jgi.p|Nanoce1779_2|78299, mRNA_5983 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|78299
Unique NamemRNA_5983
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length936
Alignment locationscaffold_14:240760..242288 -

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Properties
Property NameValue
TranscriptId78385
TrackFilteredModels2
ProteinId78299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:240760..242288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78299gene_5983Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78299mRNA_5983-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5983CDS_5983Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5983 ID=mRNA_5983|Name=jgi.p|Nanoce1779_2|78299|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
CAGGCAAACAATCTCGTTGAAGGCAACCCTGTAGGATTTGCTTCGACAGA
TACCTTCCGTTCCCTCGCTCTATCTCACCCAAGACAACCCCTCCTGAAAC
TCTTTTACAGCTTAAACCATGCGTACGGTCACGACGCTTGTGGCGCTGTC
TGCCTTGATGGGAGCAAGTGCCTTCTTGGCCCCTGTACCGGCGCCTCAGC
AGGCTGGTGCCAGCGCAGATAACGACGATGACTGGAAGAGTATCATTAAC
TCGGAAGCCAACCTTTCCAACTATCTGGGCCAGAGTGGCTTCCGCTACAA
CATGAACCAAACCCCGGAAGAGGACAAGACGGAGGGACGCAACCTGTTCT
CGAAGATGTTTGGTGCTACCAGTAATAACGCGGCGCGTATGTCGGCCCGC
TCTTATGGACGGTCGCTGACTATTGACACGTACGATGCTGCCAAGGCAGC
TGAGAACAAGGAGTGGATCGCCAAGTACGGGTACAAGCGATGGGGCACTT
CCTACGTGGACAAGTCCGACCTCGAGACCGAAAAGAGCGCCGCCGCCACC
TCCATTGCCCCGAAGAAGGCTGCACCTGCCCCCAAGGCGGCTAGCAAGCC
CGAATTTTCCTTCCCTAAGCCAAGGCTGCTGCTCCCGCTACGGGGCCCTT
GGCCAGCAAGCCCCAAGCGCAGGGGAAGGGGAACCTCAATCTGCTTAAGA
AGCAGAGCAATTAAGGAATGGAAGGGAGAAACGGAGGGACGGATGACATA
GATGATGATGCGGGAAGGAGAGGAAGGGGAAGGGAGGTTTGAGAGAGGAT
TCATAAGATGACGTGAACGACGACGACCACGACAAGGGCGAAGAAGAAAG
CCTTTATTAGACAACCCGGGTTGGTTGAATCGGATGTCGGTAGTTTATTT
GGGTGTAGTCGTGTTTCTTCTCTTTCTTCTGTTTCT
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protein sequence of jgi.p|Nanoce1779_2|78299

>mRNA_5983-protein ID=mRNA_5983-protein|Name=jgi.p|Nanoce1779_2|78299|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRTVTTLVALSALMGASAFLAPVPAPQQAGASADNDDDWKSIINSEANLS
NYLGQSGFRYNMNQTPEEDKTEGRNLFSKMFGATSNNAARMSARSYGRSL
TIDTYDAAKAAENKEWIAKYGYKRWGTSYVDKSDLETEKSAAATSIAPKK
AAPAPKAASKPEFSFPKPRLLLPLRGPWPASPKRRGRGTSICLRSRAIKE
WKGETEGRMT*
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mRNA from alignment at scaffold_14:240760..242288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5983 ID=mRNA_5983|Name=jgi.p|Nanoce1779_2|78299|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp|location=Sequence derived from alignment at scaffold_14:240760..242288- (Nannochloropsis oceanica)
CAGGCAAACAATCTCGTTGAAGGCAACCCTGTAGGATTTGCTTCGACAGA
TACCTTCCGTTCCCTCGCTCTATCTCACCCAAGACAACCCCTCCTGAAAC
TCTTTTACAGCTTAAACCATGCGTACGGTCACGACGCTTGTGGCGCTGTC
TGCCTTGATGGGAGCAAGTGCCTTCTTGGCCCCTGTACCGGCGCCTCAGC
AGGTATGTCGTTAGTGGCGAGGACGAGCAATGGATGCGAGGAGGCTTTTG
ACACGTCGCTATGGTGTTCGGCTGGAAAAAAATGGCAGTGAGAGACGCGA
TGTATGTGTACAAATACCGAGATGTTTCATCCTGTTGATGTGACCGTGGA
AAAAACCCCAGTCTTGTCTCTCTTGGTTGCCACTCTCTCCCAGGGTGTAC
CTTTTTTGCCTTTCATCCCCTACACTCCCTCCTTACCACATATATTGTAC
GAACGACGATGGCGAAAAGCAGTTTAAGCCTGCTGTGCTTATGCCTTTTA
AATTTCCCTGTCTTCTATCCAAACTCCTCTGTTTCCCAGCGGCGGAAACC
AGCGCTCGCATTCCCAACCTCACCCCTCTGCCTCTCTTCCTCATTGTCGC
TCACGACACCTTTCTCCTCTCCGCATGAAACTTTCCCCCTATCATTTTTT
CAGCACACCCGTGTCCAGGCTGGTGCCAGCGCAGATAACGACGATGACTG
GAAGAGTATCATTAACTCGGAAGCCAACCTTTCCAACTATCTGGGCCAGA
GTGGCTTCCGCTACAACATGAACCAAACCCCGGAAGAGGACAAGACGGAG
GGACGCAACCTGTTCTCGAAGATGTTTGGTGCTACCAGTAATAACGCGGC
GCGTATGTCGGCCCGCTCTTATGGACGGTCGCTGACTATTGACACGTACG
ATGCTGCCAAGGCAGCTGAGAACAAGGAGTGGATCGCCAAGTACGGGTAC
AAGCGATGGGGCACTTCCTACGTGGACAAGTCCGACCTCGAGACCGAAAA
GAGCGCCGCCGCCACCTCCATTGCCCCGAAGAAGGCTGCACCTGCCCCCA
AGGCGGCTAGCAAGCCCGAATTTTCCTTCCCTAAGTTCGGTGGTGGAGGT
GGAGCGAAGAGCGCGGCAGCGGCGCCTGCTAAGAAGACGAGCCCCGTCAA
GGTGACGGCTGCCAAACCCGCCGCTGCTGCCAAGCCCGCTGCACCTACTG
CTGCTCCTAAGGCCAAGGCTGCTGCTCCCGCTACGGGGCCCTTGGCCAGC
AAGCCCCAAGCGCAGGGGAAGGGGAACCTCAATCTGCTTAAGAAGCAGAG
CAATTAAGGAATGGAAGGGAGAAACGGAGGGACGGATGACATAGATGATG
ATGCGGGAAGGAGAGGAAGGGGAAGGGAGGTTTGAGAGAGGATTCATAAG
ATGACGTGAACGACGACGACCACGACAAGGGCGAAGAAGAAAGCCTTTAT
TAGACAACCCGGGTTGGTTGAATCGGATGTCGGTAGTTTATTTGGGTGTA
GTCGTGTTTCTTCTCTTTCTTCTGTTTCT
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Coding sequence (CDS) from alignment at scaffold_14:240760..242288-

>mRNA_5983 ID=mRNA_5983|Name=jgi.p|Nanoce1779_2|78299|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_14:240760..242288- (Nannochloropsis oceanica)
GCCAAGGCTGCTGCTCCCGCTACGGGGCCCTTGGCCAGCAAGCCCCAAGC
GCAGGGGAAGGGGAACCTCAATCTGCTTAAGAAGCAGAGCAATTAAGGAA
TGGAAGGGAGAAACGGAGGGACGGATGACATAGGCTGGTGCCAGCGCAGA
TAACGACGATGACTGGAAGAGTATCATTAACTCGGAAGCCAACCTTTCCA
ACTATCTGGGCCAGAGTGGCTTCCGCTACAACATGAACCAAACCCCGGAA
GAGGACAAGACGGAGGGACGCAACCTGTTCTCGAAGATGTTTGGTGCTAC
CAGTAATAACGCGGCGCGTATGTCGGCCCGCTCTTATGGACGGTCGCTGA
CTATTGACACGTACGATGCTGCCAAGGCAGCTGAGAACAAGGAGTGGATC
GCCAAGTACGGGTACAAGCGATGGGGCACTTCCTACGTGGACAAGTCCGA
CCTCGAGACCGAAAAGAGCGCCGCCGCCACCTCCATTGCCCCGAAGAAGG
CTGCACCTGCCCCCAAGGCGGCTAGCAAGCCCGAATTTTCCTTCCCTAAA
TGCGTACGGTCACGACGCTTGTGGCGCTGTCTGCCTTGATGGGAGCAAGT
GCCTTCTTGGCCCCTGTACCGGCGCCTCAGCAGGCCAAGGCTGCTGCTCC
CGCTACGGGGCCCTTGGCCAGCAAGCCCCAAGCGCAGGGGAAGGGGAACC
TCAATCTGCTTAAGAAGCAGAGCAATTAAGGAATGGAAGGGAGAAACGGA
GGGACGGATGACATAGGCTGGTGCCAGCGCAGATAACGACGATGACTGGA
AGAGTATCATTAACTCGGAAGCCAACCTTTCCAACTATCTGGGCCAGAGT
GGCTTCCGCTACAACATGAACCAAACCCCGGAAGAGGACAAGACGGAGGG
ACGCAACCTGTTCTCGAAGATGTTTGGTGCTACCAGTAATAACGCGGCGC
GTATGTCGGCCCGCTCTTATGGACGGTCGCTGACTATTGACACGTACGAT
GCTGCCAAGGCAGCTGAGAACAAGGAGTGGATCGCCAAGTACGGGTACAA
GCGATGGGGCACTTCCTACGTGGACAAGTCCGACCTCGAGACCGAAAAGA
GCGCCGCCGCCACCTCCATTGCCCCGAAGAAGGCTGCACCTGCCCCCAAG
GCGGCTAGCAAGCCCGAATTTTCCTTCCCTAAATGCGTACGGTCACGACG
CTTGTGGCGCTGTCTGCCTTGATGGGAGCAAGTGCCTTCTTGGCCCCTGT
ACCGGCGCCTCAGCAGGCCAAGGCTGCTGCTCCCGCTACGGGGCCCTTGG
CCAGCAAGCCCCAAGCGCAGGGGAAGGGGAACCTCAATCTGCTTAAGAAG
CAGAGCAATTAAGGAATGGAAGGGAGAAACGGAGGGACGGATGACATAGG
CTGGTGCCAGCGCAGATAACGACGATGACTGGAAGAGTATCATTAACTCG
GAAGCCAACCTTTCCAACTATCTGGGCCAGAGTGGCTTCCGCTACAACAT
GAACCAAACCCCGGAAGAGGACAAGACGGAGGGACGCAACCTGTTCTCGA
AGATGTTTGGTGCTACCAGTAATAACGCGGCGCGTATGTCGGCCCGCTCT
TATGGACGGTCGCTGACTATTGACACGTACGATGCTGCCAAGGCAGCTGA
GAACAAGGAGTGGATCGCCAAGTACGGGTACAAGCGATGGGGCACTTCCT
ACGTGGACAAGTCCGACCTCGAGACCGAAAAGAGCGCCGCCGCCACCTCC
ATTGCCCCGAAGAAGGCTGCACCTGCCCCCAAGGCGGCTAGCAAGCCCGA
ATTTTCCTTCCCTAAATGCGTACGGTCACGACGCTTGTGGCGCTGTCTGC
CTTGATGGGAGCAAGTGCCTTCTTGGCCCCTGTACCGGCGCCTCAGCAG
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Synonyms
Publications