jgi.p|Nanoce1779_2|78168, mRNA_5978 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|78168
Unique NamemRNA_5978
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1395
Alignment locationscaffold_14:235017..236590 -

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Properties
Property NameValue
TranscriptId78254
TrackFilteredModels2
ProteinId78168
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:235017..236590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78168gene_5978Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78168mRNA_5978-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5978CDS_5978Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5978 ID=mRNA_5978|Name=jgi.p|Nanoce1779_2|78168|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp
CAGCTGAAGCAGGCGGCGAAAAAGCGGCCGGGAGCAGGAGGGAGTGGAGG
GGAAGAAGGAGAGGAGGGTGGTAAGTCCGAAGACCACAGCAAGCGGGGGA
AGAAGGAGAGAGGAGGAGTGGGGGAAGGGCCCACGATGCCTATTGATCCA
GACGTGGAGCCAATGACAGAGAGGGCGAATGACCCCCAGGTAACTTGAAA
TGGCAGCTTTCTGGTCTCTCTCTTGTTCTTTCCGTCTCTTTCTTTTCCTT
CCGATGCATGTTTCTGATCATGATTCATTCACGCGCTCTCCCCACCTGGT
TAAGGTTAAGCTTGCGATGCCGTTTACGTTGAAGAAGCAATTGGTAGATG
ACTGGGAGATGGTTACACGGGAGCCTCGCCAACTCGTACCCCTCCCCCGC
ACCCCGTCCGCGGCTGACGTTCTGGCCTCTTTTCTCGCGCAAAAAAAAGA
AAAAGGAAGTACTTCCGCGTTGCAACTCCGTCGCTTCGAAGAGCTGCTGG
ATGGCCTGCGGGTGTATTTTGACAGAGCCCTCCCCCTGATCCTCCTTTAT
CGACACGAGCGTTCTCAGTACGATCAGTTCTTCTCTTCCTCCTCCTCGAC
ATCCCTTCCTCCTCCTGCTCTTTCTGCTGCTGCCTCCTCCACCTCCTCCT
TGCCAACCACCATAAACAGCAATGCCAGCAGCAGCATCAGCAGCAGCAGT
AGCAGTAGTAATAGCAGTAAGAGACCCTCAGATATTTACGGCGCCGAGCA
TCTGCTCAGGCTGTTTGTGCGACTGCCCCATCTGCTAGCCCTAGCTCCCA
TGGCACCCGCGGAGTTGACGCAAGTCCAGGCCAGGCTGGGAGAGATTTTG
AAGTTCCTACAGAAGCAGCACGGCGACGTATTTTTGACAAATTACGGGAG
GAAGGAGGAGGAGGAGGGGGAGGGAGGGAAGGACGGAGGAAAGGCGGCTG
TGAAGGAGTAGTTGGAGGAGGGAGGGAGGGAGTCAGGGAGGGAAGGAGGG
AGGGAAGAAAGGAGGATCGGAGAAGATTCTGACTGGTCGTGTAGTGTTAC
ATATGAAAAGGATATGGTGGATGGATGATGGTATGTCCTTCCGATCAAGA
CTGAGAACCGAAGACAAGGATGGAGGAGGCTTAAGGGCAACTCGACACAC
AAAACTTCTCGATAGGAGGAGCGCATCAGTGAGAGCATTAGAGAGAAAGA
GAGAGAGAGTGAGAAAGAGTGAGTCAGTGAGAGAGAAAGGGATGGTGGTC
GAGAAGATATGAAGCAGAAGCAGCTGTAATAGCTGTAGTTAAATCATAGG
GATACATTCATCCACAGAGGAGATAACAAGGAAATGTGGAATTAGAAGAG
GCGATTATTTAAGAGGCGAAGTCAATTAAAACAACCGGGAGAATG
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protein sequence of jgi.p|Nanoce1779_2|78168

>mRNA_5978-protein ID=mRNA_5978-protein|Name=jgi.p|Nanoce1779_2|78168|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MAAFWSLSCSFRLFLFLPMHVSDHDSFTRSPHLVKVKLAMPFTLKKQLVD
DWEMVTREPRQLVPLPRTPSAADVLASFLAQKKEKGSTSALQLRRFEELL
DGLRVYFDRALPLILLYRHERSQYDQFFSSSSSTSLPPPALSAAASSTSS
LPTTINSNASSSISSSSSSSNSSKRPSDIYGAEHLLRLFVRLPHLLALAP
MAPAELTQVQARLGEILKFLQKQHGDVFLTNYGRKEEEEGEGGKDGGKAA
VKE*
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mRNA from alignment at scaffold_14:235017..236590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5978 ID=mRNA_5978|Name=jgi.p|Nanoce1779_2|78168|organism=Nannochloropsis oceanica|type=mRNA|length=1574bp|location=Sequence derived from alignment at scaffold_14:235017..236590- (Nannochloropsis oceanica)
CAGCTGAAGCAGGCGGCGAAAAAGCGGCCGGGAGCAGGAGGGAGTGGAGG
GGAAGAAGGAGAGGAGGGTGGTAAGTCCGAAGACCACAGCAAGCGGGGGA
AGAAGGAGAGAGGAGGAGTGGGGGAAGGGCCCACGATGCCTATTGATCCA
GACGTGGAGCCAATGACAGAGAGGGCGAATGACCCCCAGGTAACTTGAAA
TGGCAGCTTTCTGGTCTCTCTCTTGTTCTTTCCGTCTCTTTCTTTTCCTT
CCGATGCATGTTTCTGATCATGATTCATTCACGCGCTCTCCCCACCTGGT
TAAGGTTAAGCTTGCGATGCCGTTTACGTTGAAGAAGCAATTGGTAGATG
ACTGGGAGATGGTTACACGGTAGGTTGCGGGGAAGGGAGGGAGGGAAGGA
AGGAGGGAGGGAAGGAAGGAGGGAGGGGAGGGAGGGTTGTCTGAGTTCTT
GCCTTGCCTCTCTCCGTCTCCTTCATCCTGTCTTCAACCTCGACTGTCTT
TCACCCCTCCCTCCTTCCCTCCCTCTCCCATCCCCTCACGTCTTTCAGGG
AGCCTCGCCAACTCGTACCCCTCCCCCGCACCCCGTCCGCGGCTGACGTT
CTGGCCTCTTTTCTCGCGCAAAAAAAAGAAAAAGGAAGTACTTCCGCGTT
GCAACTCCGTCGCTTCGAAGAGCTGCTGGATGGCCTGCGGGTGTATTTTG
ACAGAGCCCTCCCCCTGATCCTCCTTTATCGACACGAGCGTTCTCAGTAC
GATCAGTTCTTCTCTTCCTCCTCCTCGACATCCCTTCCTCCTCCTGCTCT
TTCTGCTGCTGCCTCCTCCACCTCCTCCTTGCCAACCACCATAAACAGCA
ATGCCAGCAGCAGCATCAGCAGCAGCAGTAGCAGTAGTAATAGCAGTAAG
AGACCCTCAGATATTTACGGCGCCGAGCATCTGCTCAGGCTGTTTGTGCG
ACTGCCCCATCTGCTAGCCCTAGCTCCCATGGCACCCGCGGAGTTGACGC
AAGTCCAGGCCAGGCTGGGAGAGATTTTGAAGTTCCTACAGAAGCAGCAC
GGCGACGTATTTTTGACAAATTACGGGAGGAAGGAGGAGGAGGAGGGGGA
GGGAGGGAAGGACGGAGGAAAGGCGGCTGTGAAGGAGTAGTTGGAGGAGG
GAGGGAGGGAGTCAGGGAGGGAAGGAGGGAGGGAAGAAAGGAGGATCGGA
GAAGATTCTGACTGGTCGTGTAGTGTTACATATGAAAAGGATATGGTGGA
TGGATGATGGTATGTCCTTCCGATCAAGACTGAGAACCGAAGACAAGGAT
GGAGGAGGCTTAAGGGCAACTCGACACACAAAACTTCTCGATAGGAGGAG
CGCATCAGTGAGAGCATTAGAGAGAAAGAGAGAGAGAGTGAGAAAGAGTG
AGTCAGTGAGAGAGAAAGGGATGGTGGTCGAGAAGATATGAAGCAGAAGC
AGCTGTAATAGCTGTAGTTAAATCATAGGGATACATTCATCCACAGAGGA
GATAACAAGGAAATGTGGAATTAGAAGAGGCGATTATTTAAGAGGCGAAG
TCAATTAAAACAACCGGGAGAATG
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Coding sequence (CDS) from alignment at scaffold_14:235017..236590-

>mRNA_5978 ID=mRNA_5978|Name=jgi.p|Nanoce1779_2|78168|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_14:235017..236590- (Nannochloropsis oceanica)
GGAGCCTCGCCAACTCGTACCCCTCCCCCGCACCCCGTCCGCGGCTGACG
TTCTGGCCTCTTTTCTCGCGCAAAAAAAAGAAAAAGGAAGTACTTCCGCG
TTGCAACTCCGTCGCTTCGAAGAGCTGCTGGATGGCCTGCGGGTGTATTT
TGACAGAGCCCTCCCCCTGATCCTCCTTTATCGACACGAGCGTTCTCAGT
ACGATCAGTTCTTCTCTTCCTCCTCCTCGACATCCCTTCCTCCTCCTGCT
CTTTCTGCTGCTGCCTCCTCCACCTCCTCCTTGCCAACCACCATAAACAG
CAATGCCAGCAGCAGCATCAGCAGCAGCAGTAGCAGTAGTAATAGCAGTA
AGAGACCCTCAGATATTTACGGCGCCGAGCATCTGCTCAGGCTGTTTGTG
CGACTGCCCCATCTGCTAGCCCTAGCTCCCATGGCACCCGCGGAGTTGAC
GCAAGTCCAGGCCAGGCTGGGAGAGATTTTGAAGTTCCTACAGAAGCAGC
ACGGCGACGTATTTTTGACAAATTACGGGAGGAAGGAGGAGGAGGAGGGG
GAGGGAGGGAAGGACGGAGGAAAGGCGGCTGTGAAGGAGTAGATGGCAGC
TTTCTGGTCTCTCTCTTGTTCTTTCCGTCTCTTTCTTTTCCTTCCGATGC
ATGTTTCTGATCATGATTCATTCACGCGCTCTCCCCACCTGGTTAAGGTT
AAGCTTGCGATGCCGTTTACGTTGAAGAAGCAATTGGTAGATGACTGGGA
GATGGTTACACGGGAGCCTCGCCAACTCGTACCCCTCCCCCGCACCCCGT
CCGCGGCTGACGTTCTGGCCTCTTTTCTCGCGCAAAAAAAAGAAAAAGGA
AGTACTTCCGCGTTGCAACTCCGTCGCTTCGAAGAGCTGCTGGATGGCCT
GCGGGTGTATTTTGACAGAGCCCTCCCCCTGATCCTCCTTTATCGACACG
AGCGTTCTCAGTACGATCAGTTCTTCTCTTCCTCCTCCTCGACATCCCTT
CCTCCTCCTGCTCTTTCTGCTGCTGCCTCCTCCACCTCCTCCTTGCCAAC
CACCATAAACAGCAATGCCAGCAGCAGCATCAGCAGCAGCAGTAGCAGTA
GTAATAGCAGTAAGAGACCCTCAGATATTTACGGCGCCGAGCATCTGCTC
AGGCTGTTTGTGCGACTGCCCCATCTGCTAGCCCTAGCTCCCATGGCACC
CGCGGAGTTGACGCAAGTCCAGGCCAGGCTGGGAGAGATTTTGAAGTTCC
TACAGAAGCAGCACGGCGACGTATTTTTGACAAATTACGGGAGGAAGGAG
GAGGAGGAGGGGGAGGGAGGGAAGGACGGAGGAAAGGCGGCTGTGAAGGA
GTAGATGGCAGCTTTCTGGTCTCTCTCTTGTTCTTTCCGTCTCTTTCTTT
TCCTTCCGATGCATGTTTCTGATCATGATTCATTCACGCGCTCTCCCCAC
CTGGTTAAGGTTAAGCTTGCGATGCCGTTTACGTTGAAGAAGCAATTGGT
AGATGACTGGGAGATGGTTACACG
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Synonyms
Publications