jgi.p|Nanoce1779_2|593390, mRNA_5986 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593390
Unique NamemRNA_5986
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length997
Alignment locationscaffold_14:246279..247458 +

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Properties
Property NameValue
TranscriptId593476
TrackFilteredModels2
ProteinId593390
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:246279..247458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593390gene_5986Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593390mRNA_5986-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5986CDS_5986Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5986 ID=mRNA_5986|Name=jgi.p|Nanoce1779_2|593390|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
AAACAACTCTCAACTTCAACTTTCAACTACCTTGAACACGGCGACCTAAC
GTGGCCCTTATCTATACCGCACTGCTTCTTTTCTGGAGCTGTAGCCTTTT
CGTCATTATGTCCCTCACGGCCTGGACACGTGCCCTATTCCCGCGGTGGA
AGGGACATAACGTTTGCTGGCGCGAAGTCTTGGGACCCTCCCAAAATCGG
TTGCTGCTGCCCTGGGGCTTCATCCCAGGCCAAGACGTTCAAACCAAGGT
AGCACCGCGTATCCAGCGACTGGTTAAGGAAACGAAGCTTGATCCAACAT
CGCCATCTTATTCCTCGCACTATCGCAACCATGCCAGCAATGAGATTATC
CAAGATCTTTTTCATTCCTTAGCAGACGACTTCGCAAAAGGGTCCGAGCA
AGCCTACTTAGCCGTCGCTGAATCATATCTGACTCCAACCTGTGGCAGCA
GCTCCTTTACACAGTCGAACTACTGTACCCCGGACTTGTCTTGTTTCTTG
GAGGATGTCAAAAGGTCTTATACCGAGGCTGGCGTCCAACCTTTTTTGCG
GGTAGAGTCAGTTGAAGCGAGGTTACAATCGTTACGGATGGAAGAGGGTT
TGCTGTCTAAGAACACGTATTATTTCTTCGGGGGAACGATGGGGAGGGAG
GAGGCCTTGACACATATCTTGGAGGGGGTGATTGGTCCGGAAGGAAGGCT
GTTACAAGAGCTGGAGGGTGATGTTCCCCGACGCTTAGTGGCGGAGGTAG
AGATAAATGTGAGGGAAATTTTTTGGTTTGGGGGCTTGAAGGAGAAGAAG
GAGGAAGGATGGGGCGCGGGAGTGGAAAAAGAGAGGAAGATCCATTTCTT
TACGTTTGAGAGTGATTGGTTGGGAGGGGAGAGGGAGGAGGAGTTGGAAT
GGGTGATAAGTAATATAAATGATGTGGTGGCTTCACCTTCTCTATCGCGG
GCGTTGATGCAAGGATAGGGTGAAAGAGTAGAAGAAGAATGGCGTTC
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protein sequence of jgi.p|Nanoce1779_2|593390

>mRNA_5986-protein ID=mRNA_5986-protein|Name=jgi.p|Nanoce1779_2|593390|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MSLTAWTRALFPRWKGHNVCWREVLGPSQNRLLLPWGFIPGQDVQTKVAP
RIQRLVKETKLDPTSPSYSSHYRNHASNEIIQDLFHSLADDFAKGSEQAY
LAVAESYLTPTCGSSSFTQSNYCTPDLSCFLEDVKRSYTEAGVQPFLRVE
SVEARLQSLRMEEGLLSKNTYYFFGGTMGREEALTHILEGVIGPEGRLLQ
ELEGDVPRRLVAEVEINVREIFWFGGLKEKKEEGWGAGVEKERKIHFFTF
ESDWLGGEREEELEWVISNINDVVASPSLSRALMQG*
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mRNA from alignment at scaffold_14:246279..247458+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5986 ID=mRNA_5986|Name=jgi.p|Nanoce1779_2|593390|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp|location=Sequence derived from alignment at scaffold_14:246279..247458+ (Nannochloropsis oceanica)
AAACAACTCTCAACTTCAACTTTCAACTACCTTGGTAAGCACCATGTCGA
TTCCTGCTATTTGTGTCCTCTCAAGCATTTCCCACACATTCCTTTCTAAA
AGACATCTTGGATTCGACCGTGATTCTCGGTAGTTTACCACTCGACAAGC
CTGGGCCACACTCAATTACCAAGCTGATCGCCCCTCCCCTTACGCCCCCA
CAACGCGACATCAACAGAACACGGCGACCTAACGTGGCCCTTATCTATAC
CGCACTGCTTCTTTTCTGGAGCTGTAGCCTTTTCGTCATTATGTCCCTCA
CGGCCTGGACACGTGCCCTATTCCCGCGGTGGAAGGGACATAACGTTTGC
TGGCGCGAAGTCTTGGGACCCTCCCAAAATCGGTTGCTGCTGCCCTGGGG
CTTCATCCCAGGCCAAGACGTTCAAACCAAGGTAGCACCGCGTATCCAGC
GACTGGTTAAGGAAACGAAGCTTGATCCAACATCGCCATCTTATTCCTCG
CACTATCGCAACCATGCCAGCAATGAGATTATCCAAGATCTTTTTCATTC
CTTAGCAGACGACTTCGCAAAAGGGTCCGAGCAAGCCTACTTAGCCGTCG
CTGAATCATATCTGACTCCAACCTGTGGCAGCAGCTCCTTTACACAGTCG
AACTACTGTACCCCGGACTTGTCTTGTTTCTTGGAGGATGTCAAAAGGTC
TTATACCGAGGCTGGCGTCCAACCTTTTTTGCGGGTAGAGTCAGTTGAAG
CGAGGTTACAATCGTTACGGATGGAAGAGGGTTTGCTGTCTAAGAACACG
TATTATTTCTTCGGGGGAACGATGGGGAGGGAGGAGGCCTTGACACATAT
CTTGGAGGGGGTGATTGGTCCGGAAGGAAGGCTGTTACAAGAGCTGGAGG
GTGATGTTCCCCGACGCTTAGTGGCGGAGGTAGAGATAAATGTGAGGGAA
ATTTTTTGGTTTGGGGGCTTGAAGGAGAAGAAGGAGGAAGGATGGGGCGC
GGGAGTGGAAAAAGAGAGGAAGATCCATTTCTTTACGTTTGAGAGTGATT
GGTTGGGAGGGGAGAGGGAGGAGGAGTTGGAATGGGTGATAAGTAATATA
AATGATGTGGTGGCTTCACCTTCTCTATCGCGGGCGTTGATGCAAGGATA
GGGTGAAAGAGTAGAAGAAGAATGGCGTTC
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Coding sequence (CDS) from alignment at scaffold_14:246279..247458+

>mRNA_5986 ID=mRNA_5986|Name=jgi.p|Nanoce1779_2|593390|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_14:246279..247458+ (Nannochloropsis oceanica)
ATGTCCCTCACGGCCTGGACACGTGCCCTATTCCCGCGGTGGAAGGGACA
TAACGTTTGCTGGCGCGAAGTCTTGGGACCCTCCCAAAATCGGTTGCTGC
TGCCCTGGGGCTTCATCCCAGGCCAAGACGTTCAAACCAAGGTAGCACCG
CGTATCCAGCGACTGGTTAAGGAAACGAAGCTTGATCCAACATCGCCATC
TTATTCCTCGCACTATCGCAACCATGCCAGCAATGAGATTATCCAAGATC
TTTTTCATTCCTTAGCAGACGACTTCGCAAAAGGGTCCGAGCAAGCCTAC
TTAGCCGTCGCTGAATCATATCTGACTCCAACCTGTGGCAGCAGCTCCTT
TACACAGTCGAACTACTGTACCCCGGACTTGTCTTGTTTCTTGGAGGATG
TCAAAAGGTCTTATACCGAGGCTGGCGTCCAACCTTTTTTGCGGGTAGAG
TCAGTTGAAGCGAGGTTACAATCGTTACGGATGGAAGAGGGTTTGCTGTC
TAAGAACACGTATTATTTCTTCGGGGGAACGATGGGGAGGGAGGAGGCCT
TGACACATATCTTGGAGGGGGTGATTGGTCCGGAAGGAAGGCTGTTACAA
GAGCTGGAGGGTGATGTTCCCCGACGCTTAGTGGCGGAGGTAGAGATAAA
TGTGAGGGAAATTTTTTGGTTTGGGGGCTTGAAGGAGAAGAAGGAGGAAG
GATGGGGCGCGGGAGTGGAAAAAGAGAGGAAGATCCATTTCTTTACGTTT
GAGAGTGATTGGTTGGGAGGGGAGAGGGAGGAGGAGTTGGAATGGGTGAT
AAGTAATATAAATGATGTGGTGGCTTCACCTTCTCTATCGCGGGCGTTGA
TGCAAGGATAG
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Synonyms
Publications