jgi.p|Nanoce1779_2|631237, mRNA_5991 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631237
Unique NamemRNA_5991
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1153
Alignment locationscaffold_14:263724..265055 +

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Properties
Property NameValue
TranscriptId631323
TrackFilteredModels2
ProteinId631237
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:263724..265055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631237gene_5991Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631237mRNA_5991-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5991CDS_5991Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5991 ID=mRNA_5991|Name=jgi.p|Nanoce1779_2|631237|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp
CGCGACGGGAAGAGACTTGGAAGGGGGAGATGACGATGAGGAAGATGACA
ATGTCCGACGGATGACCAAGCAATTTGCCTGGGAGGAGGAGAGGATGGAG
GAGGATTTCAATGAGGCCGGGGATAAAATGGAGCCTTTCAATTTGAAGAC
AGAGCGGACGGAAGGCTACTTTGATGAGACGGGCCATTTCGTCTGGAAGA
AGGAGGAGGGTGGGGAAGACCCTTGGTTGGCCTCGTTGGAGAATGAGGAG
GATTTGGAGGCACGCATTGGGGAGGCAGCGGTGGCGCGGAAGAAGAAAGA
TGATGAAGAGGATGGGGTGGAAGAACCTCCTGAGGTCGTTGACAAGGTCT
TGCTCCAAGACAAACTTCTCCGACTCATGCGTCCTGGCGAGACGGTCCTT
CGTGCCCTCAAGCGCCTTGGGCCTGGGGGAGGTGCAGCCGCAGCAGCAGC
AAAAACAGCGGCAACAGCAGCAAAAGCAGCTGGAGGGCCACCGAAAGGAG
GGAAAGCAACCGTAGTAAAGCGGAGGGATGAGCGCACGGAGGAGGAGAAG
CGGCAGTTTGACTTGGTGACGGAACTTGCAGATTCGTTACTGAGGGCCGG
GGTGGTGGACGTTTACGACAAGCAATACGAAGTGATGAAAACCCACCTCA
TGGAGGACGAGGAGGAGGATGCTCGACGAGCAGCAGCAGCAGCAGGAAGA
GCAGGCGCTGGAGCAGGAATAAGTGAAAGAAAAAAACGGCCAGCATCTGG
CATCAGTTTTGCGGTTGCTGAACGAGGAGGGGGGAGGGGGGCGATGTGGG
AGTACAAGGGTCCTGATGGTCTTGTGCACGGGCCGTATTCTACACAGGAG
ATAGGGAAATGGCGGTCCCAAGGCTTCTTCACGGGGGGTACGGCGGTGGA
AATGAGGAGAGTTGAGGGGAAAGGAGAGAGGAGGAAGGAGGGAGGAGGAG
AGGGGGAAGGGGAGGGAGGGGAGAAGCGGAAAAAGGTGACGTTCAGTGCG
GAAAGTCTGGCGGCGGATTTTGGGGAGGACGAGGAGGAAGTGGTGGAGGG
GATGGACGACGGGGGAGAGGGGAAGGGCGGGAGGAAGAAAGGGGAGGATG
AGGAGGGAGAGTGGGTGAACTCGGATGCGATTGATTGGGCAGAAGAAACG
TAG
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protein sequence of jgi.p|Nanoce1779_2|631237

>mRNA_5991-protein ID=mRNA_5991-protein|Name=jgi.p|Nanoce1779_2|631237|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MTKQFAWEEERMEEDFNEAGDKMEPFNLKTERTEGYFDETGHFVWKKEEG
GEDPWLASLENEEDLEARIGEAAVARKKKDDEEDGVEEPPEVVDKVLLQD
KLLRLMRPGETVLRALKRLGPGGGAAAAAAKTAATAAKAAGGPPKGGKAT
VVKRRDERTEEEKRQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDE
EEDARRAAAAAGRAGAGAGISERKKRPASGISFAVAERGGGRGAMWEYKG
PDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRVEGKGERRKEGGGEGEG
EGGEKRKKVTFSAESLAADFGEDEEEVVEGMDDGGEGKGGRKKGEDEEGE
WVNSDAIDWAEET*
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mRNA from alignment at scaffold_14:263724..265055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5991 ID=mRNA_5991|Name=jgi.p|Nanoce1779_2|631237|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp|location=Sequence derived from alignment at scaffold_14:263724..265055+ (Nannochloropsis oceanica)
CGCGACGGGAAGAGACTTGGAAGGGGGAGATGACGATGAGGAAGATGACA
ATGTCCGACGGATGACCAAGCAATTTGCCTGGGAGGAGGAGAGGATGGAG
GAGGATTTCAATGAGGCCGGGGATAAAATGGAGCCTTTCAATTTGAAGAC
AGAGCGGACGGAAGGCTACTTTGATGAGACGGGCCATTTCGTCTGGAAGA
AGGAGGAGGGTGGGGAAGACCCTTGGTTGGCCTCGTTGGAGAATGAGGAG
GATTTGGAGGCACGCATTGGGGAGGCAGCGGTGGCGCGGAAGAAGAAGTG
CGTTTGGGGAGAAATGGAGGGAAGCAGGGGGATGTGGTTCGCGTGGTGGC
TCTGGGTTTCGTCCGTCTTCAGACGTTCTCTTCTCCCCTCCTTCATGCAC
GTTTGCGTCTCCTTTGTAGCATTAACTCACACCTTTCTCACTCCCTCCCC
TCCCTCCCCCTTCCATGTCAAAACAGAGATGATGAAGAGGATGGGGTGGA
AGAACCTCCTGAGGTCGTTGACAAGGTCTTGCTCCAAGACAAACTTCTCC
GACTCATGCGTCCTGGCGAGACGGTCCTTCGTGCCCTCAAGCGCCTTGGG
CCTGGGGGAGGTGCAGCCGCAGCAGCAGCAAAAACAGCGGCAACAGCAGC
AAAAGCAGCTGGAGGGCCACCGAAAGGAGGGAAAGCAACCGTAGTAAAGC
GGAGGGATGAGCGCACGGAGGAGGAGAAGCGGCAGTTTGACTTGGTGACG
GAACTTGCAGATTCGTTACTGAGGGCCGGGGTGGTGGACGTTTACGACAA
GCAATACGAAGTGATGAAAACCCACCTCATGGAGGACGAGGAGGAGGATG
CTCGACGAGCAGCAGCAGCAGCAGGAAGAGCAGGCGCTGGAGCAGGAATA
AGTGAAAGAAAAAAACGGCCAGCATCTGGCATCAGTTTTGCGGTTGCTGA
ACGAGGAGGGGGGAGGGGGGCGATGTGGGAGTACAAGGGTCCTGATGGTC
TTGTGCACGGGCCGTATTCTACACAGGAGATAGGGAAATGGCGGTCCCAA
GGCTTCTTCACGGGGGGTACGGCGGTGGAAATGAGGAGAGTTGAGGGGAA
AGGAGAGAGGAGGAAGGAGGGAGGAGGAGAGGGGGAAGGGGAGGGAGGGG
AGAAGCGGAAAAAGGTGACGTTCAGTGCGGAAAGTCTGGCGGCGGATTTT
GGGGAGGACGAGGAGGAAGTGGTGGAGGGGATGGACGACGGGGGAGAGGG
GAAGGGCGGGAGGAAGAAAGGGGAGGATGAGGAGGGAGAGTGGGTGAACT
CGGATGCGATTGATTGGGCAGAAGAAACGTAG
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Coding sequence (CDS) from alignment at scaffold_14:263724..265055+

>mRNA_5991 ID=mRNA_5991|Name=jgi.p|Nanoce1779_2|631237|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_14:263724..265055+ (Nannochloropsis oceanica)
ATGACCAAGCAATTTGCCTGGGAGGAGGAGAGGATGGAGGAGGATTTCAA
TGAGGCCGGGGATAAAATGGAGCCTTTCAATTTGAAGACAGAGCGGACGG
AAGGCTACTTTGATGAGACGGGCCATTTCGTCTGGAAGAAGGAGGAGGGT
GGGGAAGACCCTTGGTTGGCCTCGTTGGAGAATGAGGAGGATTTGGAGGC
ACGCATTGGGGAGGCAGCGGTGGCGCGGAAGAAGAAAGATGATGAAGAGG
ATGGGGTGGAAGAACCTCCTGAGGTCGTTGACAAGGTCTTGCTCCAAGAC
AAACTTCTCCGACTCATGCGTCCTGGCGAGACGGTCCTTCGTGCCCTCAA
GCGCCTTGGGCCTGGGGGAGGTGCAGCCGCAGCAGCAGCAAAAACAGCGG
CAACAGCAGCAAAAGCAGCTGGAGGGCCACCGAAAGGAGGGAAAGCAACC
GTAGTAAAGCGGAGGGATGAGCGCACGGAGGAGGAGAAGCGGCAGTTTGA
CTTGGTGACGGAACTTGCAGATTCGTTACTGAGGGCCGGGGTGGTGGACG
TTTACGACAAGCAATACGAAGTGATGAAAACCCACCTCATGGAGGACGAG
GAGGAGGATGCTCGACGAGCAGCAGCAGCAGCAGGAAGAGCAGGCGCTGG
AGCAGGAATAAGTGAAAGAAAAAAACGGCCAGCATCTGGCATCAGTTTTG
CGGTTGCTGAACGAGGAGGGGGGAGGGGGGCGATGTGGGAGTACAAGGGT
CCTGATGGTCTTGTGCACGGGCCGTATTCTACACAGGAGATAGGGAAATG
GCGGTCCCAAGGCTTCTTCACGGGGGGTACGGCGGTGGAAATGAGGAGAG
TTGAGGGGAAAGGAGAGAGGAGGAAGGAGGGAGGAGGAGAGGGGGAAGGG
GAGGGAGGGGAGAAGCGGAAAAAGGTGACGTTCAGTGCGGAAAGTCTGGC
GGCGGATTTTGGGGAGGACGAGGAGGAAGTGGTGGAGGGGATGGACGACG
GGGGAGAGGGGAAGGGCGGGAGGAAGAAAGGGGAGGATGAGGAGGGAGAG
TGGGTGAACTCGGATGCGATTGATTGGGCAGAAGAAACGTAGATGACCAA
GCAATTTGCCTGGGAGGAGGAGAGGATGGAGGAGGATTTCAATGAGGCCG
GGGATAAAATGGAGCCTTTCAATTTGAAGACAGAGCGGACGGAAGGCTAC
TTTGATGAGACGGGCCATTTCGTCTGGAAGAAGGAGGAGGGTGGGGAAGA
CCCTTGGTTGGCCTCGTTGGAGAATGAGGAGGATTTGGAGGCACGCATTG
GGGAGGCAGCGGTGGCGCGGAAGAAGAAAGATGATGAAGAGGATGGGGTG
GAAGAACCTCCTGAGGTCGTTGACAAGGTCTTGCTCCAAGACAAACTTCT
CCGACTCATGCGTCCTGGCGAGACGGTCCTTCGTGCCCTCAAGCGCCTTG
GGCCTGGGGGAGGTGCAGCCGCAGCAGCAGCAAAAACAGCGGCAACAGCA
GCAAAAGCAGCTGGAGGGCCACCGAAAGGAGGGAAAGCAACCGTAGTAAA
GCGGAGGGATGAGCGCACGGAGGAGGAGAAGCGGCAGTTTGACTTGGTGA
CGGAACTTGCAGATTCGTTACTGAGGGCCGGGGTGGTGGACGTTTACGAC
AAGCAATACGAAGTGATGAAAACCCACCTCATGGAGGACGAGGAGGAGGA
TGCTCGACGAGCAGCAGCAGCAGCAGGAAGAGCAGGCGCTGGAGCAGGAA
TAAGTGAAAGAAAAAAACGGCCAGCATCTGGCATCAGTTTTGCGGTTGCT
GAACGAGGAGGGGGGAGGGGGGCGATGTGGGAGTACAAGGGTCCTGATGG
TCTTGTGCACGGGCCGTATTCTACACAGGAGATAGGGAAATGGCGGTCCC
AAGGCTTCTTCACGGGGGGTACGGCGGTGGAAATGAGGAGAGTTGAGGGG
AAAGGAGAGAGGAGGAAGGAGGGAGGAGGAGAGGGGGAAGGGGAGGGAGG
GGAGAAGCGGAAAAAGGTGACGTTCAGTGCGGAAAGTCTGGCGGCGGATT
TTGGGGAGGACGAGGAGGAAGTGGTGGAGGGGATGGACGACGGGGGAGAG
GGGAAGGGCGGGAGGAAGAAAGGGGAGGATGAGGAGGGAGAGTGGGTGAA
CTCGGATGCGATTGATTGGGCAGAAGAAACGTAG
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Synonyms
Publications