jgi.p|Nanoce1779_2|593372, mRNA_5982 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593372
Unique NamemRNA_5982
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length710
Alignment locationscaffold_14:240121..240830 +

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Properties
Property NameValue
TranscriptId593458
TrackFilteredModels2
ProteinId593372
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:240121..240830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593372gene_5982Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593372mRNA_5982-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5982CDS_5982Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5982 ID=mRNA_5982|Name=jgi.p|Nanoce1779_2|593372|organism=Nannochloropsis oceanica|type=mRNA|length=710bp
GAGGACGAGGGGGAGGAGTTGTTGGTGACTGGTCGAGGGGGTGTCGGAGG
GGCGAAAAGTGGGAGTGGAAAAATATTCGGTCGGTGGGCAAAGGCCTCCA
AGGGAGGGAACCCGAGCACGGCTTAATGCACGGCTTGTTATTGTTGTTGG
TGCGAATTGAGATAGATCAGGGAAGATGGGTGGTAGGAGAGTAAGGATCT
ATACTTTTGGTGGTGCTTGCCTTGTGCCCTCTCTCTTACTCTCGGTTTGT
CTGTATGCTGTACGTGTGGGAGCGAGCGTACTGGCAGGATGTCCCTTATT
TAACGGTGTATTTATTCTCATGTCACCATCAACGGGGTGCTCACTGCCCG
CTTTGCATTTTACATCGAATATATTTTCCCCTCTCCTAGACCCCCTCCCA
CTACCGTCCCCAGTAAGGGAAAACATGAAACATGAGTGGACGTGTCCATG
TTAGGACGAAAGACCGACGCTCCTATCCCCTTCCCCTGCAGCCTTTCCCC
CTCTCTGCAAACATGTGAGTGTCATGCATTTTAATCGAGCGTTGCTTATC
ACCCCAAGAAAAAGAAATAAAGAAAAGGACGGTGAAGCGAGAGGTAACAG
AAGGAAAGGAGAGAGATGAATACTAGCTGAAGCCAAGGAAGAAACAGAAG
AAAGAGAAGAAACACGACTACACCCAAATAAACTACCGACATCCGATTCA
ACCAACCCGG
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protein sequence of jgi.p|Nanoce1779_2|593372

>mRNA_5982-protein ID=mRNA_5982-protein|Name=jgi.p|Nanoce1779_2|593372|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MGGRRVRIYTFGGACLVPSLLLSVCLYAVRVGASVLAGCPLFNGVFILMS
PSTGCSLPALHFTSNIFSPLLDPLPLPSPVRENMKHEWTCPC*
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mRNA from alignment at scaffold_14:240121..240830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5982 ID=mRNA_5982|Name=jgi.p|Nanoce1779_2|593372|organism=Nannochloropsis oceanica|type=mRNA|length=710bp|location=Sequence derived from alignment at scaffold_14:240121..240830+ (Nannochloropsis oceanica)
GAGGACGAGGGGGAGGAGTTGTTGGTGACTGGTCGAGGGGGTGTCGGAGG
GGCGAAAAGTGGGAGTGGAAAAATATTCGGTCGGTGGGCAAAGGCCTCCA
AGGGAGGGAACCCGAGCACGGCTTAATGCACGGCTTGTTATTGTTGTTGG
TGCGAATTGAGATAGATCAGGGAAGATGGGTGGTAGGAGAGTAAGGATCT
ATACTTTTGGTGGTGCTTGCCTTGTGCCCTCTCTCTTACTCTCGGTTTGT
CTGTATGCTGTACGTGTGGGAGCGAGCGTACTGGCAGGATGTCCCTTATT
TAACGGTGTATTTATTCTCATGTCACCATCAACGGGGTGCTCACTGCCCG
CTTTGCATTTTACATCGAATATATTTTCCCCTCTCCTAGACCCCCTCCCA
CTACCGTCCCCAGTAAGGGAAAACATGAAACATGAGTGGACGTGTCCATG
TTAGGACGAAAGACCGACGCTCCTATCCCCTTCCCCTGCAGCCTTTCCCC
CTCTCTGCAAACATGTGAGTGTCATGCATTTTAATCGAGCGTTGCTTATC
ACCCCAAGAAAAAGAAATAAAGAAAAGGACGGTGAAGCGAGAGGTAACAG
AAGGAAAGGAGAGAGATGAATACTAGCTGAAGCCAAGGAAGAAACAGAAG
AAAGAGAAGAAACACGACTACACCCAAATAAACTACCGACATCCGATTCA
ACCAACCCGG
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Coding sequence (CDS) from alignment at scaffold_14:240121..240830+

>mRNA_5982 ID=mRNA_5982|Name=jgi.p|Nanoce1779_2|593372|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_14:240121..240830+ (Nannochloropsis oceanica)
ATGGGTGGTAGGAGAGTAAGGATCTATACTTTTGGTGGTGCTTGCCTTGT
GCCCTCTCTCTTACTCTCGGTTTGTCTGTATGCTGTACGTGTGGGAGCGA
GCGTACTGGCAGGATGTCCCTTATTTAACGGTGTATTTATTCTCATGTCA
CCATCAACGGGGTGCTCACTGCCCGCTTTGCATTTTACATCGAATATATT
TTCCCCTCTCCTAGACCCCCTCCCACTACCGTCCCCAGTAAGGGAAAACA
TGAAACATGAGTGGACGTGTCCATGTTAG
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Synonyms
Publications