jgi.p|Nanoce1779_2|78173, mRNA_5979 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|78173
Unique NamemRNA_5979
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length809
Alignment locationscaffold_14:236220..237028 -

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Properties
Property NameValue
TranscriptId78259
TrackFilteredModels2
ProteinId78173
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:236220..237028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78173gene_5979Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78173mRNA_5979-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5979CDS_5979Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5979 ID=mRNA_5979|Name=jgi.p|Nanoce1779_2|78173|organism=Nannochloropsis oceanica|type=mRNA|length=809bp
CAGAATACATGATACCATACGCATAACCATAGGGCCCTCGACATCACCCA
AGCGCCTATAATGCCACGCCGTGCTGCCGCCGCTGTGGTGGCTGAAGCTC
CCGCCGTCAGTACCAAGAAAAAGGAAGGAAATACAGCCACGACAGGCGCC
GCCGCTGAGGCCCCTCCCACAGGCCCTGTGGCGTCTGTCTCTGACACTAC
TACCAAGAAAAGCGGCGTGGAAGAAGAGGTGGAGGACATTTTTGAGGAGG
ATGAGACGATACTGGCGAAAGATAGCGGGCAATTGTACGAGGCCAAGGTC
CTAAAGGTTCAAGAAAGGAAGAAGGGGAACGCGCCGCAGTACTTCATTCA
TTACCTTGGGTGGAAGAGCAAGTGGGATAAATGGGTTGGGAGCGATGCGT
TGCTCAAAAAGAATGAGATCAACATCAAGTTGCAAGCACAGCTGAAGCAG
GCGGCGAAAAAGCGGCCGGGAGCAGGAGGGAGTGGAGGGGAAGAAGGAGA
GGAGGGTGGTAAGTCCGAAGACCACAGCAAGCGGGGGAAGAAGGAGAGAG
GAGGAGTGGGGGAAGGGCCCACGATGCCTATTGATCCAGACGTGGAGCCA
ATGACAGAGAGGGCGAATGACCCCCAGGTAACTTGAAATGGCAGCTTTCT
GGTCTCTCTCTTGTTCTTTCCGTCTCTTTCTTTTCCTTCCGATGCATGTT
TCTGATCATGATTCATTCACGCGCTCTCCCCACCTGGTTAAGGTTAAGCT
TGCGATGCCGTTTACGTTGAAGAAGCAATTGGTAGATGACTGGGAGATGG
TTACACGGT
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protein sequence of jgi.p|Nanoce1779_2|78173

>mRNA_5979-protein ID=mRNA_5979-protein|Name=jgi.p|Nanoce1779_2|78173|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPRRAAAAVVAEAPAVSTKKKEGNTATTGAAAEAPPTGPVASVSDTTTKK
SGVEEEVEDIFEEDETILAKDSGQLYEAKVLKVQERKKGNAPQYFIHYLG
WKSKWDKWVGSDALLKKNEINIKLQAQLKQAAKKRPGAGGSGGEEGEEGG
KSEDHSKRGKKERGGVGEGPTMPIDPDVEPMTERANDPQVT*
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mRNA from alignment at scaffold_14:236220..237028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5979 ID=mRNA_5979|Name=jgi.p|Nanoce1779_2|78173|organism=Nannochloropsis oceanica|type=mRNA|length=809bp|location=Sequence derived from alignment at scaffold_14:236220..237028- (Nannochloropsis oceanica)
CAGAATACATGATACCATACGCATAACCATAGGGCCCTCGACATCACCCA
AGCGCCTATAATGCCACGCCGTGCTGCCGCCGCTGTGGTGGCTGAAGCTC
CCGCCGTCAGTACCAAGAAAAAGGAAGGAAATACAGCCACGACAGGCGCC
GCCGCTGAGGCCCCTCCCACAGGCCCTGTGGCGTCTGTCTCTGACACTAC
TACCAAGAAAAGCGGCGTGGAAGAAGAGGTGGAGGACATTTTTGAGGAGG
ATGAGACGATACTGGCGAAAGATAGCGGGCAATTGTACGAGGCCAAGGTC
CTAAAGGTTCAAGAAAGGAAGAAGGGGAACGCGCCGCAGTACTTCATTCA
TTACCTTGGGTGGAAGAGCAAGTGGGATAAATGGGTTGGGAGCGATGCGT
TGCTCAAAAAGAATGAGATCAACATCAAGTTGCAAGCACAGCTGAAGCAG
GCGGCGAAAAAGCGGCCGGGAGCAGGAGGGAGTGGAGGGGAAGAAGGAGA
GGAGGGTGGTAAGTCCGAAGACCACAGCAAGCGGGGGAAGAAGGAGAGAG
GAGGAGTGGGGGAAGGGCCCACGATGCCTATTGATCCAGACGTGGAGCCA
ATGACAGAGAGGGCGAATGACCCCCAGGTAACTTGAAATGGCAGCTTTCT
GGTCTCTCTCTTGTTCTTTCCGTCTCTTTCTTTTCCTTCCGATGCATGTT
TCTGATCATGATTCATTCACGCGCTCTCCCCACCTGGTTAAGGTTAAGCT
TGCGATGCCGTTTACGTTGAAGAAGCAATTGGTAGATGACTGGGAGATGG
TTACACGGT
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Coding sequence (CDS) from alignment at scaffold_14:236220..237028-

>mRNA_5979 ID=mRNA_5979|Name=jgi.p|Nanoce1779_2|78173|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_14:236220..237028- (Nannochloropsis oceanica)
ATGCCACGCCGTGCTGCCGCCGCTGTGGTGGCTGAAGCTCCCGCCGTCAG
TACCAAGAAAAAGGAAGGAAATACAGCCACGACAGGCGCCGCCGCTGAGG
CCCCTCCCACAGGCCCTGTGGCGTCTGTCTCTGACACTACTACCAAGAAA
AGCGGCGTGGAAGAAGAGGTGGAGGACATTTTTGAGGAGGATGAGACGAT
ACTGGCGAAAGATAGCGGGCAATTGTACGAGGCCAAGGTCCTAAAGGTTC
AAGAAAGGAAGAAGGGGAACGCGCCGCAGTACTTCATTCATTACCTTGGG
TGGAAGAGCAAGTGGGATAAATGGGTTGGGAGCGATGCGTTGCTCAAAAA
GAATGAGATCAACATCAAGTTGCAAGCACAGCTGAAGCAGGCGGCGAAAA
AGCGGCCGGGAGCAGGAGGGAGTGGAGGGGAAGAAGGAGAGGAGGGTGGT
AAGTCCGAAGACCACAGCAAGCGGGGGAAGAAGGAGAGAGGAGGAGTGGG
GGAAGGGCCCACGATGCCTATTGATCCAGACGTGGAGCCAATGACAGAGA
GGGCGAATGACCCCCAGGTAACTTGA
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Synonyms
Publications