jgi.p|Nanoce1779_2|78111, mRNA_5975 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|78111
Unique Name	mRNA_5975
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1579
Alignment location	scaffold_14:225890..227870 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	78197
Track	FilteredModels2
ProteinId	78111

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:225890..227870 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|78111	gene_5975	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|78111	mRNA_5975-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5975	CDS_5975	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:225890..227870+
coding sequence from alignment at scaffold_14:225890..227870+

mRNA sequence

>mRNA_5975 ID=mRNA_5975|Name=jgi.p|Nanoce1779_2|78111|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp
GGCTTGCCGCATCATTTCTCGGACACTGTCCCCCATGGTGTGGCTTGTAG
CATGCGAAAGCCCGCGCGTCTGTGTGAGGAGGAAGGGGGCAGGCAACATA
TGTGAGGATAATGCTGCTACCTAATAGAAGGAGCATTTTAAGCCCTACAG
GCAGCAAAGCGCGCTGGTGTCCAGGATGAGAAGAGTCTGGACAAAGCGCC
AATGTGGCCGTCTCAGTGCATGGGCGGTGCATGGACTGAGAAAGAGTAGA
GCTTCAGACTTGTTGTGGAGGGAGGGTCGGCGAGCATGTCAGTCGCGGCT
ACGAGGGGAATGCGCGCTGGCCTCTCGTAGCTTGAAGACGTCCACACCCT
CGCTCTGCGCCAAATGCCTGTGCATGAGTGTGCATGACATGCGACCACAA
CCACTGCAACCACATTGCGTGACCTTCATTTTCAGCGTCATGGGCGGACT
CTTTTGCCTGGTACTCCTCCTTCCTGCAGCAACAGATGCTTTTCTCCTCA
TACCACACCTCAAGCAACAGCACCTGCAAAGGCCCCTTGCCAAGACCTAT
CAGAAGCACCCAAGACACCTTCAGAGCTTGCTAACATATCTAAACACCGG
ATCAATCACTCTCTTATCCGCGGCCACGGCAGACGTGCACCAAGGGACTT
CTTCCTCCTCCTCCTCCAACTCTACCGAGGACCTCGTGGTACTCACCCGC
GAAGCCGGCAAGAATGACAAGCTTCGCAAACTTTTGGAAGCACGAGAGTT
CAATATCTTAGAGCTTCCATGTATTGCGCACTGCCATGCAGAGGGCCATG
CCCAGCTGCAACAAACATTGGAGACGCAGGTGTTTGACTACATCGTCATC
ACGTCACCAGAGGCCGCACAAGTCTTTCTAGAAGTTGCACAGACATGTCC
CACCTACAAACCGACGAATCTTGTTCCGATCGGCGAAGCGACAGGCGTGC
TGTTGAAAAAAGCAGGAGCAGGCATAAAATTCACGCCGTCAAAGGCCCTT
GCGAAAGTGCTTGCTGTGGAGCTACCAGAGATGGAGGAAGAGAAAGTGGG
AGGGAAAGAGGGAGGCATGAAGTCGAGAAGAACGGCAAGAGTACTTTATC
CGGCGTCTAAACGAGCGGCGCATACGTTGGAAGACGGATTGTATGCTAGG
GGTGTGTGCGAGGAGGGGGAAAGAGAGGCGCAGGGAGAGAGGGAGGGAGG
AAGCAGGTTGTTTGAGGTGACCAGGCTTAATACATATGACACAGTTCCTG
CAGAATGGAGTGAAGCCGACGAATCAAGAGCCAAAGCATGCAGAGTCGTA
ACATTCGCGAGTCCGAGTGCTCTAAAGGTTTGGGCATCGCGGGTAGGCAT
GGAGTTTAACGTGGCCTGTATTGGGGAAACGACAGCGACAGCAGCAAGGC
AGGCGGGCTGGAAGGAAGAGAGGATTTTTTATCCGAGGGAAGCACCAGGG
ATTGAGGGATGGGCAGCGGCGGTGGAAGAAGCTTTACAGGGATGAAGGGG
TTAGGGGTCAGGGTAGGGGTCGGGGAGGTTCATCACGTGCGGAGGAGTAC
AGGGGCAAATAATAAAGTAAATGGATTGC

protein sequence of jgi.p|Nanoce1779_2|78111

>mRNA_5975-protein ID=mRNA_5975-protein|Name=jgi.p|Nanoce1779_2|78111|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRRVWTKRQCGRLSAWAVHGLRKSRASDLLWREGRRACQSRLRGECALAS
RSLKTSTPSLCAKCLCMSVHDMRPQPLQPHCVTFIFSVMGGLFCLVLLLP
AATDAFLLIPHLKQQHLQRPLAKTYQKHPRHLQSLLTYLNTGSITLLSAA
TADVHQGTSSSSSSNSTEDLVVLTREAGKNDKLRKLLEAREFNILELPCI
AHCHAEGHAQLQQTLETQVFDYIVITSPEAAQVFLEVAQTCPTYKPTNLV
PIGEATGVLLKKAGAGIKFTPSKALAKVLAVELPEMEEEKVGGKEGGMKS
RRTARVLYPASKRAAHTLEDGLYARGVCEEGEREAQGEREGGSRLFEVTR
LNTYDTVPAEWSEADESRAKACRVVTFASPSALKVWASRVGMEFNVACIG
ETTATAARQAGWKEERIFYPREAPGIEGWAAAVEEALQG*

mRNA from alignment at scaffold_14:225890..227870+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5975 ID=mRNA_5975|Name=jgi.p|Nanoce1779_2|78111|organism=Nannochloropsis oceanica|type=mRNA|length=1981bp|location=Sequence derived from alignment at scaffold_14:225890..227870+ (Nannochloropsis oceanica)
GGCTTGCCGCATCATTTCTCGGACACTGTCCCCCATGGTGTGGCTTGTAG
CATGCGAAAGCCCGCGCGTCTGTGTGAGGAGGAAGGGGGCAGGCAACATA
TGTGAGGATAATGCTGCTACCTAATAGAAGGAGCATTTTAAGCCCTACAG
GCAGCAAAGCGCGCTGGTGTCCAGGATGAGAAGAGTCTGGACAAAGCGCC
AATGTGGCCGTCTCAGTGCATGGGCGGTGCATGGACTGAGAAAGAGTAGA
GCTTCAGACTTGTTGTGGAGGGAGGGTCGGCGAGCATGTCAGTCGCGGCT
ACGAGGGGAATGCGCGCTGGCCTCTCGTAGCTTGAAGACGTCCACACCCT
CGCTCTGCGCCAAATGCCTGTGCATGAGTGTGCATGGTAAGTTTCGTAAA
GCGATCACATACGACACACAAAAAATGTTCCCTCGTCGTCTCGGGCCGAC
CTCCTCTTGGGGGGAAATCGGTCATCTTTGCACACCGTAACCAAAAGAGC
CCTTTTTCTAAAGCATTACAAAATCACACACAGACATGCGACCACAACCA
CTGCAACCACATTGCGTGACCTTCATTTTCAGCGTCATGGGCGGACTCTT
TTGCCTGGTACTCCTCCTTCCTGCAGCAACAGATGCTTTTCTCCTCATAC
CACACCTCAAGCAACAGCACCTGCAAAGGCCCCTTGCCAAGACCTATCAG
AAGCACCCAAGACACCTTCAGAGCTTGCTAACATATCTAAACACCGGATC
AATCACTCTCTTATCCGCGGCCACGGCAGACGTGCACCAAGGGACTTCTT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAACTCTACCGA
GGACCTCGTGGTACTCACCCGCGAAGCCGGCAAGAATGACAAGCTTCGCA
AACTTTTGGAAGCACGAGAGTTCAATATCTTAGAGCTTCCATGTATTGCG
CACTGCCATGCAGAGGGCCATGCCCAGCTGCAACAAACATTGGAGACGCA
GGTGTTTGACTACATCGTCATCACGTCACCAGAGGTGAGAGTGATGGAGA
GGGAGGCACAGCAGAAGGAATAGTCCTTACTAGAAAGTAGCAGAAATAAT
GCCATTGCCACATGTGGAGTGGCACGTCTCCTGGCAAAGACAAGAAGCTC
ACCGTCTCTCCACTCCATTTCTCCACCCCTCCCCTCCTTGCCCCCCCCCT
TCCCTCTCTCTCAGGCCGCACAAGTCTTTCTAGAAGTTGCACAGACATGT
CCCACCTACAAACCGACGAATCTTGTTCCGATCGGCGAAGCGACAGGCGT
GCTGTTGAAAAAAGCAGGAGCAGGCATAAAATTCACGCCGTCAAAGGCCC
TTGCGAAAGTGCTTGCTGTGGAGCTACCAGAGATGGAGGAAGAGAAAGTG
GGAGGGAAAGAGGGAGGCATGAAGTCGAGAAGAACGGCAAGAGTACTTTA
TCCGGCGTCTAAACGAGCGGCGCATACGTTGGAAGACGGATTGTATGCTA
GGGGTGTGTGCGAGGAGGGGGAAAGAGAGGCGCAGGGAGAGAGGGAGGGA
GGAAGCAGGTTGTTTGAGGTGACCAGGCTTAATACATATGACACAGTTCC
TGCAGAATGGAGTGAAGCCGACGAATCAAGAGCCAAAGCATGCAGAGTCG
TAACATTCGCGAGTCCGAGTGCTCTAAAGGTTTGGGCATCGCGGGTAGGC
ATGGAGTTTAACGTGGCCTGTATTGGGGAAACGACAGCGACAGCAGCAAG
GCAGGCGGGCTGGAAGGAAGAGAGGATTTTTTATCCGAGGGAAGCACCAG
GGATTGAGGGATGGGCAGCGGCGGTGGAAGAAGCTTTACAGGGATGAAGG
GGTTAGGGGTCAGGGTAGGGGTCGGGGAGGTTCATCACGTGCGGAGGAGT
ACAGGGGCAAATAATAAAGTAAATGGATTGC

Coding sequence (CDS) from alignment at scaffold_14:225890..227870+

>mRNA_5975 ID=mRNA_5975|Name=jgi.p|Nanoce1779_2|78111|organism=Nannochloropsis oceanica|type=CDS|length=5280bp|location=Sequence derived from alignment at scaffold_14:225890..227870+ (Nannochloropsis oceanica)
ATGAGAAGAGTCTGGACAAAGCGCCAATGTGGCCGTCTCAGTGCATGGGC
GGTGCATGGACTGAGAAAGAGTAGAGCTTCAGACTTGTTGTGGAGGGAGG
GTCGGCGAGCATGTCAGTCGCGGCTACGAGGGGAATGCGCGCTGGCCTCT
CGTAGCTTGAAGACGTCCACACCCTCGCTCTGCGCCAAATGCCTGTGCAT
GAGTGTGCATGACATGCGACCACAACCACTGCAACCACATTGCGTGACCT
TCATTTTCAGCGTCATGGGCGGACTCTTTTGCCTGGTACTCCTCCTTCCT
GCAGCAACAGATGCTTTTCTCCTCATACCACACCTCAAGCAACAGCACCT
GCAAAGGCCCCTTGCCAAGACCTATCAGAAGCACCCAAGACACCTTCAGA
GCTTGCTAACATATCTAAACACCGGATCAATCACTCTCTTATCCGCGGCC
ACGGCAGACGTGCACCAAGGGACTTCTTCCTCCTCCTCCTCCAACTCTAC
CGAGGACCTCGTGGTACTCACCCGCGAAGCCGGCAAGAATGACAAGCTTC
GCAAACTTTTGGAAGCACGAGAGTTCAATATCTTAGAGCTTCCATGTATT
GCGCACTGCCATGCAGAGGGCCATGCCCAGCTGCAACAAACATTGGAGAC
GCAGGTGTTTGACTACATCGTCATCACGTCACCAGAGGCCGCACAAGTCT
TTCTAGAAGTTGCACAGACATGTCCCACCTACAAACCGACGAATCTTGTT
CCGATCGGCGAAGCGACAGGCGTGCTGTTGAAAAAAGCAGGAGCAGGCAT
AAAATTCACGCCGTCAAAGGCCCTTGCGAAAGTGCTTGCTGTGGAGCTAC
CAGAGATGGAGGAAGAGAAAGTGGGAGGGAAAGAGGGAGGCATGAAGTCG
AGAAGAACGGCAAGAGTACTTTATCCGGCGTCTAAACGAGCGGCGCATAC
GTTGGAAGACGGATTGTATGCTAGGGGTGTGTGCGAGGAGGGGGAAAGAG
AGGCGCAGGGAGAGAGGGAGGGAGGAAGCAGGTTGTTTGAGGTGACCAGG
CTTAATACATATGACACAGTTCCTGCAGAATGGAGTGAAGCCGACGAATC
AAGAGCCAAAGCATGCAGAGTCGTAACATTCGCGAGTCCGAGTGCTCTAA
AGGTTTGGGCATCGCGGGTAGGCATGGAGTTTAACGTGGCCTGTATTGGG
GAAACGACAGCGACAGCAGCAAGGCAGGCGGGCTGGAAGGAAGAGAGGAT
TTTTTATCCGAGGGAAGCACCAGGGATTGAGGGATGGGCAGCGGCGGTGG
AAGAAGCTTTACAGGGATGAATGAGAAGAGTCTGGACAAAGCGCCAATGT
GGCCGTCTCAGTGCATGGGCGGTGCATGGACTGAGAAAGAGTAGAGCTTC
AGACTTGTTGTGGAGGGAGGGTCGGCGAGCATGTCAGTCGCGGCTACGAG
GGGAATGCGCGCTGGCCTCTCGTAGCTTGAAGACGTCCACACCCTCGCTC
TGCGCCAAATGCCTGTGCATGAGTGTGCATGACATGCGACCACAACCACT
GCAACCACATTGCGTGACCTTCATTTTCAGCGTCATGGGCGGACTCTTTT
GCCTGGTACTCCTCCTTCCTGCAGCAACAGATGCTTTTCTCCTCATACCA
CACCTCAAGCAACAGCACCTGCAAAGGCCCCTTGCCAAGACCTATCAGAA
GCACCCAAGACACCTTCAGAGCTTGCTAACATATCTAAACACCGGATCAA
TCACTCTCTTATCCGCGGCCACGGCAGACGTGCACCAAGGGACTTCTTCC
TCCTCCTCCTCCAACTCTACCGAGGACCTCGTGGTACTCACCCGCGAAGC
CGGCAAGAATGACAAGCTTCGCAAACTTTTGGAAGCACGAGAGTTCAATA
TCTTAGAGCTTCCATGTATTGCGCACTGCCATGCAGAGGGCCATGCCCAG
CTGCAACAAACATTGGAGACGCAGGTGTTTGACTACATCGTCATCACGTC
ACCAGAGGCCGCACAAGTCTTTCTAGAAGTTGCACAGACATGTCCCACCT
ACAAACCGACGAATCTTGTTCCGATCGGCGAAGCGACAGGCGTGCTGTTG
AAAAAAGCAGGAGCAGGCATAAAATTCACGCCGTCAAAGGCCCTTGCGAA
AGTGCTTGCTGTGGAGCTACCAGAGATGGAGGAAGAGAAAGTGGGAGGGA
AAGAGGGAGGCATGAAGTCGAGAAGAACGGCAAGAGTACTTTATCCGGCG
TCTAAACGAGCGGCGCATACGTTGGAAGACGGATTGTATGCTAGGGGTGT
GTGCGAGGAGGGGGAAAGAGAGGCGCAGGGAGAGAGGGAGGGAGGAAGCA
GGTTGTTTGAGGTGACCAGGCTTAATACATATGACACAGTTCCTGCAGAA
TGGAGTGAAGCCGACGAATCAAGAGCCAAAGCATGCAGAGTCGTAACATT
CGCGAGTCCGAGTGCTCTAAAGGTTTGGGCATCGCGGGTAGGCATGGAGT
TTAACGTGGCCTGTATTGGGGAAACGACAGCGACAGCAGCAAGGCAGGCG
GGCTGGAAGGAAGAGAGGATTTTTTATCCGAGGGAAGCACCAGGGATTGA
GGGATGGGCAGCGGCGGTGGAAGAAGCTTTACAGGGATGAATGAGAAGAG
TCTGGACAAAGCGCCAATGTGGCCGTCTCAGTGCATGGGCGGTGCATGGA
CTGAGAAAGAGTAGAGCTTCAGACTTGTTGTGGAGGGAGGGTCGGCGAGC
ATGTCAGTCGCGGCTACGAGGGGAATGCGCGCTGGCCTCTCGTAGCTTGA
AGACGTCCACACCCTCGCTCTGCGCCAAATGCCTGTGCATGAGTGTGCAT
GACATGCGACCACAACCACTGCAACCACATTGCGTGACCTTCATTTTCAG
CGTCATGGGCGGACTCTTTTGCCTGGTACTCCTCCTTCCTGCAGCAACAG
ATGCTTTTCTCCTCATACCACACCTCAAGCAACAGCACCTGCAAAGGCCC
CTTGCCAAGACCTATCAGAAGCACCCAAGACACCTTCAGAGCTTGCTAAC
ATATCTAAACACCGGATCAATCACTCTCTTATCCGCGGCCACGGCAGACG
TGCACCAAGGGACTTCTTCCTCCTCCTCCTCCAACTCTACCGAGGACCTC
GTGGTACTCACCCGCGAAGCCGGCAAGAATGACAAGCTTCGCAAACTTTT
GGAAGCACGAGAGTTCAATATCTTAGAGCTTCCATGTATTGCGCACTGCC
ATGCAGAGGGCCATGCCCAGCTGCAACAAACATTGGAGACGCAGGTGTTT
GACTACATCGTCATCACGTCACCAGAGGCCGCACAAGTCTTTCTAGAAGT
TGCACAGACATGTCCCACCTACAAACCGACGAATCTTGTTCCGATCGGCG
AAGCGACAGGCGTGCTGTTGAAAAAAGCAGGAGCAGGCATAAAATTCACG
CCGTCAAAGGCCCTTGCGAAAGTGCTTGCTGTGGAGCTACCAGAGATGGA
GGAAGAGAAAGTGGGAGGGAAAGAGGGAGGCATGAAGTCGAGAAGAACGG
CAAGAGTACTTTATCCGGCGTCTAAACGAGCGGCGCATACGTTGGAAGAC
GGATTGTATGCTAGGGGTGTGTGCGAGGAGGGGGAAAGAGAGGCGCAGGG
AGAGAGGGAGGGAGGAAGCAGGTTGTTTGAGGTGACCAGGCTTAATACAT
ATGACACAGTTCCTGCAGAATGGAGTGAAGCCGACGAATCAAGAGCCAAA
GCATGCAGAGTCGTAACATTCGCGAGTCCGAGTGCTCTAAAGGTTTGGGC
ATCGCGGGTAGGCATGGAGTTTAACGTGGCCTGTATTGGGGAAACGACAG
CGACAGCAGCAAGGCAGGCGGGCTGGAAGGAAGAGAGGATTTTTTATCCG
AGGGAAGCACCAGGGATTGAGGGATGGGCAGCGGCGGTGGAAGAAGCTTT
ACAGGGATGAATGAGAAGAGTCTGGACAAAGCGCCAATGTGGCCGTCTCA
GTGCATGGGCGGTGCATGGACTGAGAAAGAGTAGAGCTTCAGACTTGTTG
TGGAGGGAGGGTCGGCGAGCATGTCAGTCGCGGCTACGAGGGGAATGCGC
GCTGGCCTCTCGTAGCTTGAAGACGTCCACACCCTCGCTCTGCGCCAAAT
GCCTGTGCATGAGTGTGCATGACATGCGACCACAACCACTGCAACCACAT
TGCGTGACCTTCATTTTCAGCGTCATGGGCGGACTCTTTTGCCTGGTACT
CCTCCTTCCTGCAGCAACAGATGCTTTTCTCCTCATACCACACCTCAAGC
AACAGCACCTGCAAAGGCCCCTTGCCAAGACCTATCAGAAGCACCCAAGA
CACCTTCAGAGCTTGCTAACATATCTAAACACCGGATCAATCACTCTCTT
ATCCGCGGCCACGGCAGACGTGCACCAAGGGACTTCTTCCTCCTCCTCCT
CCAACTCTACCGAGGACCTCGTGGTACTCACCCGCGAAGCCGGCAAGAAT
GACAAGCTTCGCAAACTTTTGGAAGCACGAGAGTTCAATATCTTAGAGCT
TCCATGTATTGCGCACTGCCATGCAGAGGGCCATGCCCAGCTGCAACAAA
CATTGGAGACGCAGGTGTTTGACTACATCGTCATCACGTCACCAGAGGCC
GCACAAGTCTTTCTAGAAGTTGCACAGACATGTCCCACCTACAAACCGAC
GAATCTTGTTCCGATCGGCGAAGCGACAGGCGTGCTGTTGAAAAAAGCAG
GAGCAGGCATAAAATTCACGCCGTCAAAGGCCCTTGCGAAAGTGCTTGCT
GTGGAGCTACCAGAGATGGAGGAAGAGAAAGTGGGAGGGAAAGAGGGAGG
CATGAAGTCGAGAAGAACGGCAAGAGTACTTTATCCGGCGTCTAAACGAG
CGGCGCATACGTTGGAAGACGGATTGTATGCTAGGGGTGTGTGCGAGGAG
GGGGAAAGAGAGGCGCAGGGAGAGAGGGAGGGAGGAAGCAGGTTGTTTGA
GGTGACCAGGCTTAATACATATGACACAGTTCCTGCAGAATGGAGTGAAG
CCGACGAATCAAGAGCCAAAGCATGCAGAGTCGTAACATTCGCGAGTCCG
AGTGCTCTAAAGGTTTGGGCATCGCGGGTAGGCATGGAGTTTAACGTGGC
CTGTATTGGGGAAACGACAGCGACAGCAGCAAGGCAGGCGGGCTGGAAGG
AAGAGAGGATTTTTTATCCGAGGGAAGCACCAGGGATTGAGGGATGGGCA
GCGGCGGTGGAAGAAGCTTTACAGGGATGA

Synonyms

Publications