jgi.p|Nanoce1779_2|593336, mRNA_5973 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593336
Unique NamemRNA_5973
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1258
Alignment locationscaffold_14:222619..224024 -

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Properties
Property NameValue
TranscriptId593422
TrackFilteredModels2
ProteinId593336
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:222619..224024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593336gene_5973Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593336mRNA_5973-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5973CDS_5973Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5973 ID=mRNA_5973|Name=jgi.p|Nanoce1779_2|593336|organism=Nannochloropsis oceanica|type=mRNA|length=1258bp
CAGGTAAAAAGCCAACCCAAGCGGCGCAAGGGCCGTCGTCGTGCGCTGCT
GCCTCCTCTCCTACTCCTACCCCCTAGGCCGCCTGCCCAGGGATAACCAT
GCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCATCCTTT
ATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTCCATGCG
CGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGTTCTACT
AAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCATTTTCCG
TCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCCCCGTTA
CCATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTTTTACGA
AAAGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCTG
CGTACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACGA
TCGCACTGGCTGTCTGTCAAGCAATTTCGTCGCATGTGGCTGCTGTCCTA
CCTCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACTC
TCCTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTTC
TTGACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGCT
CTTTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGGG
GGGCCCCGGCGAGACTGAATCAGATCAGTAAGGTAGGTCTTGGAGAGGTA
GGGAGGGAAAGAGGAAGGGAGGAACGAGTCGGATGCAGGAGTCCTTCGGA
TTTGCTGTATGTGTGTGTGAAGTTTTGAATGTATCTCCGTGCAGCATTTG
CAAGGGCCTCATCGTCCACCCTCCTTCCCTCCCTTCCTCCTCCCCTTCCT
CCCTCCCTCCCTCTACCTCCCAGGTGATGGTTTGGTGGACCATTGGTCGC
ATTATTTGGGGTATTCTCGTCCTCACCACCATCTTACAAGGCTGGTTGAC
CAACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTTGGTCGGCTTGT
TTATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGGATGTGTCGTTG
CTGGCGTCGTTGTCAGCCGAGAGGGGAAGGGGAGGGGAAGGGAGGGAGGG
AGGAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGATTTGGAGGAGG
ACGAGGAC
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protein sequence of jgi.p|Nanoce1779_2|593336

>mRNA_5973-protein ID=mRNA_5973-protein|Name=jgi.p|Nanoce1779_2|593336|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MLILDGLGATPFILAILYLATTFLIASRLRNLHARHRDMNTTKLFVLSVL
LSCTMRCLSFIALGAFSVQSIAIDNNSSGGSSPLPSSSSFDSQDPDTQFY
EKALLILFNLPDFVFVSAYVLLALVWAETFIQSRSHWLSVKQFRRMWLLS
YLIFNACLYLGQLVLYTLLFLPRGNQEFLSKIIFLTLCVINFSLPIILLL
LFFYLSIMFAGFPYKSRGAPARLNQISKVGLGEVGRERGREERVGCRSPS
DLLYVCVKF*
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mRNA from alignment at scaffold_14:222619..224024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5973 ID=mRNA_5973|Name=jgi.p|Nanoce1779_2|593336|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp|location=Sequence derived from alignment at scaffold_14:222619..224024- (Nannochloropsis oceanica)
CAGGTAAAAAGCCAACCCAAGCGGCGCAAGGGCCGTCGTCGTGCGCTGCT
GCCTCCTCTCCTACTCCTACCCCCTAGGCCGCCTGCCCAGGGATAACCAT
GCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCATCCTTT
ATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTCCATGCG
CGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGTTCTACT
AAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCATTTTCCG
TCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCCCCGTTA
CCATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTTTTACGA
AAAGGTAAGGGGTAGCTTGAGGAACCTTTCCCTCTCTCTTTCCTCTCATG
CAACTCGACTGCACGACCTTCCTCCATTGCCATTGCGTGTCATTTCAGCC
TTTGTATTGCCCTCATTATTTTCTTCCTTCATATCCCTTTCCTCTCGCCC
AGGCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCTGCG
TACGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACGATC
GCACTGGCTGTCTGTCAAGCAATTTCGTCGCATGTGGCTGCTGTCCTACC
TCATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACTCTC
CTCTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTTCTT
GACCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGCTCT
TTTTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGGGGG
GCCCCGGCGAGACTGAATCAGATCAGTAAGGTAGGTCTTGGAGAGGTAGG
GAGGGAAAGAGGAAGGGAGGAACGAGTCGGATGCAGGAGTCCTTCGGATT
TGCTGTATGTGTGTGTGAAGTTTTGAATGTATCTCCGTGCAGCATTTGCA
AGGGCCTCATCGTCCACCCTCCTTCCCTCCCTTCCTCCTCCCCTTCCTCC
CTCCCTCCCTCTACCTCCCAGGTGATGGTTTGGTGGACCATTGGTCGCAT
TATTTGGGGTATTCTCGTCCTCACCACCATCTTACAAGGCTGGTTGACCA
ACGCCTACCGAGACCGGCAGGTGTACGGCGTGGTGTTGGTCGGCTTGTTT
ATAATCACGGAATGGATTCCGTTTTTCGTGTCGATGGATGTGTCGTTGCT
GGCGTCGTTGTCAGCCGAGAGGGGAAGGGGAGGGGAAGGGAGGGAGGGAG
GAGAGGTGGGGACGTATGGGACATTATTGGTGCCGGATTTGGAGGAGGAC
GAGGAC
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Coding sequence (CDS) from alignment at scaffold_14:222619..224024-

>mRNA_5973 ID=mRNA_5973|Name=jgi.p|Nanoce1779_2|593336|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_14:222619..224024- (Nannochloropsis oceanica)
GCCCTCCTCATCCTCTTCAACCTCCCCGACTTTGTCTTCGTGTCTGCGTA
CGTCCTCCTCGCCCTTGTCTGGGCCGAGACCTTTATCCAATCACGATCGC
ACTGGCTGTCTGTCAAGCAATTTCGTCGCATGTGGCTGCTGTCCTACCTC
ATCTTCAACGCGTGCCTGTACCTCGGTCAACTCGTGCTGTACACTCTCCT
CTTCCTCCCCAGGGGGAACCAAGAATTCCTCAGCAAGATCATTTTCTTGA
CCTTGTGTGTCATTAACTTCTCCCTGCCCATTATCTTGCTCCTGCTCTTT
TTTTACCTGTCCATTATGTTCGCGGGCTTTCCCTATAAGAGTAGGGGGGC
CCCGGCGAGACTGAATCAGATCAGTAAGGTAGGTCTTGGAGAGGTAGGGA
GGGAAAGAGGAAGGGAGGAACGAGTCGGATGCAGGAGTCCTTCGGATTTG
CTGTATGTGTGTGTGAAGTTTTGAATGCTCATCCTCGATGGCTTGGGCGC
CACACCCTTTATCCTCGCCATCCTTTATCTTGCGACGACTTTCCTCATCG
CCTCCCGTCTCCGCAACCTCCATGCGCGCCATCGCGACATGAACACAACC
AAGCTCTTCGTCTTGTCCGTTCTACTAAGCTGCACCATGCGCTGCCTGAG
CTTCATTGCCCTGGGGGCATTTTCCGTCCAGTCTATAGCCATCGACAACA
ACAGTAGCGGCGGTTCATCCCCGTTACCATCTTCCTCATCTTTTGATTCG
CAGGATCCCGATACCCAGTTTTACGAAAAGGCCCTCCTCATCCTCTTCAA
CCTCCCCGACTTTGTCTTCGTGTCTGCGTACGTCCTCCTCGCCCTTGTCT
GGGCCGAGACCTTTATCCAATCACGATCGCACTGGCTGTCTGTCAAGCAA
TTTCGTCGCATGTGGCTGCTGTCCTACCTCATCTTCAACGCGTGCCTGTA
CCTCGGTCAACTCGTGCTGTACACTCTCCTCTTCCTCCCCAGGGGGAACC
AAGAATTCCTCAGCAAGATCATTTTCTTGACCTTGTGTGTCATTAACTTC
TCCCTGCCCATTATCTTGCTCCTGCTCTTTTTTTACCTGTCCATTATGTT
CGCGGGCTTTCCCTATAAGAGTAGGGGGGCCCCGGCGAGACTGAATCAGA
TCAGTAAGGTAGGTCTTGGAGAGGTAGGGAGGGAAAGAGGAAGGGAGGAA
CGAGTCGGATGCAGGAGTCCTTCGGATTTGCTGTATGTGTGTGTGAAGTT
TTGAATGCTCATCCTCGATGGCTTGGGCGCCACACCCTTTATCCTCGCCA
TCCTTTATCTTGCGACGACTTTCCTCATCGCCTCCCGTCTCCGCAACCTC
CATGCGCGCCATCGCGACATGAACACAACCAAGCTCTTCGTCTTGTCCGT
TCTACTAAGCTGCACCATGCGCTGCCTGAGCTTCATTGCCCTGGGGGCAT
TTTCCGTCCAGTCTATAGCCATCGACAACAACAGTAGCGGCGGTTCATCC
CCGTTACCATCTTCCTCATCTTTTGATTCGCAGGATCCCGATACCCAGTT
TTACGAAAAG
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Synonyms
Publications