jgi.p|Nanoce1779_2|78134, mRNA_5972 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|78134
Unique Name	mRNA_5972
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1679
Alignment location	scaffold_14:220303..222135 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	78220
Track	FilteredModels2
ProteinId	78134

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:220303..222135 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|78134	gene_5972	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|78134	mRNA_5972-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5972	CDS_5972	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:220303..222135+
coding sequence from alignment at scaffold_14:220303..222135+

mRNA sequence

>mRNA_5972 ID=mRNA_5972|Name=jgi.p|Nanoce1779_2|78134|organism=Nannochloropsis oceanica|type=mRNA|length=1679bp
GCGGTGGTGAGAGGTCTGAATAGCAATGCCAAATGCAAGGCATGGAAGGC
TTCTTGCTGGAGCGACAACAACGGCGTCGCCAAGGGCGAGGCTCAAGCAG
CAAGCTAGAGGCAAGGCCGCGCAACGCAGCATTGTCGCCGTCACCGAATG
GAAGTCCAGTGTAGACGTGGATGAGTTGATGCGTGTGATCGTGGGCAAAG
ACACAAATTCAGTCAGCCACTCCCCAATTCTTGACCTGTCGGTCTCTCCT
CCGGGCAGCCGGTAGCATCATTCTTCCTCTGTACAACATGAGGGGGGAGG
GGAGGTCGAAAGGCTTCTCGCATTTACGCGTTTCCGATCACATCACGCCA
CCCACTACAGGATGGAGCCCAAAGAACGTGTGCAAGAGGTGGCGGCAAGG
CAATCTGCCCAGGCGGAGATGGCGGCGCGCCACATCCTTAAGCTTCTTGC
AAATGGAAGGCGTGCATGTCCGCCCCCCAACCCAGGAAGCCGATAACGAG
AGCGAAGTTGATCAAGAGCTCGAGGAGGGCCTCATCTCCCTATTCGCCGT
CGGCGGGGGCGTGGGGAGCGTAAATAGTGATAATGATGACAGTAATACTG
AGGAGAAGGGCCCTACATTTGTCAGCGAGACTTATACACGTCTCGATCCC
AAGGCAGATCCTCCGACGCTGGAACTAAGCCTGGCCGCGGGACGACATAG
TTTGTGGGGTACGTGCTGTGGAGGGACGGATGTAGATCATTGCCCCCTTA
TCTTTCCCTCCCATCTCTATGCATGGATGCAACAGGACACAAAGTCTGGA
ATGCGGCTAAGGTCCTCGGTGAAATGCTCGAACTTGACCCCTCCCTCGTG
CGGGGAAAGACGGTTCTTGAACTCGGCGCGGGATGCGCTCTTCCCTCCCT
CCTGGCTGCATTGAATGGAGCGAAGCATGTGGTTGCCTCTGATTATGCCT
CAAGCACCGACCAAGTCTTGGTGGAGGCCATGCAAAGCAATGTAGATAGA
CTGGTTGAACAAGGGCACGTATCCAAGGGGGCGTTAAGCACGGTGGGCTA
CGTCTGGGGCCAGCCGGTCCACACGCTGCTGGCGCCGTTGGAGGGGATGG
GTGGGGTGGAGGAAGAAGGGAAGGAAGGAAAGAAGAGGCGAAAGTTCGAT
CTTATCATCTGCGCCGACTTGATCTTCAATCGGAGCGAGCATAAAAAGCT
GCTGTGGACTTGCAGGGAGTGCTTGGAGGAGGATGGATCGAAGGAAGTGC
TGGTGGCATATTCGCACCATGATCCGGAGAAGCGGGCGTTGGACCTGGCC
TTCTTTACACTGGCGGAGCAGGAGGGAGGAGGGGAAGGGCCGGGGGAGGG
AGGGGTAGGTGGGTGGGTGGTGGAGGATGTGAGTGTGGAGCAGTGCGTGG
ACTTATTTGTGGAGGGGGATGGGATGGACGAGGAGAGGGGGAAGGTGTAT
GTCAAGCGGTTGACAAGAAGACGGAAGGGGACCGTGGACTGGCCTTCGAG
TGGAGAGTAAAAAAACGTTTTGCTTCAAAAGAGATAGGTCGGGCTGCCTA
TGTCACATGGTGGGGGTTCAGGATGGAAGAGTTCATGGATGCTATTCAAT
TAAAGCATATGGTGTTGCTTGATTTCTTTTATTTGACGGGAGGAGGGCAT
TACTTTATTAACTCTGGCTTTCTGCCAGT

protein sequence of jgi.p|Nanoce1779_2|78134

>mRNA_5972-protein ID=mRNA_5972-protein|Name=jgi.p|Nanoce1779_2|78134|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MDATGHKVWNAAKVLGEMLELDPSLVRGKTVLELGAGCALPSLLAALNGA
KHVVASDYASSTDQVLVEAMQSNVDRLVEQGHVSKGALSTVGYVWGQPVH
TLLAPLEGMGGVEEEGKEGKKRRKFDLIICADLIFNRSEHKKLLWTCREC
LEEDGSKEVLVAYSHHDPEKRALDLAFFTLAEQEGGGEGPGEGGVGGWVV
EDVSVEQCVDLFVEGDGMDEERGKVYVKRLTRRRKGTVDWPSSGE*

mRNA from alignment at scaffold_14:220303..222135+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5972 ID=mRNA_5972|Name=jgi.p|Nanoce1779_2|78134|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at scaffold_14:220303..222135+ (Nannochloropsis oceanica)
GCGGTGGTGAGAGGTCTGAATAGCAATGCCAAATGCAAGGCATGGAAGGC
TTCTTGCTGGAGCGACAACAACGGCGTCGCCAAGGGCGAGGCTCAAGCAG
CAAGCTAGAGGCAAGGCCGCGCAACGCAGCATTGTCGCCGTCACCGAATG
GAAGTCCAGTGTAGACGTGGATGAGTTGATGCGTGTGATCGTGGGCAAAG
ACACAAATTCAGTCAGCCACTCCCCAATTCTTGACCTGTCGGTCTCTCCT
CCGGGCAGCCGGTAGCATCATTCTTCCTCTGTACAACATGAGGGGGGAGG
GGAGGTCGAAAGGCTTCTCGCATTTACGCGTTTCCGATCACATCACGCCA
CCCACTACAGGATGGAGCCCAAAGAACGTGTGCAAGAGGTGGCGGCAAGG
CAATCTGCCCAGGCGGAGATGGCGGCGCGCCACATCCTTAAGGTACGTTG
ACATGATAGCAAGGCAACTCCGACGCCTCCAGCAGAGATACCTTTCTTAA
GCTTCCATTTCTTCCTATCTACTTTCCACCCCAAGGCGTTTTTGAGACGC
CATTTCCTTGGTATTTATTTCATCATCTCTTCACACACCAATAGAGCTTC
TTGCAAATGGAAGGCGTGCATGTCCGCCCCCCAACCCAGGAAGCCGATAA
CGAGAGCGAAGTTGATCAAGAGCTCGAGGAGGGCCTCATCTCCCTATTCG
CCGTCGGCGGGGGCGTGGGGAGCGTAAATAGTGATAATGATGACAGTAAT
ACTGAGGAGAAGGGCCCTACATTTGTCAGCGAGACTTATACACGTCTCGA
TCCCAAGGCAGATCCTCCGACGCTGGAACTAAGCCTGGCCGCGGGACGAC
ATAGTTTGTGGGGTACGTGCTGTGGAGGGACGGATGTAGATCATTGCCCC
CTTATCTTTCCCTCCCATCTCTATGCATGGATGCAACAGGACACAAAGTC
TGGAATGCGGCTAAGGTCCTCGGTGAAATGCTCGAACTTGACCCCTCCCT
CGTGCGGGGAAAGACGGTTCTTGAACTCGGCGCGGGATGCGCTCTTCCCT
CCCTCCTGGCTGCATTGAATGGAGCGAAGCATGTGGTTGCCTCTGATTAT
GCCTCAAGCACCGACCAAGTCTTGGTGGAGGCCATGCAAAGCAATGTAGA
TAGACTGGTTGAACAAGGGCACGTATCCAAGGGGGCGTTAAGCACGGTGG
GCTACGTCTGGGGCCAGCCGGTCCACACGCTGCTGGCGCCGTTGGAGGGG
ATGGGTGGGGTGGAGGAAGAAGGGAAGGAAGGAAAGAAGAGGCGAAAGTT
CGATCTTATCATCTGCGCCGACTTGATCTTCAATCGGAGCGAGCATAAAA
AGCTGCTGTGGACTTGCAGGGAGTGCTTGGAGGAGGATGGATCGAAGGAA
GTGCTGGTGGCATATTCGCACCATGATCCGGAGAAGCGGGCGTTGGACCT
GGCCTTCTTTACACTGGCGGAGCAGGAGGGAGGAGGGGAAGGGCCGGGGG
AGGGAGGGGTAGGTGGGTGGGTGGTGGAGGATGTGAGTGTGGAGCAGTGC
GTGGACTTATTTGTGGAGGGGGATGGGATGGACGAGGAGAGGGGGAAGGT
GTATGTCAAGCGGTTGACAAGAAGACGGAAGGGGACCGTGGACTGGCCTT
CGAGTGGAGAGTAAAAAAACGTTTTGCTTCAAAAGAGATAGGTCGGGCTG
CCTATGTCACATGGTGGGGGTTCAGGATGGAAGAGTTCATGGATGCTATT
CAATTAAAGCATATGGTGTTGCTTGATTTCTTTTATTTGACGGGAGGAGG
GCATTACTTTATTAACTCTGGCTTTCTGCCAGT

Coding sequence (CDS) from alignment at scaffold_14:220303..222135+

>mRNA_5972 ID=mRNA_5972|Name=jgi.p|Nanoce1779_2|78134|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_14:220303..222135+ (Nannochloropsis oceanica)
ATGGATGCAACAGGACACAAAGTCTGGAATGCGGCTAAGGTCCTCGGTGA
AATGCTCGAACTTGACCCCTCCCTCGTGCGGGGAAAGACGGTTCTTGAAC
TCGGCGCGGGATGCGCTCTTCCCTCCCTCCTGGCTGCATTGAATGGAGCG
AAGCATGTGGTTGCCTCTGATTATGCCTCAAGCACCGACCAAGTCTTGGT
GGAGGCCATGCAAAGCAATGTAGATAGACTGGTTGAACAAGGGCACGTAT
CCAAGGGGGCGTTAAGCACGGTGGGCTACGTCTGGGGCCAGCCGGTCCAC
ACGCTGCTGGCGCCGTTGGAGGGGATGGGTGGGGTGGAGGAAGAAGGGAA
GGAAGGAAAGAAGAGGCGAAAGTTCGATCTTATCATCTGCGCCGACTTGA
TCTTCAATCGGAGCGAGCATAAAAAGCTGCTGTGGACTTGCAGGGAGTGC
TTGGAGGAGGATGGATCGAAGGAAGTGCTGGTGGCATATTCGCACCATGA
TCCGGAGAAGCGGGCGTTGGACCTGGCCTTCTTTACACTGGCGGAGCAGG
AGGGAGGAGGGGAAGGGCCGGGGGAGGGAGGGGTAGGTGGGTGGGTGGTG
GAGGATGTGAGTGTGGAGCAGTGCGTGGACTTATTTGTGGAGGGGGATGG
GATGGACGAGGAGAGGGGGAAGGTGTATGTCAAGCGGTTGACAAGAAGAC
GGAAGGGGACCGTGGACTGGCCTTCGAGTGGAGAGTAA

Synonyms

Publications