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Properties
| Property Name | Value |
|---|
| TranscriptId | 593451 |
| Track | FilteredModels2 |
| ProteinId | 593365 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:233254..234942 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5977 ID=mRNA_5977|Name=jgi.p|Nanoce1779_2|593365|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp
CACACACAGACCCACTTCACCTCCCGTCAGTCAACCATGTTCAAGATCAC
CATCACCTGCGCCTTCCTTATGGCCCTGGCCTCCGTCCATGCCTTCCTCC
CCATGCCTTGTCGCATGCCCACCAACATGAAGGTCGGGCAGTCCTCCTCC
ACGGGCCGTAGCAAGAGCATCGGCATCATCAATTCCATGCGCGAGAACAT
CGAGGGCGAGCCCAACCCCACCCAGATCATGGTGTCCAACCTCCCGTTCG
ACACCTCCACCGAGGAACTCGAGGCCTTCGCCGCCCAAGCCGGGCAAGTC
GTCAACGTCAAGATTATTCTCGACAAAGAGACGGGCCGCAGCAAGGGTTA
CGGCTTCGTGTTGTTCACTGAGCCCTTGTCTGCTACTTACGCTCTCGAGC
GATTGGACGGGATGGAGCTTGGTGGCCGCCCCTTGAAGATTCGCCCGGCT
ATCAGGAAAACCTACCCCAACACCCGTGGGGGTGGGTATGGCGGGAACAA
CAACAACTACTAAAATTGAAATTGAAGAAGGAGAAGAGGGAAGGAAGGAG
GGAGGAGGGAGGGGTCTGTGGCCAGTGGGAGTTGATTTTGTGAAGTGGCC
CGGGTGATGACGTGTGCGGGGGAGGCTGGTTGCACGCAGTATGTGTGTGT
CGTCCTTCGAGGATTTTCCTCTCTCTCTTTAACCCTGGCAAAGAGGGAAG
GGTTGAGGAAGGGGAGGCGGAACTGTAGCGAGCAGAAAGAGGGTTCTGTA
GGTTGGAATTGCTCATGTGCAGAAGGCACATACCACATGGAGGAGGGAAG
GCGGGAGAGAGGGAGAGAGGGGGGGAATGCCACTCCCTTCCCCTTGAGAG
TAAAGGCATTGAAGAAATGGAGATCGAAGTTTTAATTACTACTAATTCTA
TTTATTCAGCTGGAGAAAAGAACAGATGTAACATATGGATCGTCGCGTTT
CTAAAAACCAAGCAAGCAATCAGAAATAAGGAAGAAGGGAGGGGTGAAGG
GAGAGATAGAGGGAGCGAAGGCTGGGGGGAGGTCTCTAGACACGAACATG
AGAGAAAGGGAGGAGAAGATGAAGATAAGTATGAGGAGGAAGAGCTGGAG
TCCAATGACAATGTCGAGATGTGTGAAAGAGGGAGTGAAATAACATGAGT
GTGGAAAGAGATCAGCGACAGCGTCAGCAGCCCAGAGGGAAACCAGTCAT
ACAGATGATAATATTCACTGCAGCTGGCAGGCAGCAGCATCAGCAGCAGT
AAGAAGCAAGGACCTCAACAAACAATCACCGGAAAGAGACAGAGGAAGAA
CAAGAAGAAGAAGAAGAAATCTGTCATCCCAGG back to topprotein sequence of jgi.p|Nanoce1779_2|593365 >mRNA_5977-protein ID=mRNA_5977-protein|Name=jgi.p|Nanoce1779_2|593365|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MFKITITCAFLMALASVHAFLPMPCRMPTNMKVGQSSSTGRSKSIGIINS
MRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETG
RSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGG
YGGNNNNY* back to topmRNA from alignment at scaffold_14:233254..234942+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5977 ID=mRNA_5977|Name=jgi.p|Nanoce1779_2|593365|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_14:233254..234942+ (Nannochloropsis oceanica)
CACACACAGACCCACTTCACCTCCCGTCAGTCAACCATGTTCAAGATCAC
CATCACCTGCGCCTTCCTTATGGCCCTGGCCTCCGTCCATGCCTTCCTCC
CCATGCCTTGTCGCATGCCCACCAACATGAAGGTCGGGCAGTCCTCCTCC
ACGGGCCGTAGCAAGAGCATCGGCATCATCAATTCCATGCGCGAGAACAT
CGAGGGCGAGCCCAACCCCACCCAGGTATGTCTCGTCTTCGTACGCGAGC
GGGTGGTGGAGAGGGAGAGGAGGGGAGTGAGGGGAAAACACACAGTCAGA
AAATCGAGGCAGATGTGCTAGGATACGGGAATGCAGTGTATGTGCCCCCA
TTCTTGCGCTGATCTGTAGGGTGTGGAGTGCATTGTTTTCCTCACTTCCG
TTCTGACGTAGCCATGACTCTCACCCGTCGTGCTTTGTTCCTCCACCGCA
CACGTTCAACCTCACTCCTCCCTCTCGTTCTCCTTCACTTACCAGAAGAT
CTTTGTTCTGAGCTGCCAGTTACCCCTATTCATCTCTATTCCTATCTTTC
TTCCTCCCTCCCTCCCTCCCGCCTCCCTCAGATCATGGTGTCCAACCTCC
CGTTCGACACCTCCACCGAGGAACTCGAGGCCTTCGCCGCCCAAGCCGGG
CAAGTCGTCAACGTCAAGATTATTCTCGACAAAGAGACGGGCCGCAGCAA
GGGTTACGGCTTCGTGTTGTTCACTGAGCCCTTGTCTGCTACTTACGCTC
TCGAGCGATTGGACGGGATGGAGCTTGGTGGCCGCCCCTTGAAGATTCGC
CCGGCTATCAGGAAAACCTACCCCAACACCCGTGGGGGTGGGTATGGCGG
GAACAACAACAACTACTAAAATTGAAATTGAAGAAGGAGAAGAGGGAAGG
AAGGAGGGAGGAGGGAGGGGTCTGTGGCCAGTGGGAGTTGATTTTGTGAA
GTGGCCCGGGTGATGACGTGTGCGGGGGAGGCTGGTTGCACGCAGTATGT
GTGTGTCGTCCTTCGAGGATTTTCCTCTCTCTCTTTAACCCTGGCAAAGA
GGGAAGGGTTGAGGAAGGGGAGGCGGAACTGTAGCGAGCAGAAAGAGGGT
TCTGTAGGTTGGAATTGCTCATGTGCAGAAGGCACATACCACATGGAGGA
GGGAAGGCGGGAGAGAGGGAGAGAGGGGGGGAATGCCACTCCCTTCCCCT
TGAGAGTAAAGGCATTGAAGAAATGGAGATCGAAGTTTTAATTACTACTA
ATTCTATTTATTCAGCTGGAGAAAAGAACAGATGTAACATATGGATCGTC
GCGTTTCTAAAAACCAAGCAAGCAATCAGAAATAAGGAAGAAGGGAGGGG
TGAAGGGAGAGATAGAGGGAGCGAAGGCTGGGGGGAGGTCTCTAGACACG
AACATGAGAGAAAGGGAGGAGAAGATGAAGATAAGTATGAGGAGGAAGAG
CTGGAGTCCAATGACAATGTCGAGATGTGTGAAAGAGGGAGTGAAATAAC
ATGAGTGTGGAAAGAGATCAGCGACAGCGTCAGCAGCCCAGAGGGAAACC
AGTCATACAGATGATAATATTCACTGCAGCTGGCAGGCAGCAGCATCAGC
AGCAGTAAGAAGCAAGGACCTCAACAAACAATCACCGGAAAGAGACAGAG
GAAGAACAAGAAGAAGAAGAAGAAATCTGTCATCCCAGG back to topCoding sequence (CDS) from alignment at scaffold_14:233254..234942+ >mRNA_5977 ID=mRNA_5977|Name=jgi.p|Nanoce1779_2|593365|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_14:233254..234942+ (Nannochloropsis oceanica)
ATGTTCAAGATCACCATCACCTGCGCCTTCCTTATGGCCCTGGCCTCCGT
CCATGCCTTCCTCCCCATGCCTTGTCGCATGCCCACCAACATGAAGGTCG
GGCAGTCCTCCTCCACGGGCCGTAGCAAGAGCATCGGCATCATCAATTCC
ATGCGCGAGAACATCGAGGGCGAGCCCAACCCCACCCAGATCATGGTGTC
CAACCTCCCGTTCGACACCTCCACCGAGGAACTCGAGGCCTTCGCCGCCC
AAGCCGGGCAAGTCGTCAACGTCAAGATTATTCTCGACAAAGAGACGGGC
CGCAGCAAGGGTTACGGCTTCGTGTTGTTCACTGAGCCCTTGTCTGCTAC
TTACGCTCTCGAGCGATTGGACGGGATGGAGCTTGGTGGCCGCCCCTTGA
AGATTCGCCCGGCTATCAGGAAAACCTACCCCAACACCCGTGGGGGTGGG
TATGGCGGGAACAACAACAACTACTAAATGTTCAAGATCACCATCACCTG
CGCCTTCCTTATGGCCCTGGCCTCCGTCCATGCCTTCCTCCCCATGCCTT
GTCGCATGCCCACCAACATGAAGGTCGGGCAGTCCTCCTCCACGGGCCGT
AGCAAGAGCATCGGCATCATCAATTCCATGCGCGAGAACATCGAGGGCGA
GCCCAACCCCACCCAGATCATGGTGTCCAACCTCCCGTTCGACACCTCCA
CCGAGGAACTCGAGGCCTTCGCCGCCCAAGCCGGGCAAGTCGTCAACGTC
AAGATTATTCTCGACAAAGAGACGGGCCGCAGCAAGGGTTACGGCTTCGT
GTTGTTCACTGAGCCCTTGTCTGCTACTTACGCTCTCGAGCGATTGGACG
GGATGGAGCTTGGTGGCCGCCCCTTGAAGATTCGCCCGGCTATCAGGAAA
ACCTACCCCAACACCCGTGGGGGTGGGTATGGCGGGAACAACAACAACTA
CTAA back to top
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