jgi.p|Nanoce1779_2|593414, mRNA_5990 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593414
Unique NamemRNA_5990
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length572
Alignment locationscaffold_14:260587..261625 -

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Properties
Property NameValue
TranscriptId593500
TrackFilteredModels2
ProteinId593414
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:260587..261625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593414gene_5990Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593414mRNA_5990-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5990CDS_5990Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5990 ID=mRNA_5990|Name=jgi.p|Nanoce1779_2|593414|organism=Nannochloropsis oceanica|type=mRNA|length=572bp
ACAGCATCGTCATGGCCTTTGTGCGCACGGCAGCCCGCCAGATGGGGCAT
GGCCTGGAGCGCGTGGACGTGAGTCTCTCCATGCGAAAGTGGTGGAAGCT
TGGCTACACCCGTCAGAACGGCCTGATCACCAAGACGCTGTCGCCCTTCG
AACAGCGCATTATCACGCCCATGCTGGACGATGCCCCTACCAAGATCCTT
AAGTACCTAAAGCGTTGGTCCACTACCATCTTGCCGGCCTTTGTTATCAC
TTACTCTACTGTCAAGTGGGCTGACTGGGAGTTCGACCAAATCCATCGCG
AGCACTGGGATTAAGCAAGGAAACAAACGAATGAGGGAGGAAGGGAGCAA
GAGAATGGATTGGATAGGGTCTTGTTCGATTAGAGAGGGGACGACGGAGA
GAGCTCGATTGAGTGAGTATGCATGAACGTCCTTCACTATTGTTGGTTGT
GGTGCAATAGATAGACGGGAATCACGCCCTCGTTTCTGGGAGGGCTGGCT
ACGAATAGACGGGAAACCGTTCGTGGACGAAGCTCACGCACAAGAAAGAA
AATGAAAGAGCTCTTCTTTTTA
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protein sequence of jgi.p|Nanoce1779_2|593414

>mRNA_5990-protein ID=mRNA_5990-protein|Name=jgi.p|Nanoce1779_2|593414|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MAFVRTAARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKTLSPFEQRI
ITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD
*
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mRNA from alignment at scaffold_14:260587..261625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5990 ID=mRNA_5990|Name=jgi.p|Nanoce1779_2|593414|organism=Nannochloropsis oceanica|type=mRNA|length=1039bp|location=Sequence derived from alignment at scaffold_14:260587..261625- (Nannochloropsis oceanica)
ACAGCATCGTCATGGCCTTTGTGCGCACGGCAGCCCGCCAGATGGGGCAT
GGCCTGGAGCGCGTGGACGTGAGTCTCTCCATGCGAAAGTGGTGGAAGCT
TGGCTACACCCGTCAGAACGGCCTGGTACGTAAAAATTTATCTAACATGC
GGAGACATGTGGGATGGGGAAGCGAAAGGAATGGAGGGAAGATTGTGGCA
TCGTCTCTACTGTCCCTGTTCCGAATTGCTATTCGGGGTGGGGGCGGGCA
GGTGGGCAAGTGTGGTGGCATAGGTGATGTTTTTGCTATTTGGAACGTTG
CTTTCCAGTATGAGCACGCTGATCCCTGATTACACCGCTTGAACGGCTGT
CTTAATTCCACCCTTGAGCTGTCATCTATTTAGCATGTCGCGATTTTATC
AATCATTCTTCATCCTCTCCTCTTTCCTCTCATCTCCACCTCTGAAAAAC
CAGATCACCAAGACGCTGTCGCCCTTCGAACAGCGCATTATCACGCCCAT
GCTGGACGATGCCCCTACCAAGGTGAGTCTTATCAAATCAACCTCCTCGT
TGTACTCTTCCTCCCTTCACTATTTCATGCGTACGAAAAGAGGCCCGCGT
CCGCTCGTCTTGCGCTCATTCCCTTGCCCTCTCTCCCTCGCTTTTTCTGC
TTCCCTCGCAGATCCTTAAGTACCTAAAGCGTTGGTCCACTACCATCTTG
CCGGCCTTTGTTATCACTTACTCTACTGTCAAGTGGGCTGACTGGGAGTT
CGACCAAATCCATCGCGAGCACTGGGATTAAGCAAGGAAACAAACGAATG
AGGGAGGAAGGGAGCAAGAGAATGGATTGGATAGGGTCTTGTTCGATTAG
AGAGGGGACGACGGAGAGAGCTCGATTGAGTGAGTATGCATGAACGTCCT
TCACTATTGTTGGTTGTGGTGCAATAGATAGACGGGAATCACGCCCTCGT
TTCTGGGAGGGCTGGCTACGAATAGACGGGAAACCGTTCGTGGACGAAGC
TCACGCACAAGAAAGAAAATGAAAGAGCTCTTCTTTTTA
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Coding sequence (CDS) from alignment at scaffold_14:260587..261625-

>mRNA_5990 ID=mRNA_5990|Name=jgi.p|Nanoce1779_2|593414|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_14:260587..261625- (Nannochloropsis oceanica)
ATCCTTAAGTACCTAAAGCGTTGGTCCACTACCATCTTGCCGGCCTTTGT
TATCACTTACTCTACTGTCAAGTGGGCTGACTGGGAGTTCGACCAAATCC
ATCGCGAGCACTGGGATTAAATCACCAAGACGCTGTCGCCCTTCGAACAG
CGCATTATCACGCCCATGCTGGACGATGCCCCTACCAAGATGGCCTTTGT
GCGCACGGCAGCCCGCCAGATGGGGCATGGCCTGGAGCGCGTGGACGTGA
GTCTCTCCATGCGAAAGTGGTGGAAGCTTGGCTACACCCGTCAGAACGGC
CTGATCCTTAAGTACCTAAAGCGTTGGTCCACTACCATCTTGCCGGCCTT
TGTTATCACTTACTCTACTGTCAAGTGGGCTGACTGGGAGTTCGACCAAA
TCCATCGCGAGCACTGGGATTAAATCACCAAGACGCTGTCGCCCTTCGAA
CAGCGCATTATCACGCCCATGCTGGACGATGCCCCTACCAAGATGGCCTT
TGTGCGCACGGCAGCCCGCCAGATGGGGCATGGCCTGGAGCGCGTGGACG
TGAGTCTCTCCATGCGAAAGTGGTGGAAGCTTGGCTACACCCGTCAGAAC
GGCCTGATCCTTAAGTACCTAAAGCGTTGGTCCACTACCATCTTGCCGGC
CTTTGTTATCACTTACTCTACTGTCAAGTGGGCTGACTGGGAGTTCGACC
AAATCCATCGCGAGCACTGGGATTAAATCACCAAGACGCTGTCGCCCTTC
GAACAGCGCATTATCACGCCCATGCTGGACGATGCCCCTACCAAGATGGC
CTTTGTGCGCACGGCAGCCCGCCAGATGGGGCATGGCCTGGAGCGCGTGG
ACGTGAGTCTCTCCATGCGAAAGTGGTGGAAGCTTGGCTACACCCGTCAG
AACGGCCTG
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Synonyms
Publications