jgi.p|Nanoce1779_2|671668, mRNA_5988 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671668
Unique NamemRNA_5988
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length239
Alignment locationscaffold_14:251084..251422 +

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Properties
Property NameValue
TranscriptId671754
TrackFilteredModels2
ProteinId671668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:251084..251422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671668gene_5988Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671668mRNA_5988-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5988CDS_5988Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5988 ID=mRNA_5988|Name=jgi.p|Nanoce1779_2|671668|organism=Nannochloropsis oceanica|type=mRNA|length=239bp
ATGGTGTGTGATACACTGTGGCGGATTAACTTTTTGTTTGCCTCCTTGTT
GCGGAGTATGCCGAGACGGGCGTTGGCGCTGAAGACGGTGTGTAAGCTTC
GATGGATTATATACGACGCTAAGGCTGAGAAGGCTATAGAGACCAGTAAG
GATGCCGAAGATATAGAGGAGCATGTCATGGCAGCCAAAGACGAACTTTT
TAAGTCTGCTGAGTGAAAAGAAGGAAAACAGTTGGTAAG
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protein sequence of jgi.p|Nanoce1779_2|671668

>mRNA_5988-protein ID=mRNA_5988-protein|Name=jgi.p|Nanoce1779_2|671668|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MVCDTLWRINFLFASLLRSMPRRALALKTVCKLRWIIYDAKAEKAIETSK
DAEDIEEHVMAAKDELFKSAE*
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mRNA from alignment at scaffold_14:251084..251422+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5988 ID=mRNA_5988|Name=jgi.p|Nanoce1779_2|671668|organism=Nannochloropsis oceanica|type=mRNA|length=339bp|location=Sequence derived from alignment at scaffold_14:251084..251422+ (Nannochloropsis oceanica)
ATGGTGTGTGATACACTGTGGCGGATTAACTTTTTGTTTGCCTCCTTGTT
GTACGCGATTCTCATATTCTGCTTCCAAATGAATTGCTTATTCTCCCTTT
CTCCGACCTTTTCTAACATGTATCAGCATTTACACTTTCTTTTTCTTCAG
GCGGAGTATGCCGAGACGGGCGTTGGCGCTGAAGACGGTGTGTAAGCTTC
GATGGATTATATACGACGCTAAGGCTGAGAAGGCTATAGAGACCAGTAAG
GATGCCGAAGATATAGAGGAGCATGTCATGGCAGCCAAAGACGAACTTTT
TAAGTCTGCTGAGTGAAAAGAAGGAAAACAGTTGGTAAG
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Coding sequence (CDS) from alignment at scaffold_14:251084..251422+

>mRNA_5988 ID=mRNA_5988|Name=jgi.p|Nanoce1779_2|671668|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_14:251084..251422+ (Nannochloropsis oceanica)
ATGGTGTGTGATACACTGTGGCGGATTAACTTTTTGTTTGCCTCCTTGTT
GCGGAGTATGCCGAGACGGGCGTTGGCGCTGAAGACGGTGTGTAAGCTTC
GATGGATTATATACGACGCTAAGGCTGAGAAGGCTATAGAGACCAGTAAG
GATGCCGAAGATATAGAGGAGCATGTCATGGCAGCCAAAGACGAACTTTT
TAAGTCTGCTGAGTGAATGGTGTGTGATACACTGTGGCGGATTAACTTTT
TGTTTGCCTCCTTGTTGCGGAGTATGCCGAGACGGGCGTTGGCGCTGAAG
ACGGTGTGTAAGCTTCGATGGATTATATACGACGCTAAGGCTGAGAAGGC
TATAGAGACCAGTAAGGATGCCGAAGATATAGAGGAGCATGTCATGGCAG
CCAAAGACGAACTTTTTAAGTCTGCTGAGTGA
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Synonyms
Publications