ID=mRNA_5993|Name=jgi.p|Nanoce1779_2|78439|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_14:265813..266977- (Nannochloropsis oceanica)
TAAGTGCTCGGCGTGGATGATCCTCGTATCCTGCCTATCATCGCTTCCAT
CGGCGCCGCCTTTGCCTTCCTCTTCTCGAGCTGGTCCAACAAGCAGGACA
ACGAGGAGTTCTTCAACGGATACCAGGACTCGGAGCGCAAGATGAAGGTC
TTCTTCTCCCTCGCTATCCTCTTGGTGTGCATGCAGGCCGCCCTGGGCTT
CATGCCCACTGGCCCCCTCCGTACTCGCCAGGCGATCAAGATGTCTGCCA
CAAACAACAAGATGACCGAGGTGGTCAAGACCGGAAAGTCCGCCCTGGCG
GGCCTCACGCCCCTCATCCTTGCCTCCCCCGTCTTTGCCACCGAGGGCAC
TGGCGAGTAAGTGCTCGGCGTGGATGATCCTCGTATCCTGCCTATCATCG
CTTCCATCGGCGCCGCCTTTGCCTTCCTCTTCTCGAGCTGGTCCAACAAG
CAGGACAACGAGGAGTTCTTCAACGGATACCAGGACTCGGAGCGCAAGAT
GAAGGTCTTCTTCTCCCTCGCTATCCTCTTGGTGTGCATGCAGGCCGCCC
TGGGCTTCATGCCCACTGGCCCCCTCCGTACTCGCCAGGCGATCAAGATG
TCTGCCACAAACAACAAGATGACCGAGGTGGTCAAGACCGGAAAGTCCGC
CCTGGCGGGCCTCACGCCCCTCATCCTTGCCTCCCCCGTCTTTGCCACCG
AGGGCACTGGCGAGTAAGTGCTCGGCGTGGATGATCCTCGTATCCTGCCT
ATCATCGCTTCCATCGGCGCCGCCTTTGCCTTCCTCTTCTCGAGCTGGTC
CAACAAGCAGGACAACGAGGAGTTCTTCAACGGATACCAGGACTCGGAGC
GCAAGATGAAGGTCTTCTTCTCCCTCGCTATCCTCTTGGTGTGCATGCAG
GCCGCCCTGGGCTTCATGCCCACTGGCCCCCTCCGTACTCGCCAGGCGAT
CAAGATGTCTGCCACAAACAACAAGATGACCGAGGTGGTCAAGACCGGAA
AGTCCGCCCTGGCGGGCCTCACGCCCCTCATCCTTGCCTCCCCCGTCTTT
GCCACCGAGGGCACTGGCGAG
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Synonyms
Publications