jgi.p|Nanoce1779_2|593339, mRNA_5974 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593339
Unique NamemRNA_5974
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1185
Alignment locationscaffold_14:224261..225445 -

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Properties
Property NameValue
TranscriptId593425
TrackFilteredModels2
ProteinId593339
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:224261..225445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593339gene_5974Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593339mRNA_5974-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5974CDS_5974Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5974 ID=mRNA_5974|Name=jgi.p|Nanoce1779_2|593339|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
TCCCTCCCCCCCCCCGCGCCCCGTCCTTCCTCACAATCCATGATGCCTCC
CCCTCCTCCTCCAAAAGCCCCGGGCGCCATGCCCCCACTTCCTCAACCGG
AGAAGAAAAAAATCGTCGTTGCCTCCTTTCCCTCGTCAATGCCCCCCCCT
CCACCACCACAAGCACGTTCACCTGCTCCTCCGCCTGTGGCTGCTGCTCC
TCCGCCTGTAGCTGCTGCTCCGGCTGCCCCTGGTGCTCATCCCACTCCTC
ATCGTTCGGCCGCAGCGAGATCGACTGGTATGCTCCCAGGTTTTGAACCC
GTAGACTCTGATGACGAGGACGAGGACGAGAAAGGGATGGCGAAAACGGC
TGTGGACGTGCCTGCCGCCTTGCCCCCGGGCTTCTTTGACAGCGGCATGG
AAGAAGAGGGAGCGGAAGAGGAGGAAGGGGACGAAGAGAATGAACCTTTG
CCCATCCCCCCTCATTCTCCATCTTCTCATCCTCCTCCTCCTCCCTCTAC
AAACGACACCACTGCATTACCCACCGGCTTCTTCGATGACCCGGATGCAG
ACGCCGCTGCTCACAACATCGATCTTGTCGCACAAAAAGAAGCAGCAGTT
AAAGCTGAATGGGAGGAGTTTCAAAAATTTGCGGCTGCCGTCGTCATGTC
GGAGGCTGATCAGGAAGCTGAAGAGGAGGCGGAGAGGGAGGAGGAGGAGC
AGAGGAAGGAGCTGGAACACATGTATTATACTGCGAGGCTGGCAGGGTTG
ATGGCTACGTCGGGGGAGGCGGCGGGAAGGAGAGGGAAGAAGGGAGAGAG
AAATAGGGGGCAAGAGAAAGAGGGGGGAGGGAGGGAGGATGCGTTGGCTG
CTATTGAAGGGGTACCGTCGAAGAGGGAGGCCCCGGCGCTGGTGGCTGGT
GCTGTGGAGGACGAGGGAGAGGAAGAGCGTGAGGGGGAAGTGAAGAGGAG
GGATGTTCAAGGTGGAGGAGGGGGGGAGAGTGCGTCGTTTGAGATCTCGG
CCATGCTTCGGGCAAAAAAGAAGCGGAAAAAGGAGGTGATGGAAGAGGCC
TTTGAGAAGGATTACGTCCCTTTTGATCCTTTGGATTGGCGGGCAAAGAC
ATTCGGTTGACGGCTTCTTGAAGCGGATATGGACGTTCAATGCTCTTATC
AACTCTTAAGGTCATTAAATCTTTTAGAATCCACA
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protein sequence of jgi.p|Nanoce1779_2|593339

>mRNA_5974-protein ID=mRNA_5974-protein|Name=jgi.p|Nanoce1779_2|593339|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MMPPPPPPKAPGAMPPLPQPEKKKIVVASFPSSMPPPPPPQARSPAPPPV
AAAPPPVAAAPAAPGAHPTPHRSAAARSTGMLPGFEPVDSDDEDEDEKGM
AKTAVDVPAALPPGFFDSGMEEEGAEEEEGDEENEPLPIPPHSPSSHPPP
PPSTNDTTALPTGFFDDPDADAAAHNIDLVAQKEAAVKAEWEEFQKFAAA
VVMSEADQEAEEEAEREEEEQRKELEHMYYTARLAGLMATSGEAAGRRGK
KGERNRGQEKEGGGREDALAAIEGVPSKREAPALVAGAVEDEGEEEREGE
VKRRDVQGGGGGESASFEISAMLRAKKKRKKEVMEEAFEKDYVPFDPLDW
RAKTFG*
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mRNA from alignment at scaffold_14:224261..225445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5974 ID=mRNA_5974|Name=jgi.p|Nanoce1779_2|593339|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_14:224261..225445- (Nannochloropsis oceanica)
TCCCTCCCCCCCCCCGCGCCCCGTCCTTCCTCACAATCCATGATGCCTCC
CCCTCCTCCTCCAAAAGCCCCGGGCGCCATGCCCCCACTTCCTCAACCGG
AGAAGAAAAAAATCGTCGTTGCCTCCTTTCCCTCGTCAATGCCCCCCCCT
CCACCACCACAAGCACGTTCACCTGCTCCTCCGCCTGTGGCTGCTGCTCC
TCCGCCTGTAGCTGCTGCTCCGGCTGCCCCTGGTGCTCATCCCACTCCTC
ATCGTTCGGCCGCAGCGAGATCGACTGGTATGCTCCCAGGTTTTGAACCC
GTAGACTCTGATGACGAGGACGAGGACGAGAAAGGGATGGCGAAAACGGC
TGTGGACGTGCCTGCCGCCTTGCCCCCGGGCTTCTTTGACAGCGGCATGG
AAGAAGAGGGAGCGGAAGAGGAGGAAGGGGACGAAGAGAATGAACCTTTG
CCCATCCCCCCTCATTCTCCATCTTCTCATCCTCCTCCTCCTCCCTCTAC
AAACGACACCACTGCATTACCCACCGGCTTCTTCGATGACCCGGATGCAG
ACGCCGCTGCTCACAACATCGATCTTGTCGCACAAAAAGAAGCAGCAGTT
AAAGCTGAATGGGAGGAGTTTCAAAAATTTGCGGCTGCCGTCGTCATGTC
GGAGGCTGATCAGGAAGCTGAAGAGGAGGCGGAGAGGGAGGAGGAGGAGC
AGAGGAAGGAGCTGGAACACATGTATTATACTGCGAGGCTGGCAGGGTTG
ATGGCTACGTCGGGGGAGGCGGCGGGAAGGAGAGGGAAGAAGGGAGAGAG
AAATAGGGGGCAAGAGAAAGAGGGGGGAGGGAGGGAGGATGCGTTGGCTG
CTATTGAAGGGGTACCGTCGAAGAGGGAGGCCCCGGCGCTGGTGGCTGGT
GCTGTGGAGGACGAGGGAGAGGAAGAGCGTGAGGGGGAAGTGAAGAGGAG
GGATGTTCAAGGTGGAGGAGGGGGGGAGAGTGCGTCGTTTGAGATCTCGG
CCATGCTTCGGGCAAAAAAGAAGCGGAAAAAGGAGGTGATGGAAGAGGCC
TTTGAGAAGGATTACGTCCCTTTTGATCCTTTGGATTGGCGGGCAAAGAC
ATTCGGTTGACGGCTTCTTGAAGCGGATATGGACGTTCAATGCTCTTATC
AACTCTTAAGGTCATTAAATCTTTTAGAATCCACA
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Coding sequence (CDS) from alignment at scaffold_14:224261..225445-

>mRNA_5974 ID=mRNA_5974|Name=jgi.p|Nanoce1779_2|593339|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_14:224261..225445- (Nannochloropsis oceanica)
ATGATGCCTCCCCCTCCTCCTCCAAAAGCCCCGGGCGCCATGCCCCCACT
TCCTCAACCGGAGAAGAAAAAAATCGTCGTTGCCTCCTTTCCCTCGTCAA
TGCCCCCCCCTCCACCACCACAAGCACGTTCACCTGCTCCTCCGCCTGTG
GCTGCTGCTCCTCCGCCTGTAGCTGCTGCTCCGGCTGCCCCTGGTGCTCA
TCCCACTCCTCATCGTTCGGCCGCAGCGAGATCGACTGGTATGCTCCCAG
GTTTTGAACCCGTAGACTCTGATGACGAGGACGAGGACGAGAAAGGGATG
GCGAAAACGGCTGTGGACGTGCCTGCCGCCTTGCCCCCGGGCTTCTTTGA
CAGCGGCATGGAAGAAGAGGGAGCGGAAGAGGAGGAAGGGGACGAAGAGA
ATGAACCTTTGCCCATCCCCCCTCATTCTCCATCTTCTCATCCTCCTCCT
CCTCCCTCTACAAACGACACCACTGCATTACCCACCGGCTTCTTCGATGA
CCCGGATGCAGACGCCGCTGCTCACAACATCGATCTTGTCGCACAAAAAG
AAGCAGCAGTTAAAGCTGAATGGGAGGAGTTTCAAAAATTTGCGGCTGCC
GTCGTCATGTCGGAGGCTGATCAGGAAGCTGAAGAGGAGGCGGAGAGGGA
GGAGGAGGAGCAGAGGAAGGAGCTGGAACACATGTATTATACTGCGAGGC
TGGCAGGGTTGATGGCTACGTCGGGGGAGGCGGCGGGAAGGAGAGGGAAG
AAGGGAGAGAGAAATAGGGGGCAAGAGAAAGAGGGGGGAGGGAGGGAGGA
TGCGTTGGCTGCTATTGAAGGGGTACCGTCGAAGAGGGAGGCCCCGGCGC
TGGTGGCTGGTGCTGTGGAGGACGAGGGAGAGGAAGAGCGTGAGGGGGAA
GTGAAGAGGAGGGATGTTCAAGGTGGAGGAGGGGGGGAGAGTGCGTCGTT
TGAGATCTCGGCCATGCTTCGGGCAAAAAAGAAGCGGAAAAAGGAGGTGA
TGGAAGAGGCCTTTGAGAAGGATTACGTCCCTTTTGATCCTTTGGATTGG
CGGGCAAAGACATTCGGTTGA
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Synonyms
Publications