jgi.p|Nanoce1779_2|593326, mRNA_5969 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593326
Unique NamemRNA_5969
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length707
Alignment locationscaffold_14:211382..212088 -

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Properties
Property NameValue
TranscriptId593412
TrackFilteredModels2
ProteinId593326
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:211382..212088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593326gene_5969Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593326mRNA_5969-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5969CDS_5969Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5969 ID=mRNA_5969|Name=jgi.p|Nanoce1779_2|593326|organism=Nannochloropsis oceanica|type=mRNA|length=707bp
ACAGATTCTCCCTAAGCAAGATGATTTTGTCGCACCCCGTTAGCCGTTGT
TGCCTGTCTCACGTACGCCGCCACCATCTCCTGCTGCTGCCACTACCTCC
TAGTAGCGCTATCACCCCAGCCTCGTTCACTCGCCCCTATTCCACCTCAT
CCCCTCCACCGCGATCCCCTCGTCCCTTCCGCGTTCTGGGCCTGCAGCAA
GTCGCCATTGGCTCCCTGGACAAGGCCGGCCTCTCCAAGCTGTGGGGGGA
GGTTCTGGGGATCCCCACCACGGGCACATTCCGTAGCGACAAGGAGAACG
TAGACGAGGACATCTTGCGTCTCGGTGCCCCCGGCAGTCCTTGGGACGTG
GAGATTGACTTAATGCAGCCCATTGACCCGTCAAAATCCCCCAAGGTACA
CGTCCCCCCCCTTAATCACATAGGCTTGTGGGTCCACCCCTTGGCTGCAG
CTGTCGAGTACCTTACCGCGCAAGGCGTCCGATTCACGCCGGGCGGCATC
CGAAAAGGTGCTGCGGGGCACGATGTGTGCTTTATCCATCCCAAGGGGAG
TCCGGCCATGCCTGTGTCGGGGGAGGGGGTCTTGATTGAGTTGGTGCAGG
CTCCACCAAAGGTGGTGGAGGCCTACGAAGAAGCGGCGGCAGCGGCGAAG
TAAAGACAGCAGCAGCGAGATGAAGAGAAACGATGCTATTATACATAAAG
TGAAACA
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protein sequence of jgi.p|Nanoce1779_2|593326

>mRNA_5969-protein ID=mRNA_5969-protein|Name=jgi.p|Nanoce1779_2|593326|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MILSHPVSRCCLSHVRRHHLLLLPLPPSSAITPASFTRPYSTSSPPPRSP
RPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILR
LGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTA
QGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVE
AYEEAAAAAK*
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mRNA from alignment at scaffold_14:211382..212088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5969 ID=mRNA_5969|Name=jgi.p|Nanoce1779_2|593326|organism=Nannochloropsis oceanica|type=mRNA|length=707bp|location=Sequence derived from alignment at scaffold_14:211382..212088- (Nannochloropsis oceanica)
ACAGATTCTCCCTAAGCAAGATGATTTTGTCGCACCCCGTTAGCCGTTGT
TGCCTGTCTCACGTACGCCGCCACCATCTCCTGCTGCTGCCACTACCTCC
TAGTAGCGCTATCACCCCAGCCTCGTTCACTCGCCCCTATTCCACCTCAT
CCCCTCCACCGCGATCCCCTCGTCCCTTCCGCGTTCTGGGCCTGCAGCAA
GTCGCCATTGGCTCCCTGGACAAGGCCGGCCTCTCCAAGCTGTGGGGGGA
GGTTCTGGGGATCCCCACCACGGGCACATTCCGTAGCGACAAGGAGAACG
TAGACGAGGACATCTTGCGTCTCGGTGCCCCCGGCAGTCCTTGGGACGTG
GAGATTGACTTAATGCAGCCCATTGACCCGTCAAAATCCCCCAAGGTACA
CGTCCCCCCCCTTAATCACATAGGCTTGTGGGTCCACCCCTTGGCTGCAG
CTGTCGAGTACCTTACCGCGCAAGGCGTCCGATTCACGCCGGGCGGCATC
CGAAAAGGTGCTGCGGGGCACGATGTGTGCTTTATCCATCCCAAGGGGAG
TCCGGCCATGCCTGTGTCGGGGGAGGGGGTCTTGATTGAGTTGGTGCAGG
CTCCACCAAAGGTGGTGGAGGCCTACGAAGAAGCGGCGGCAGCGGCGAAG
TAAAGACAGCAGCAGCGAGATGAAGAGAAACGATGCTATTATACATAAAG
TGAAACA
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Coding sequence (CDS) from alignment at scaffold_14:211382..212088-

>mRNA_5969 ID=mRNA_5969|Name=jgi.p|Nanoce1779_2|593326|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_14:211382..212088- (Nannochloropsis oceanica)
ATGATTTTGTCGCACCCCGTTAGCCGTTGTTGCCTGTCTCACGTACGCCG
CCACCATCTCCTGCTGCTGCCACTACCTCCTAGTAGCGCTATCACCCCAG
CCTCGTTCACTCGCCCCTATTCCACCTCATCCCCTCCACCGCGATCCCCT
CGTCCCTTCCGCGTTCTGGGCCTGCAGCAAGTCGCCATTGGCTCCCTGGA
CAAGGCCGGCCTCTCCAAGCTGTGGGGGGAGGTTCTGGGGATCCCCACCA
CGGGCACATTCCGTAGCGACAAGGAGAACGTAGACGAGGACATCTTGCGT
CTCGGTGCCCCCGGCAGTCCTTGGGACGTGGAGATTGACTTAATGCAGCC
CATTGACCCGTCAAAATCCCCCAAGGTACACGTCCCCCCCCTTAATCACA
TAGGCTTGTGGGTCCACCCCTTGGCTGCAGCTGTCGAGTACCTTACCGCG
CAAGGCGTCCGATTCACGCCGGGCGGCATCCGAAAAGGTGCTGCGGGGCA
CGATGTGTGCTTTATCCATCCCAAGGGGAGTCCGGCCATGCCTGTGTCGG
GGGAGGGGGTCTTGATTGAGTTGGTGCAGGCTCCACCAAAGGTGGTGGAG
GCCTACGAAGAAGCGGCGGCAGCGGCGAAGTAA
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Synonyms
Publications