jgi.p|Nanoce1779_2|593370, mRNA_5980 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593370
Unique NamemRNA_5980
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length580
Alignment locationscaffold_14:237033..237612 +

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Properties
Property NameValue
TranscriptId593456
TrackFilteredModels2
ProteinId593370
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:237033..237612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593370gene_5980Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593370mRNA_5980-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5980CDS_5980Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5980 ID=mRNA_5980|Name=jgi.p|Nanoce1779_2|593370|organism=Nannochloropsis oceanica|type=mRNA|length=580bp
GCTGAGCGTGGAATGTGATCGCCAAGTGCAGGCGGCAACGGTGAGACGAG
GCATATCAAGAAGACTCCTCTACAAGAACGTGGGAATTGGGAGGCCTCGG
CATGTCTGGCATCTACGCCTAATATTCCTCCACCAATATGCGTAACGTTT
CCACGAGAATTGAATGCCCATGGTCGTGCATGAGGCCATGATTTTCCTTC
ATTTACTCTCTTCTTCCAGTCTTTCCTATTACTATAGATCTCGCGGTTTT
CTGTGTTTCTACTTTGTTCCACTTGCCATAGTACCCGATATATTTCAACC
ATTCCATCACGAGGCACGAGGATGTGCCCAATGGGCTTGTGGCTTAATGT
ACCGGAGCTCTCTAGGCCCAGAGCGAACCGATGGGCGCCTTTATTGACCA
TTCCACGACCATTGTTCTTCGTGCAACCAGCCCAAGCCGGACCAGGTCTT
ACCGTGTGCTTCTTCCGTGTGATGCCACGCCCACGCACTCATCCCCTCCC
CCCAAACTTGACGTAACGACAGAATGAAGACTCGCCTCGCACTCTTCGCT
GCGACGTCGTGGCATGCGGCCGGAGTGGTG
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protein sequence of jgi.p|Nanoce1779_2|593370

>mRNA_5980-protein ID=mRNA_5980-protein|Name=jgi.p|Nanoce1779_2|593370|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MPMVVHEAMIFLHLLSSSSLSYYYRSRGFLCFYFVPLAIVPDIFQPFHHE
ARGCAQWACGLMYRSSLGPERTDGRLY*
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mRNA from alignment at scaffold_14:237033..237612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5980 ID=mRNA_5980|Name=jgi.p|Nanoce1779_2|593370|organism=Nannochloropsis oceanica|type=mRNA|length=580bp|location=Sequence derived from alignment at scaffold_14:237033..237612+ (Nannochloropsis oceanica)
GCTGAGCGTGGAATGTGATCGCCAAGTGCAGGCGGCAACGGTGAGACGAG
GCATATCAAGAAGACTCCTCTACAAGAACGTGGGAATTGGGAGGCCTCGG
CATGTCTGGCATCTACGCCTAATATTCCTCCACCAATATGCGTAACGTTT
CCACGAGAATTGAATGCCCATGGTCGTGCATGAGGCCATGATTTTCCTTC
ATTTACTCTCTTCTTCCAGTCTTTCCTATTACTATAGATCTCGCGGTTTT
CTGTGTTTCTACTTTGTTCCACTTGCCATAGTACCCGATATATTTCAACC
ATTCCATCACGAGGCACGAGGATGTGCCCAATGGGCTTGTGGCTTAATGT
ACCGGAGCTCTCTAGGCCCAGAGCGAACCGATGGGCGCCTTTATTGACCA
TTCCACGACCATTGTTCTTCGTGCAACCAGCCCAAGCCGGACCAGGTCTT
ACCGTGTGCTTCTTCCGTGTGATGCCACGCCCACGCACTCATCCCCTCCC
CCCAAACTTGACGTAACGACAGAATGAAGACTCGCCTCGCACTCTTCGCT
GCGACGTCGTGGCATGCGGCCGGAGTGGTG
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Coding sequence (CDS) from alignment at scaffold_14:237033..237612+

>mRNA_5980 ID=mRNA_5980|Name=jgi.p|Nanoce1779_2|593370|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_14:237033..237612+ (Nannochloropsis oceanica)
ATGCCCATGGTCGTGCATGAGGCCATGATTTTCCTTCATTTACTCTCTTC
TTCCAGTCTTTCCTATTACTATAGATCTCGCGGTTTTCTGTGTTTCTACT
TTGTTCCACTTGCCATAGTACCCGATATATTTCAACCATTCCATCACGAG
GCACGAGGATGTGCCCAATGGGCTTGTGGCTTAATGTACCGGAGCTCTCT
AGGCCCAGAGCGAACCGATGGGCGCCTTTATTGA
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Synonyms
Publications