jgi.p|Nanoce1779_2|556771, mRNA_5968 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556771
Unique Name	mRNA_5968
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1488
Alignment location	scaffold_14:209263..211204 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	556857
Track	FilteredModels2
ProteinId	556771

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:209263..211204 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556771	gene_5968	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556771	mRNA_5968-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5968	CDS_5968	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:209263..211204+
coding sequence from alignment at scaffold_14:209263..211204+

mRNA sequence

>mRNA_5968 ID=mRNA_5968|Name=jgi.p|Nanoce1779_2|556771|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
CACAGGTCACAAAGCTCGTCTCCGTGCACGGCAAGGCACCGGCAAGCAAG
CATGGCAGACCTGGGTCTAGGAAAGGAAACAAGTAAAGACCTGACGCGTA
TCGAGCGTATTGGCGCCCACTCCCACATTCGTGGCCTTGGCTTGGACGAT
GCTCTCGAACCTCGCGAAGTTAGCCAGGGGATGGTCGGTCAAGCCGGAGC
CCGTCGTGCCGCCGGCGTCGTCTACAAAATGATCAAAGAAGGGAAGATTG
CAGGCAGAGCCATCCTTCTTGCAGGACAGCCGGGCACGGGGAAGACGGCC
ATTGCGATGGGGCTGGCACAGGCCTTGGGAGAAGGGACTCCGTTCACGAC
GATTGCGGGTTCAGAGATTTTTTCTTTGGAAATGTCAAAAACGGAGGCAA
TGACACAGGCATTCCGTCGGTCCATTGGGGTGAGGATCATGGAGGAGACG
GAAATAATCGAGGGGGAGGTGGTGGAGGTTCAGGTGGACACGGCGGCGGG
GGCTGGAGGGAAGACTGGACGGATTACCTTGTGCACGACGGAGATGGAAA
CGGTGTATGACCTCGGTGCGAAGATGATTGAGGCATTGCAGAAGGAGAAG
GTTGCGGCGGGGGATGTGATTACGATTGATAAGGCGAGTGGGAAGATCTC
GAAGTTAGGTCGGTCTTTTTCACGATCGAGGGATTATGATGCCATGGGGC
CTCAGACACGGTTTGTGCAGTGCCCGGAGGGGGAGCTGCAGAAGAGGAAG
GAGATGGTGCATGTGGTGAGTTTGCATGAGATAGACGTGATTAACTCGAG
GCAGCAGGGTTTTCTGGCATTGTTCGCAGGGGATACGGGGGAGATAAAAG
GGGAGGTCCGCGAGCAGATAGACCAGAAGGTGGCGGAGTGGAGGGAGGAG
GGCAAGGCGACTGTGGTCCCGGGGGTGCTTTTTATTGACGAGGTGCACAT
GTTGGACATTGAGTGTTTCTCGTGGTTGAACCGCGCCCTGGAGAGTGACC
TGGCCCCGGTGCTGATCATGGCGACGAATCGCGGTATGGCCCAGATTAGG
GGAACTGCATACAAGAGCCCGCACGGGATCCCGATTGACCTGCTCGATCG
GCTTATGATTATTGGCACCTCCCCATATGCCGAGGCAGAGGTGAGGAAGA
TCCTTCAGATCAGGTGCGAGGAGGAGGATGTGGAGATGAGCGAGGATGCC
TTGGAGCTGCTGACCAAGATTGGGATGGAGGCCTCGTTGCGGTATGCCAT
CCACATGATCATAGCCGCGTCTCTGGTGGCGCAGAAGCGGAAGGCAGGGA
GTGTGGACGTCCAAGACATCAAGAAGGTGTACTCATTGTTTGTGGACGTG
AAACGGTCAACTCAGTTCCTGGTCGAGTACCAACAGGAGTTCATGTTTAA
TGAGTTGGAGGGAGATGAAGAGGAAGAGGAGGAGGCGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGCCGCGGGCATGGCCGAGGACTAG

protein sequence of jgi.p|Nanoce1779_2|556771

>mRNA_5968-protein ID=mRNA_5968-protein|Name=jgi.p|Nanoce1779_2|556771|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MADLGLGKETSKDLTRIERIGAHSHIRGLGLDDALEPREVSQGMVGQAGA
RRAAGVVYKMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGEGTPFTT
IAGSEIFSLEMSKTEAMTQAFRRSIGVRIMEETEIIEGEVVEVQVDTAAG
AGGKTGRITLCTTEMETVYDLGAKMIEALQKEKVAAGDVITIDKASGKIS
KLGRSFSRSRDYDAMGPQTRFVQCPEGELQKRKEMVHVVSLHEIDVINSR
QQGFLALFAGDTGEIKGEVREQIDQKVAEWREEGKATVVPGVLFIDEVHM
LDIECFSWLNRALESDLAPVLIMATNRGMAQIRGTAYKSPHGIPIDLLDR
LMIIGTSPYAEAEVRKILQIRCEEEDVEMSEDALELLTKIGMEASLRYAI
HMIIAASLVAQKRKAGSVDVQDIKKVYSLFVDVKRSTQFLVEYQQEFMFN
ELEGDEEEEEEAEEEEEEEEEAAGMAED*

mRNA from alignment at scaffold_14:209263..211204+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5968 ID=mRNA_5968|Name=jgi.p|Nanoce1779_2|556771|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at scaffold_14:209263..211204+ (Nannochloropsis oceanica)
CACAGGTCACAAAGCTCGTCTCCGTGCACGGCAAGGCACCGGCAAGCAAG
CATGGCAGACCTGGGTCTAGGAAAGGTGAGTGTCGTGTAGTTTTTGGGCT
GGCCTCCCCGTCGTGCTGAGAACTTATGGTTGATGGTGGGCGAATCTGTG
GCAGCTAGCTTATATACGATTACATCACGAACCTCCTTATATGATGTGGG
AATCCACGAAGGGTAGAGGATATTACCATGTTGGCATTTGCCATCGGCTG
CCGCATTCCGGCAATTGGACAGACCCCTCGGGCTCCTCTCCCGCTCTTCC
GCTATAGATGAGGAGGATGACCAGCGGCCCGGCCCCCTTTCCACCTTTTG
TCTTGTCTGCTTATTTATACAGAGGACAATATCTCGCCTGCCCTCTTCCT
TTCCTCCTGCTGTGCTTGTCTTAGATTTCAATCATATTACATGTCGTCCC
TCTTCTCCATTCCCCCCCCCTGCACGCCTTTCAACCCCTCCCTTTCCCTG
TCCCCCCTTCTCTCTCCCACATTTACCAGGAAACAAGTAAAGACCTGACG
CGTATCGAGCGTATTGGCGCCCACTCCCACATTCGTGGCCTTGGCTTGGA
CGATGCTCTCGAACCTCGCGAAGTTAGCCAGGGGATGGTCGGTCAAGCCG
GAGCCCGTCGTGCCGCCGGCGTCGTCTACAAAATGATCAAAGAAGGGAAG
ATTGCAGGCAGAGCCATCCTTCTTGCAGGACAGCCGGGCACGGGGAAGAC
GGCCATTGCGATGGGGCTGGCACAGGCCTTGGGAGAAGGGACTCCGTTCA
CGACGATTGCGGGTTCAGAGATTTTTTCTTTGGAAATGTCAAAAACGGAG
GCAATGACACAGGCATTCCGTCGGTCCATTGGGGTGAGGATCATGGAGGA
GACGGAAATAATCGAGGGGGAGGTGGTGGAGGTTCAGGTGGACACGGCGG
CGGGGGCTGGAGGGAAGACTGGACGGATTACCTTGTGCACGACGGAGATG
GAAACGGTGTATGACCTCGGTGCGAAGATGATTGAGGCATTGCAGAAGGA
GAAGGTTGCGGCGGGGGATGTGATTACGATTGATAAGGCGAGTGGGAAGA
TCTCGAAGTTAGGTCGGTCTTTTTCACGATCGAGGGATTATGATGCCATG
GGGCCTCAGACACGGTTTGTGCAGTGCCCGGAGGGGGAGCTGCAGAAGAG
GAAGGAGATGGTGCATGTGGTGAGTTTGCATGAGATAGACGTGATTAACT
CGAGGCAGCAGGGTTTTCTGGCATTGTTCGCAGGGGATACGGGGGAGATA
AAAGGGGAGGTCCGCGAGCAGATAGACCAGAAGGTGGCGGAGTGGAGGGA
GGAGGGCAAGGCGACTGTGGTCCCGGGGGTGCTTTTTATTGACGAGGTGC
ACATGTTGGACATTGAGTGTTTCTCGTGGTTGAACCGCGCCCTGGAGAGT
GACCTGGCCCCGGTGCTGATCATGGCGACGAATCGCGGTATGGCCCAGAT
TAGGGGAACTGCATACAAGAGCCCGCACGGGATCCCGATTGACCTGCTCG
ATCGGCTTATGATTATTGGCACCTCCCCATATGCCGAGGCAGAGGTGAGG
AAGATCCTTCAGATCAGGTGCGAGGAGGAGGATGTGGAGATGAGCGAGGA
TGCCTTGGAGCTGCTGACCAAGATTGGGATGGAGGCCTCGTTGCGGTATG
CCATCCACATGATCATAGCCGCGTCTCTGGTGGCGCAGAAGCGGAAGGCA
GGGAGTGTGGACGTCCAAGACATCAAGAAGGTGTACTCATTGTTTGTGGA
CGTGAAACGGTCAACTCAGTTCCTGGTCGAGTACCAACAGGAGTTCATGT
TTAATGAGTTGGAGGGAGATGAAGAGGAAGAGGAGGAGGCGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGCCGCGGGCATGGCCGAGGACTAG

Coding sequence (CDS) from alignment at scaffold_14:209263..211204+

>mRNA_5968 ID=mRNA_5968|Name=jgi.p|Nanoce1779_2|556771|organism=Nannochloropsis oceanica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_14:209263..211204+ (Nannochloropsis oceanica)
ATGGCAGACCTGGGTCTAGGAAAGGAAACAAGTAAAGACCTGACGCGTAT
CGAGCGTATTGGCGCCCACTCCCACATTCGTGGCCTTGGCTTGGACGATG
CTCTCGAACCTCGCGAAGTTAGCCAGGGGATGGTCGGTCAAGCCGGAGCC
CGTCGTGCCGCCGGCGTCGTCTACAAAATGATCAAAGAAGGGAAGATTGC
AGGCAGAGCCATCCTTCTTGCAGGACAGCCGGGCACGGGGAAGACGGCCA
TTGCGATGGGGCTGGCACAGGCCTTGGGAGAAGGGACTCCGTTCACGACG
ATTGCGGGTTCAGAGATTTTTTCTTTGGAAATGTCAAAAACGGAGGCAAT
GACACAGGCATTCCGTCGGTCCATTGGGGTGAGGATCATGGAGGAGACGG
AAATAATCGAGGGGGAGGTGGTGGAGGTTCAGGTGGACACGGCGGCGGGG
GCTGGAGGGAAGACTGGACGGATTACCTTGTGCACGACGGAGATGGAAAC
GGTGTATGACCTCGGTGCGAAGATGATTGAGGCATTGCAGAAGGAGAAGG
TTGCGGCGGGGGATGTGATTACGATTGATAAGGCGAGTGGGAAGATCTCG
AAGTTAGGTCGGTCTTTTTCACGATCGAGGGATTATGATGCCATGGGGCC
TCAGACACGGTTTGTGCAGTGCCCGGAGGGGGAGCTGCAGAAGAGGAAGG
AGATGGTGCATGTGGTGAGTTTGCATGAGATAGACGTGATTAACTCGAGG
CAGCAGGGTTTTCTGGCATTGTTCGCAGGGGATACGGGGGAGATAAAAGG
GGAGGTCCGCGAGCAGATAGACCAGAAGGTGGCGGAGTGGAGGGAGGAGG
GCAAGGCGACTGTGGTCCCGGGGGTGCTTTTTATTGACGAGGTGCACATG
TTGGACATTGAGTGTTTCTCGTGGTTGAACCGCGCCCTGGAGAGTGACCT
GGCCCCGGTGCTGATCATGGCGACGAATCGCGGTATGGCCCAGATTAGGG
GAACTGCATACAAGAGCCCGCACGGGATCCCGATTGACCTGCTCGATCGG
CTTATGATTATTGGCACCTCCCCATATGCCGAGGCAGAGGTGAGGAAGAT
CCTTCAGATCAGGTGCGAGGAGGAGGATGTGGAGATGAGCGAGGATGCCT
TGGAGCTGCTGACCAAGATTGGGATGGAGGCCTCGTTGCGGTATGCCATC
CACATGATCATAGCCGCGTCTCTGGTGGCGCAGAAGCGGAAGGCAGGGAG
TGTGGACGTCCAAGACATCAAGAAGGTGTACTCATTGTTTGTGGACGTGA
AACGGTCAACTCAGTTCCTGGTCGAGTACCAACAGGAGTTCATGTTTAAT
GAGTTGGAGGGAGATGAAGAGGAAGAGGAGGAGGCGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGCCGCGGGCATGGCCGAGGACTAGATGGCAGACCTGG
GTCTAGGAAAGGAAACAAGTAAAGACCTGACGCGTATCGAGCGTATTGGC
GCCCACTCCCACATTCGTGGCCTTGGCTTGGACGATGCTCTCGAACCTCG
CGAAGTTAGCCAGGGGATGGTCGGTCAAGCCGGAGCCCGTCGTGCCGCCG
GCGTCGTCTACAAAATGATCAAAGAAGGGAAGATTGCAGGCAGAGCCATC
CTTCTTGCAGGACAGCCGGGCACGGGGAAGACGGCCATTGCGATGGGGCT
GGCACAGGCCTTGGGAGAAGGGACTCCGTTCACGACGATTGCGGGTTCAG
AGATTTTTTCTTTGGAAATGTCAAAAACGGAGGCAATGACACAGGCATTC
CGTCGGTCCATTGGGGTGAGGATCATGGAGGAGACGGAAATAATCGAGGG
GGAGGTGGTGGAGGTTCAGGTGGACACGGCGGCGGGGGCTGGAGGGAAGA
CTGGACGGATTACCTTGTGCACGACGGAGATGGAAACGGTGTATGACCTC
GGTGCGAAGATGATTGAGGCATTGCAGAAGGAGAAGGTTGCGGCGGGGGA
TGTGATTACGATTGATAAGGCGAGTGGGAAGATCTCGAAGTTAGGTCGGT
CTTTTTCACGATCGAGGGATTATGATGCCATGGGGCCTCAGACACGGTTT
GTGCAGTGCCCGGAGGGGGAGCTGCAGAAGAGGAAGGAGATGGTGCATGT
GGTGAGTTTGCATGAGATAGACGTGATTAACTCGAGGCAGCAGGGTTTTC
TGGCATTGTTCGCAGGGGATACGGGGGAGATAAAAGGGGAGGTCCGCGAG
CAGATAGACCAGAAGGTGGCGGAGTGGAGGGAGGAGGGCAAGGCGACTGT
GGTCCCGGGGGTGCTTTTTATTGACGAGGTGCACATGTTGGACATTGAGT
GTTTCTCGTGGTTGAACCGCGCCCTGGAGAGTGACCTGGCCCCGGTGCTG
ATCATGGCGACGAATCGCGGTATGGCCCAGATTAGGGGAACTGCATACAA
GAGCCCGCACGGGATCCCGATTGACCTGCTCGATCGGCTTATGATTATTG
GCACCTCCCCATATGCCGAGGCAGAGGTGAGGAAGATCCTTCAGATCAGG
TGCGAGGAGGAGGATGTGGAGATGAGCGAGGATGCCTTGGAGCTGCTGAC
CAAGATTGGGATGGAGGCCTCGTTGCGGTATGCCATCCACATGATCATAG
CCGCGTCTCTGGTGGCGCAGAAGCGGAAGGCAGGGAGTGTGGACGTCCAA
GACATCAAGAAGGTGTACTCATTGTTTGTGGACGTGAAACGGTCAACTCA
GTTCCTGGTCGAGTACCAACAGGAGTTCATGTTTAATGAGTTGGAGGGAG
ATGAAGAGGAAGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GCCGCGGGCATGGCCGAGGACTAG

Synonyms

Publications