jgi.p|Nanoce1779_2|658239, mRNA_599 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|658239
Unique Name	mRNA_599
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1865
Alignment location	scaffold_3:1497606..1499470 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	658325
Track	FilteredModels2
ProteinId	658239

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1497606..1499470 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|658239	gene_599	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|658239	mRNA_599-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_599	CDS_599	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1497606..1499470+
coding sequence from alignment at scaffold_3:1497606..1499470+

mRNA sequence

>mRNA_599 ID=mRNA_599|Name=jgi.p|Nanoce1779_2|658239|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp
CCTCTCGTGCCTCACCACTCACAACAGCAAGTCTCAAACGTACCGCACAT
GCATACACAGCACAGCGGGCTGGCCTTCTTCGGGCCAGCACTGGGATAAT
ACCTCTATCACGAGGCTGCGGCATTAGAAAGAGGAAGAGGAGCAGCAGCA
GGGAGGCCTTGCTTCTTCCTCCTTCATCCTTACCATTTAAACCCCGCGAG
CCTCATCTAGCGAACGCGTCAAAGCCACCACACAGGCACCCCCACTCATT
CTCCTCCTAGCCAACAAAAATGTACCGACACGGGTGTGTCTCGTCATCTT
TCCTCTTCCTCCTCATTCTCCTCCTCTTCCTCCTCCTTTCGTCCACCAAC
GCCTTCATCTGGCGGGCCGGCCTCCTTCGCCTAGTCAAGCGCGGAAAAGG
AGAAACACCGACCCCCTCGCCTTCCATCTCTCCTCCTCCGTCCCTCTCTA
ACCCCTCCCTTGCCACACCGAATATTGCACTGTCCCCCGACGCTGCCGCC
GACGCCACTGCCCTCCAAGCACCGGCGGCAGCAGTTGCAAGGGCACCAGC
ACCAGCACCAGCACCAGAAACAGCACCATCACCAGACACTCAGCATTTCC
AAGCGAGGAAAATCGATGAGAGGGATAGAATGGACGGGAAACAATCGGAC
GGGGACAGCAAGCAGGACAACAAGGAGGATGAGGAGGAGGCCGAGCGGTT
GCTACGACAGCTGGAGCAAGAAGGAGAATGGGAGAGGCGGCTCAAGACCC
TCCAGGCGGAGATGGCCGCAGCCCGCAAGGCGGAACAAGAAGCGACGGCA
GCCGTCAAGGAGAAGGAGAAAGAGGTCCAGGGCCTTGGCAAAAATCTGTC
AGCCTTGCAGAAGAAGATGGAGACGGCAATAGCAGCAACAGCAGCAACAA
CAGCAGCAGCAGCAGCGCGGGAGGCCTCGTTGAAGAAGGAGGTGGAGGAT
ACGAGGAAGGAATTCAAGGAAAGCTTGGCAGCAGCGGTGCTGAAACACGC
CTCGCTCCAGCAGGCCTTCGAAAAAGAGAAGGCGGCGGCGGCACGAGCTC
TAGTGGAGATGAAGAAGAAAGTGGAGGAAGGGAAGGAGGCCATGGAGCAA
GTGCGAACCGCAGCAGAGGAGGAAAAGAAGCAGTGGCTACGAAAAGCCAA
GCAAGGACAAGAGATCATCGTGCAGCTGCGGAAATATGTAGAGGAGCTGG
AGGGAGGGAGGGAGAAGGCGAAGGAGGAGCTTCGACAGGTGCGCGAGGAG
AAGGCAGCAGGAATGGCGGAACGGAGGCGGATGGAGGTGGAGGGGAGGGA
GGCCGAGGAGCGGTGGGCACGCCAAATGGAACGGAAGGAGGGAGAGGTGC
GAATCCTGCAAGAGCGGATTTCTGTCGAGCTTCTCCCCGCTGCGAGGAGA
TGGGGAAAAATCAGGAGGGGGGCAGGGCCCCTGCTGCTGCTGCTGCTGTC
GGCCGGGCCGGGGGTGAGTCCCCTGGTGCAGTCGTTGAGTGTGGCGTGGG
CAGTGGGAGGGTGGGTGTATGGAGGGAGGGAGGGGGGGAGGGAGGGGGGG
AGGGAGGGAGGGAGGGCTTGGAAGCGAGCGGTGGTGGCGGGGCTAGGGTC
GTGGGTGGTGGGGTGGGCGATGGGAGGGTGGGAGGGAGGGAGGGAGGGAG
GGATGATGGGGATGGAAAGGGGGGAGGAGGCGGTGTTGTCGGCGTTAGGC
TCGGCGGTAGGAGGGCGAGGGGTGCTCGAGGGGTGGGAGGAATGGAGGGG
GAGGAGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGAGGGAGCGAGGGCAG
TGGTGCTGGGGTGGGAAGGAGTGCAGAAGGCAGTTTTGGCCAGGGCGAAG
AAGTCCGTGGAGTAG

protein sequence of jgi.p|Nanoce1779_2|658239

>mRNA_599-protein ID=mRNA_599-protein|Name=jgi.p|Nanoce1779_2|658239|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MYRHGCVSSSFLFLLILLLFLLLSSTNAFIWRAGLLRLVKRGKGETPTPS
PSISPPPSLSNPSLATPNIALSPDAAADATALQAPAAAVARAPAPAPAPE
TAPSPDTQHFQARKIDERDRMDGKQSDGDSKQDNKEDEEEAERLLRQLEQ
EGEWERRLKTLQAEMAAARKAEQEATAAVKEKEKEVQGLGKNLSALQKKM
ETAIAATAATTAAAAAREASLKKEVEDTRKEFKESLAAAVLKHASLQQAF
EKEKAAAARALVEMKKKVEEGKEAMEQVRTAAEEEKKQWLRKAKQGQEII
VQLRKYVEELEGGREKAKEELRQVREEKAAGMAERRRMEVEGREAEERWA
RQMERKEGEVRILQERISVELLPAARRWGKIRRGAGPLLLLLLSAGPGVS
PLVQSLSVAWAVGGWVYGGREGGREGGREGGRAWKRAVVAGLGSWVVGWA
MGGWEGGREGGMMGMERGEEAVLSALGSAVGGRGVLEGWEEWRGRRREGG
RKGGKEGARAVVLGWEGVQKAVLARAKKSVE*

mRNA from alignment at scaffold_3:1497606..1499470+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_599 ID=mRNA_599|Name=jgi.p|Nanoce1779_2|658239|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at scaffold_3:1497606..1499470+ (Nannochloropsis oceanica)
CCTCTCGTGCCTCACCACTCACAACAGCAAGTCTCAAACGTACCGCACAT
GCATACACAGCACAGCGGGCTGGCCTTCTTCGGGCCAGCACTGGGATAAT
ACCTCTATCACGAGGCTGCGGCATTAGAAAGAGGAAGAGGAGCAGCAGCA
GGGAGGCCTTGCTTCTTCCTCCTTCATCCTTACCATTTAAACCCCGCGAG
CCTCATCTAGCGAACGCGTCAAAGCCACCACACAGGCACCCCCACTCATT
CTCCTCCTAGCCAACAAAAATGTACCGACACGGGTGTGTCTCGTCATCTT
TCCTCTTCCTCCTCATTCTCCTCCTCTTCCTCCTCCTTTCGTCCACCAAC
GCCTTCATCTGGCGGGCCGGCCTCCTTCGCCTAGTCAAGCGCGGAAAAGG
AGAAACACCGACCCCCTCGCCTTCCATCTCTCCTCCTCCGTCCCTCTCTA
ACCCCTCCCTTGCCACACCGAATATTGCACTGTCCCCCGACGCTGCCGCC
GACGCCACTGCCCTCCAAGCACCGGCGGCAGCAGTTGCAAGGGCACCAGC
ACCAGCACCAGCACCAGAAACAGCACCATCACCAGACACTCAGCATTTCC
AAGCGAGGAAAATCGATGAGAGGGATAGAATGGACGGGAAACAATCGGAC
GGGGACAGCAAGCAGGACAACAAGGAGGATGAGGAGGAGGCCGAGCGGTT
GCTACGACAGCTGGAGCAAGAAGGAGAATGGGAGAGGCGGCTCAAGACCC
TCCAGGCGGAGATGGCCGCAGCCCGCAAGGCGGAACAAGAAGCGACGGCA
GCCGTCAAGGAGAAGGAGAAAGAGGTCCAGGGCCTTGGCAAAAATCTGTC
AGCCTTGCAGAAGAAGATGGAGACGGCAATAGCAGCAACAGCAGCAACAA
CAGCAGCAGCAGCAGCGCGGGAGGCCTCGTTGAAGAAGGAGGTGGAGGAT
ACGAGGAAGGAATTCAAGGAAAGCTTGGCAGCAGCGGTGCTGAAACACGC
CTCGCTCCAGCAGGCCTTCGAAAAAGAGAAGGCGGCGGCGGCACGAGCTC
TAGTGGAGATGAAGAAGAAAGTGGAGGAAGGGAAGGAGGCCATGGAGCAA
GTGCGAACCGCAGCAGAGGAGGAAAAGAAGCAGTGGCTACGAAAAGCCAA
GCAAGGACAAGAGATCATCGTGCAGCTGCGGAAATATGTAGAGGAGCTGG
AGGGAGGGAGGGAGAAGGCGAAGGAGGAGCTTCGACAGGTGCGCGAGGAG
AAGGCAGCAGGAATGGCGGAACGGAGGCGGATGGAGGTGGAGGGGAGGGA
GGCCGAGGAGCGGTGGGCACGCCAAATGGAACGGAAGGAGGGAGAGGTGC
GAATCCTGCAAGAGCGGATTTCTGTCGAGCTTCTCCCCGCTGCGAGGAGA
TGGGGAAAAATCAGGAGGGGGGCAGGGCCCCTGCTGCTGCTGCTGCTGTC
GGCCGGGCCGGGGGTGAGTCCCCTGGTGCAGTCGTTGAGTGTGGCGTGGG
CAGTGGGAGGGTGGGTGTATGGAGGGAGGGAGGGGGGGAGGGAGGGGGGG
AGGGAGGGAGGGAGGGCTTGGAAGCGAGCGGTGGTGGCGGGGCTAGGGTC
GTGGGTGGTGGGGTGGGCGATGGGAGGGTGGGAGGGAGGGAGGGAGGGAG
GGATGATGGGGATGGAAAGGGGGGAGGAGGCGGTGTTGTCGGCGTTAGGC
TCGGCGGTAGGAGGGCGAGGGGTGCTCGAGGGGTGGGAGGAATGGAGGGG
GAGGAGGAGGGAGGGAGGGAGGAAGGGAGGGAAGGAGGGAGCGAGGGCAG
TGGTGCTGGGGTGGGAAGGAGTGCAGAAGGCAGTTTTGGCCAGGGCGAAG
AAGTCCGTGGAGTAG

Coding sequence (CDS) from alignment at scaffold_3:1497606..1499470+

>mRNA_599 ID=mRNA_599|Name=jgi.p|Nanoce1779_2|658239|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_3:1497606..1499470+ (Nannochloropsis oceanica)
ATGTACCGACACGGGTGTGTCTCGTCATCTTTCCTCTTCCTCCTCATTCT
CCTCCTCTTCCTCCTCCTTTCGTCCACCAACGCCTTCATCTGGCGGGCCG
GCCTCCTTCGCCTAGTCAAGCGCGGAAAAGGAGAAACACCGACCCCCTCG
CCTTCCATCTCTCCTCCTCCGTCCCTCTCTAACCCCTCCCTTGCCACACC
GAATATTGCACTGTCCCCCGACGCTGCCGCCGACGCCACTGCCCTCCAAG
CACCGGCGGCAGCAGTTGCAAGGGCACCAGCACCAGCACCAGCACCAGAA
ACAGCACCATCACCAGACACTCAGCATTTCCAAGCGAGGAAAATCGATGA
GAGGGATAGAATGGACGGGAAACAATCGGACGGGGACAGCAAGCAGGACA
ACAAGGAGGATGAGGAGGAGGCCGAGCGGTTGCTACGACAGCTGGAGCAA
GAAGGAGAATGGGAGAGGCGGCTCAAGACCCTCCAGGCGGAGATGGCCGC
AGCCCGCAAGGCGGAACAAGAAGCGACGGCAGCCGTCAAGGAGAAGGAGA
AAGAGGTCCAGGGCCTTGGCAAAAATCTGTCAGCCTTGCAGAAGAAGATG
GAGACGGCAATAGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAGCGCG
GGAGGCCTCGTTGAAGAAGGAGGTGGAGGATACGAGGAAGGAATTCAAGG
AAAGCTTGGCAGCAGCGGTGCTGAAACACGCCTCGCTCCAGCAGGCCTTC
GAAAAAGAGAAGGCGGCGGCGGCACGAGCTCTAGTGGAGATGAAGAAGAA
AGTGGAGGAAGGGAAGGAGGCCATGGAGCAAGTGCGAACCGCAGCAGAGG
AGGAAAAGAAGCAGTGGCTACGAAAAGCCAAGCAAGGACAAGAGATCATC
GTGCAGCTGCGGAAATATGTAGAGGAGCTGGAGGGAGGGAGGGAGAAGGC
GAAGGAGGAGCTTCGACAGGTGCGCGAGGAGAAGGCAGCAGGAATGGCGG
AACGGAGGCGGATGGAGGTGGAGGGGAGGGAGGCCGAGGAGCGGTGGGCA
CGCCAAATGGAACGGAAGGAGGGAGAGGTGCGAATCCTGCAAGAGCGGAT
TTCTGTCGAGCTTCTCCCCGCTGCGAGGAGATGGGGAAAAATCAGGAGGG
GGGCAGGGCCCCTGCTGCTGCTGCTGCTGTCGGCCGGGCCGGGGGTGAGT
CCCCTGGTGCAGTCGTTGAGTGTGGCGTGGGCAGTGGGAGGGTGGGTGTA
TGGAGGGAGGGAGGGGGGGAGGGAGGGGGGGAGGGAGGGAGGGAGGGCTT
GGAAGCGAGCGGTGGTGGCGGGGCTAGGGTCGTGGGTGGTGGGGTGGGCG
ATGGGAGGGTGGGAGGGAGGGAGGGAGGGAGGGATGATGGGGATGGAAAG
GGGGGAGGAGGCGGTGTTGTCGGCGTTAGGCTCGGCGGTAGGAGGGCGAG
GGGTGCTCGAGGGGTGGGAGGAATGGAGGGGGAGGAGGAGGGAGGGAGGG
AGGAAGGGAGGGAAGGAGGGAGCGAGGGCAGTGGTGCTGGGGTGGGAAGG
AGTGCAGAAGGCAGTTTTGGCCAGGGCGAAGAAGTCCGTGGAGTAG

Synonyms

Publications