jgi.p|Nanoce1779_2|593422, mRNA_5992 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593422
Unique NamemRNA_5992
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1134
Alignment locationscaffold_14:265082..266546 +

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Properties
Property NameValue
TranscriptId593508
TrackFilteredModels2
ProteinId593422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:265082..266546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593422gene_5992Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593422mRNA_5992-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5992CDS_5992Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5992 ID=mRNA_5992|Name=jgi.p|Nanoce1779_2|593422|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
AAAGAAGGAAAAAAAAAAAAAAAAAAAGGGAGAGAGAGAGAGAGGCGAAG
ACGGGAGAGACGAAAAGAAAAATGATGTCTGAGTAGAGGATTGAAGGCAG
CCTAGGCAGAGCATTAATGAAGATTAAACCAAGATTGACACAAAGGAATA
ACAAGATAACAAGAGTTATGTTCATGCCAAGCAGAGCGGACGTATCCTAC
ATTCACCATCGTTCGTTTAAAACCGAGAATTTGACCGTACCATTAAAATA
AGGGCACAAAACATAACACCAAGTGTGAAGTGCACACAACACTCACATAC
ACACAAACGGAAAGCATAGCGAGAGAGGAAAGACAAAATGGGAGCATTGC
TGTTGTTGCGGTGTTGGTGTTCTCTTTCTATATCAGAGCCCTTCGGATAC
CTCATTACGACAGCCCTTCCTCGCCCTGGCACGACCACTACAGCTCCAAC
CAGCACCCACAGACGAGACCGATCGAGACAACAAGACGAGAAATTAAAAA
TAAAACCAATCCTCTTTCTCCCTTCCCTCCTCTGTCCCCGTCATTTCTTC
TTGCTGGCGTGGGGGGGAGAAATTGGCCCGTATCATAGCAAGCGAAATCA
GACACTCTGTCTCAAGACTTGCCTCGACTCTCATCACACGGCCTGCTTTC
TTTTTTGTTTCCTCTTTTACTGTATCATCTCCCCTGGTTGCGTGATTGGA
TTGTGGTGGTGGCGGTGATGTCGAAATAGCCTGCTAACGGACCATTTACT
TGCGCTCCGAGTCCTGGTATCCGTTGAAGAACTCCTCGTTGTCCTGCTTG
TTGGACCAGCTCGAGAAGAGGAAGGCAAAGGCGGCGCCGATGGAAGCGAT
GATAGGCAGGATACGAGGATCATCCACGCCGAGCACCTCGCCAGTGCCCT
CGGTGGCAAAGACGGGGGAGGCAAGGATGAGGGGCGTGAGGCCCGCCAGG
GCGGACTTTCCGGTCTTGACCACCTCGGTCATCTTGTTGTTTGTGGCAGA
CATCTTGATCGCCTGGCGAGTACGGAGGGGGCCAGTGGGCATGAAGCCCA
GGGCGGCCTGCATGCACACCAAGAGGATAGCGAGGGAGAAGAAGACCTTC
ATCTTGACTGGGAGTGGGGTGGTGGGTGGACTGT
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protein sequence of jgi.p|Nanoce1779_2|593422

>mRNA_5992-protein ID=mRNA_5992-protein|Name=jgi.p|Nanoce1779_2|593422|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MGALLLLRCWCSLSISEPFGYLITTALPRPGTTTTAPTSTHRRDRSRQQD
EKLKIKPILFLPSLLCPRHFFLLAWGGEIGPYHSKRNQTLCLKTCLDSHH
TACFLFCFLFYCIISPGCVIGLWWWR*
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mRNA from alignment at scaffold_14:265082..266546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5992 ID=mRNA_5992|Name=jgi.p|Nanoce1779_2|593422|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp|location=Sequence derived from alignment at scaffold_14:265082..266546+ (Nannochloropsis oceanica)
AAAGAAGGAAAAAAAAAAAAAAAAAAAGGGAGAGAGAGAGAGAGGCGAAG ACGGGAGAGACGAAAAGAAAAATGATGTCTGAGTAGAGGATTGAAGGCAG CCTAGGCAGAGCATTAATGAAGATTAAACCAAGATTGACACAAAGGAATA ACAAGATAACAAGAGTTATGTTCATGCCAAGCAGAGCGGACGTATCCTAC ATTCACCATCGTTCGTTTAAAACCGAGAATTTGACCGTACCATTAAAATA AGGGCACAAAACATAACACCAAGTGTGAAGTGCACACAACACTCACATAC ACACAAACGGAAAGCATAGCGAGAGAGGAAAGACAAAATGGGAGCATTGC TGTTGTTGCGGTGTTGGTGTTCTCTTTCTATATCAGAGCCCTTCGGATAC CTCATTACGACAGCCCTTCCTCGCCCTGGCACGACCACTACAGCTCCAAC CAGCACCCACAGACGAGACCGATCGAGACAACAAGACGAGAAATTAAAAA TAAAACCAATCCTCTTTCTCCCTTCCCTCCTCTGTCCCCGTCATTTCTTC TTGCTGGCGTGGGGGGGAGAAATTGGCCCGTATCATAGCAAGCGAAATCA GACACTCTGTCTCAAGACTTGCCTCGACTCTCATCACACGGCCTGCTTTC TTTTTTGTTTCCTCTTTTACTGTATCATCTCCCCTGGTTGCGTGATTGGA TTGTGGTGGTGGCGGTGATGTCGAAATAGCCTGCTAACGGACCATTTACT GTCATGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGGGGACAGGAATG AGTGAGAGGTGTAGGCGGTCGATGCGCCCACACTGCTCATTTCCCACTCG TTCCCTTGAAACCAGCAATTCCCCATATCTTTTCAATCCCCCATCCCTCC TATCCGCCTCCCGTGTTCAATTTTCTATCCCAAACATACCTTGCGCTCCG AGTCCTGGTATCCGTTGAAGAACTCCTCGTTGTCCTGCTTGTTGGACCAG CTCGAGAAGAGGAAGGCAAAGGCGGCGCCGATGGAAGCGATGATAGGCAG GATACGAGGATCATCCACGCCGAGCACCTTGTGATTGGGAGGAGGAAGAA GGGAACGGGGGCAGAAGCGAATAAGCATCTCATGCCTGCTGAGGGCAACA GAGCATCGAATAGTCGCGGCAGTGTCGGTATCCCCCTCTTTCCCCACTCT TCAAAAAGGACACATACCTCGCCAGTGCCCTCGGTGGCAAAGACGGGGGA GGCAAGGATGAGGGGCGTGAGGCCCGCCAGGGCGGACTTTCCGGTCTTGA CCACCTCGGTCATCTTGTTGTTTGTGGCAGACATCTTGATCGCCTGGCGA GTACGGAGGGGGCCAGTGGGCATGAAGCCCAGGGCGGCCTGCATGCACAC CAAGAGGATAGCGAGGGAGAAGAAGACCTTCATCTTGACTGGGAGTGGGG TGGTGGGTGGACTGT
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Coding sequence (CDS) from alignment at scaffold_14:265082..266546+

>mRNA_5992 ID=mRNA_5992|Name=jgi.p|Nanoce1779_2|593422|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_14:265082..266546+ (Nannochloropsis oceanica)
ATGGGAGCATTGCTGTTGTTGCGGTGTTGGTGTTCTCTTTCTATATCAGA
GCCCTTCGGATACCTCATTACGACAGCCCTTCCTCGCCCTGGCACGACCA
CTACAGCTCCAACCAGCACCCACAGACGAGACCGATCGAGACAACAAGAC
GAGAAATTAAAAATAAAACCAATCCTCTTTCTCCCTTCCCTCCTCTGTCC
CCGTCATTTCTTCTTGCTGGCGTGGGGGGGAGAAATTGGCCCGTATCATA
GCAAGCGAAATCAGACACTCTGTCTCAAGACTTGCCTCGACTCTCATCAC
ACGGCCTGCTTTCTTTTTTGTTTCCTCTTTTACTGTATCATCTCCCCTGG
TTGCGTGATTGGATTGTGGTGGTGGCGGTGA
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Synonyms
Publications