|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 593406 |
| Track | FilteredModels2 |
| ProteinId | 593320 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:204532..207365 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5966 ID=mRNA_5966|Name=jgi.p|Nanoce1779_2|593320|organism=Nannochloropsis oceanica|type=mRNA|length=2308bp
CAGACCACCGCGAAACCAAGTTCAGCAGCAGAAACCAAGAGCATCATGCC
CACTCTCTTTTCCATTCTGGGCGTGGCTCTCTCCCTTGCCTCCACCTCGT
ACTGTTTTCAACTGCACATGACCGTGGGCGGCGACTTGCAAACGCAGCGA
AAGCAGCGTGTCGCCGGTTCTTCTGCGGCCAATCCCGCTGCCAGCACGAC
GCACCAGGGACCTCCGCCCGCCATGGACAGCATCAGGACGACCCATACGC
TGTCAAACAATATTAATGGCGCCTCTTATCCCGAAAACAGCCCTTTCCAC
TGCGCCCTGTACGACGAGCTCGGCAGGCCTTGGACGAAGGAAAGCGCTCG
CCCTACCTTGGAAGGCCGCTCGTGGCACGCCACGTTGCAGTTGCCGTTGG
CAAGGCAGATGCTGATGGATGCCGCGCGGGCCCAAAGCGTGAGTCGGGAT
CTTTTGTTGGACTCGGCCCATCTCGTGGAGTATGTCAGTCTGTTCGGTAC
AGGGCAGGAGGGGGATGAGGAAGGAAAGGAGGGAGGGGTGGATGTGGATG
GGGTGTGGCGCTTGCAGTTTAATGCGGGCGCAGCCTTTTTGAAGGCGAGG
CAGGATAAATGGGGGTATCTTATGCATGACGAGGTGGAGGAAGGGAGGGG
GAAAGGGGAGGAGGAGGCACCGGTGTGTTTGCGGATTGATTCGGAGGCGT
CAACCATTGTGTTGGATGCTTTGCAAGGGCCCGCACCAAAGTCTTTCCAA
GGTACCTTCCGGAAGGATGACAAGAATACAATGCATGTGGATTTCTCGCG
TGTCCAGCTCTTGCGGAAACTGAGCCAGAGGGAAGAGGAAGACGAGTGCG
AGGAGGAGGACGAGAAGGAGGTAGGGAGGGAAGGATCACCGATGTTGGCC
TCGGTGGACTTGCCGTTGGTGAATGCGTTCTTAAGGCCGGGGGCATCGAT
GCATGTCATTGCTGCTGATGAGAATCATTTGGCACTGCGGTATCTGGGGG
CCGACGCACCGGAGAGCTCTCTATTGGTCTTTTCGAAGGTTGCCGTTGCT
GCGTGTGGAGGAGAGGGGAAGGAGGAGGTGGAGGAAGAGCAGGAGACGAA
AATGGACAAAATTGTCTGGGGTGCCAGGCCGCGTGCTGCTAAGAAGACTG
CAGTAGCTGCTGGTGCTGCCGCCACCACCCCTCGCGAGAAGAGCAGTCCC
AAGAAGGATATATGGGGTCATGTCGCCAAGGCTACCCGTGAAGAGCAACC
CCGTTACGCAAACGCCAATGAACGCAAGGCAGAGCGTTCCCGCCGGGTGA
AGATGCTGGGAGGTTATGATTCCATATCTGATTATTTCGAACAGGAGGGG
GTGTCCTTGTTCCTGGTCCTGGTGTTCCCCGCGTTCGTGAAAGTAGCCCC
CCGTCTCATCGCTCTGGCGCAAGTCAAATTGTTGCTGCTCCAGGAATTAA
TGAGCAGGATGGGTGACATGTGGCACTAAAAGATACAGGTCGCGGATGTT
TTATCTCGCTTTAATATCTCCCTTCTACGAGGGGGAAAGGGAGGGAAGGC
AGTGCCGATTTTGGGCACGACCGACCCCTTACTCTTTCACTCGCGCATGT
GACTTGTAAAAAATCTGAAAATAAATTTGTTTGTCCTTGTAATCATTTTG
AACCAGGCTTAAAGTTTTCACATTTCGAAACGCCGTGATCCGTTTGCCCC
TCCCCCCACGGAAAGGGCAATCATCCTATGTAAATAAAAAATAATGTCTT
GTACGCATCTTCCTGTCTGAATTCGAACGGAATAATAAGAAGTAAATATG
TCTTGTCCTTTAACTGTACATACAATGGTTGATCATTTGTGAATACAAGT
TTAGCAGCAACAGCAGCTACAACAGCAGCAACAGTAACAGTAACAGTAGC
AGCAGCAGCAACAACAACAGCAACGAAAAGAAAGCCAGCCATTTCGCATT
TTGTTTCGTTTTTCGAATGCAGGGTAGTGTTGGGAAGAGTACAAGAATAA
AAGCACAGAAATTCGTGAGAGGATGATGGCAGCGTCAACAGCAGCACCAG
CAGAACCAGGAGGAGAAGTAGAAGGAGGAGAATTAAGAGAGTATAAGTTA
ACTCCGAAATAATCAAGCCAAGGCCAACACGCTGCTGCATTCCCATTCAG
GAGCGAAGAGCATCACATTTGCGAGAAGTGGGAGATAACATACACGGGGT
ACATCACAAAAGCTACGAGAGGAAATCACTTTGCCTCCTTTCCCTCCCGC
CTCTTTTTAAATCCAAAGAGCAAATTCAAAGCAAAAGTAAAAAAACTACA
TTCGAAGC back to topprotein sequence of jgi.p|Nanoce1779_2|593320 >mRNA_5966-protein ID=mRNA_5966-protein|Name=jgi.p|Nanoce1779_2|593320|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MPTLFSILGVALSLASTSYCFQLHMTVGGDLQTQRKQRVAGSSAANPAAS
TTHQGPPPAMDSIRTTHTLSNNINGASYPENSPFHCALYDELGRPWTKES
ARPTLEGRSWHATLQLPLARQMLMDAARAQSVSRDLLLDSAHLVEYVSLF
GTGQEGDEEGKEGGVDVDGVWRLQFNAGAAFLKARQDKWGYLMHDEVEEG
RGKGEEEAPVCLRIDSEASTIVLDALQGPAPKSFQGTFRKDDKNTMHVDF
SRVQLLRKLSQREEEDECEEEDEKEVGREGSPMLASVDLPLVNAFLRPGA
SMHVIAADENHLALRYLGADAPESSLLVFSKVAVAACGGEGKEEVEEEQE
TKMDKIVWGARPRAAKKTAVAAGAAATTPREKSSPKKDIWGHVAKATREE
QPRYANANERKAERSRRVKMLGGYDSISDYFEQEGVSLFLVLVFPAFVKV
APRLIALAQVKLLLLQELMSRMGDMWH* back to topmRNA from alignment at scaffold_14:204532..207365- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5966 ID=mRNA_5966|Name=jgi.p|Nanoce1779_2|593320|organism=Nannochloropsis oceanica|type=mRNA|length=2834bp|location=Sequence derived from alignment at scaffold_14:204532..207365- (Nannochloropsis oceanica)
CAGACCACCGCGAAACCAAGTTCAGCAGCAGAAACCAAGAGCATCATGCC
CACTCTCTTTTCCATTCTGGGCGTGGCTCTCTCCCTTGCCTCCACCTCGT
ACTGTTTTCAACTGCACATGACCGTGGGCGGCGACTTGCAAACGCAGCGA
AAGCAGCGTGTCGCCGGTTCTTCTGCGGCCAATCCCGCTGCCAGCACGAC
GCACCAGGGACCTCCGCCCGCCATGGACAGCATCAGGACGACCCATACGC
TGTCAAACAATATTAATGGGTAAGTGGCGGGCTTTGTTGCCCATTTTCAA
CACCCGCCCGCCCAGTCGGCCATCTTGACACCACCCTCCCTCCCGCCTTA
AAGTGTCGCAACTTGTGGGGATTGGCTTTAGACTTTGCATGACTACTGTT
CCACAAGAAAATGCCTCTGTGTATATCCCTCTTTCCTATTTCTCGTCATG
TCAGTGGCATCTTTTTCTTATCCCGGTGCGGTGCACCGTCCTTTTCACGG
TTGAAGTACGCATGGCCGCTCTCTAATCATTCTACTCCTGTCTTTCGTCC
CCACGTCCTGACTGCACGACTGGATTTTCTCTTGTTGTTTCAGCGTGTCT
CTATCATTTACCTTTCCCGCTTGCCTGCATAGTGCGGTGTCTCCTTTCCC
CTCAGTGTGCTTCTGATCCCTGTGGCCCATGCCCAAATCAACAACCAGCC
ATCACCTCTCATCTTCCTTCTTTTTCTCGCCACGCTTCTCTGTAAAGTAC
CCACTCCTCATAACCATCCCCCTCCCATCCTCCCTTCCCTTTTAGCGCCT
CTTATCCCGAAAACAGCCCTTTCCACTGCGCCCTGTACGACGAGCTCGGC
AGGCCTTGGACGAAGGAAAGCGCTCGCCCTACCTTGGAAGGCCGCTCGTG
GCACGCCACGTTGCAGTTGCCGTTGGCAAGGCAGATGCTGATGGATGCCG
CGCGGGCCCAAAGCGTGAGTCGGGATCTTTTGTTGGACTCGGCCCATCTC
GTGGAGTATGTCAGTCTGTTCGGTACAGGGCAGGAGGGGGATGAGGAAGG
AAAGGAGGGAGGGGTGGATGTGGATGGGGTGTGGCGCTTGCAGTTTAATG
CGGGCGCAGCCTTTTTGAAGGCGAGGCAGGATAAATGGGGGTATCTTATG
CATGACGAGGTGGAGGAAGGGAGGGGGAAAGGGGAGGAGGAGGCACCGGT
GTGTTTGCGGATTGATTCGGAGGCGTCAACCATTGTGTTGGATGCTTTGC
AAGGGCCCGCACCAAAGTCTTTCCAAGGTACCTTCCGGAAGGATGACAAG
AATACAATGCATGTGGATTTCTCGCGTGTCCAGCTCTTGCGGAAACTGAG
CCAGAGGGAAGAGGAAGACGAGTGCGAGGAGGAGGACGAGAAGGAGGTAG
GGAGGGAAGGATCACCGATGTTGGCCTCGGTGGACTTGCCGTTGGTGAAT
GCGTTCTTAAGGCCGGGGGCATCGATGCATGTCATTGCTGCTGATGAGAA
TCATTTGGCACTGCGGTATCTGGGGGCCGACGCACCGGAGAGCTCTCTAT
TGGTCTTTTCGAAGGTTGCCGTTGCTGCGTGTGGAGGAGAGGGGAAGGAG
GAGGTGGAGGAAGAGCAGGAGACGAAAATGGACAAAATTGTCTGGGGTGC
CAGGCCGCGTGCTGCTAAGAAGACTGCAGTAGCTGCTGGTGCTGCCGCCA
CCACCCCTCGCGAGAAGAGCAGTCCCAAGAAGGATATATGGGGTCATGTC
GCCAAGGCTACCCGTGAAGAGCAACCCCGTTACGCAAACGCCAATGAACG
CAAGGCAGAGCGTTCCCGCCGGGTGAAGATGCTGGGAGGTTATGATTCCA
TATCTGATTATTTCGAACAGGAGGGGGTGTCCTTGTTCCTGGTCCTGGTG
TTCCCCGCGTTCGTGAAAGTAGCCCCCCGTCTCATCGCTCTGGCGCAAGT
CAAATTGTTGCTGCTCCAGGAATTAATGAGCAGGATGGGTGACATGTGGC
ACTAAAAGATACAGGTCGCGGATGTTTTATCTCGCTTTAATATCTCCCTT
CTACGAGGGGGAAAGGGAGGGAAGGCAGTGCCGATTTTGGGCACGACCGA
CCCCTTACTCTTTCACTCGCGCATGTGACTTGTAAAAAATCTGAAAATAA
ATTTGTTTGTCCTTGTAATCATTTTGAACCAGGCTTAAAGTTTTCACATT
TCGAAACGCCGTGATCCGTTTGCCCCTCCCCCCACGGAAAGGGCAATCAT
CCTATGTAAATAAAAAATAATGTCTTGTACGCATCTTCCTGTCTGAATTC
GAACGGAATAATAAGAAGTAAATATGTCTTGTCCTTTAACTGTACATACA
ATGGTTGATCATTTGTGAATACAAGTTTAGCAGCAACAGCAGCTACAACA
GCAGCAACAGTAACAGTAACAGTAGCAGCAGCAGCAACAACAACAGCAAC
GAAAAGAAAGCCAGCCATTTCGCATTTTGTTTCGTTTTTCGAATGCAGGG
TAGTGTTGGGAAGAGTACAAGAATAAAAGCACAGAAATTCGTGAGAGGAT
GATGGCAGCGTCAACAGCAGCACCAGCAGAACCAGGAGGAGAAGTAGAAG
GAGGAGAATTAAGAGAGTATAAGTTAACTCCGAAATAATCAAGCCAAGGC
CAACACGCTGCTGCATTCCCATTCAGGAGCGAAGAGCATCACATTTGCGA
GAAGTGGGAGATAACATACACGGGGTACATCACAAAAGCTACGAGAGGAA
ATCACTTTGCCTCCTTTCCCTCCCGCCTCTTTTTAAATCCAAAGAGCAAA
TTCAAAGCAAAAGTAAAAAAACTACATTCGAAGC back to topCoding sequence (CDS) from alignment at scaffold_14:204532..207365- >mRNA_5966 ID=mRNA_5966|Name=jgi.p|Nanoce1779_2|593320|organism=Nannochloropsis oceanica|type=CDS|length=2868bp|location=Sequence derived from alignment at scaffold_14:204532..207365- (Nannochloropsis oceanica)
CGCCTCTTATCCCGAAAACAGCCCTTTCCACTGCGCCCTGTACGACGAGC
TCGGCAGGCCTTGGACGAAGGAAAGCGCTCGCCCTACCTTGGAAGGCCGC
TCGTGGCACGCCACGTTGCAGTTGCCGTTGGCAAGGCAGATGCTGATGGA
TGCCGCGCGGGCCCAAAGCGTGAGTCGGGATCTTTTGTTGGACTCGGCCC
ATCTCGTGGAGTATGTCAGTCTGTTCGGTACAGGGCAGGAGGGGGATGAG
GAAGGAAAGGAGGGAGGGGTGGATGTGGATGGGGTGTGGCGCTTGCAGTT
TAATGCGGGCGCAGCCTTTTTGAAGGCGAGGCAGGATAAATGGGGGTATC
TTATGCATGACGAGGTGGAGGAAGGGAGGGGGAAAGGGGAGGAGGAGGCA
CCGGTGTGTTTGCGGATTGATTCGGAGGCGTCAACCATTGTGTTGGATGC
TTTGCAAGGGCCCGCACCAAAGTCTTTCCAAGGTACCTTCCGGAAGGATG
ACAAGAATACAATGCATGTGGATTTCTCGCGTGTCCAGCTCTTGCGGAAA
CTGAGCCAGAGGGAAGAGGAAGACGAGTGCGAGGAGGAGGACGAGAAGGA
GGTAGGGAGGGAAGGATCACCGATGTTGGCCTCGGTGGACTTGCCGTTGG
TGAATGCGTTCTTAAGGCCGGGGGCATCGATGCATGTCATTGCTGCTGAT
GAGAATCATTTGGCACTGCGGTATCTGGGGGCCGACGCACCGGAGAGCTC
TCTATTGGTCTTTTCGAAGGTTGCCGTTGCTGCGTGTGGAGGAGAGGGGA
AGGAGGAGGTGGAGGAAGAGCAGGAGACGAAAATGGACAAAATTGTCTGG
GGTGCCAGGCCGCGTGCTGCTAAGAAGACTGCAGTAGCTGCTGGTGCTGC
CGCCACCACCCCTCGCGAGAAGAGCAGTCCCAAGAAGGATATATGGGGTC
ATGTCGCCAAGGCTACCCGTGAAGAGCAACCCCGTTACGCAAACGCCAAT
GAACGCAAGGCAGAGCGTTCCCGCCGGGTGAAGATGCTGGGAGGTTATGA
TTCCATATCTGATTATTTCGAACAGGAGGGGGTGTCCTTGTTCCTGGTCC
TGGTGTTCCCCGCGTTCGTGAAAGTAGCCCCCCGTCTCATCGCTCTGGCG
CAAGTCAAATTGTTGCTGCTCCAGGAATTAATGAGCAGGATGGGTGACAT
GTGGCACTAAATGCCCACTCTCTTTTCCATTCTGGGCGTGGCTCTCTCCC
TTGCCTCCACCTCGTACTGTTTTCAACTGCACATGACCGTGGGCGGCGAC
TTGCAAACGCAGCGAAAGCAGCGTGTCGCCGGTTCTTCTGCGGCCAATCC
CGCTGCCAGCACGACGCACCAGGGACCTCCGCCCGCCATGGACAGCATCA
GGACGACCCATACGCTGTCAAACAATATTAATGGCGCCTCTTATCCCGAA
AACAGCCCTTTCCACTGCGCCCTGTACGACGAGCTCGGCAGGCCTTGGAC
GAAGGAAAGCGCTCGCCCTACCTTGGAAGGCCGCTCGTGGCACGCCACGT
TGCAGTTGCCGTTGGCAAGGCAGATGCTGATGGATGCCGCGCGGGCCCAA
AGCGTGAGTCGGGATCTTTTGTTGGACTCGGCCCATCTCGTGGAGTATGT
CAGTCTGTTCGGTACAGGGCAGGAGGGGGATGAGGAAGGAAAGGAGGGAG
GGGTGGATGTGGATGGGGTGTGGCGCTTGCAGTTTAATGCGGGCGCAGCC
TTTTTGAAGGCGAGGCAGGATAAATGGGGGTATCTTATGCATGACGAGGT
GGAGGAAGGGAGGGGGAAAGGGGAGGAGGAGGCACCGGTGTGTTTGCGGA
TTGATTCGGAGGCGTCAACCATTGTGTTGGATGCTTTGCAAGGGCCCGCA
CCAAAGTCTTTCCAAGGTACCTTCCGGAAGGATGACAAGAATACAATGCA
TGTGGATTTCTCGCGTGTCCAGCTCTTGCGGAAACTGAGCCAGAGGGAAG
AGGAAGACGAGTGCGAGGAGGAGGACGAGAAGGAGGTAGGGAGGGAAGGA
TCACCGATGTTGGCCTCGGTGGACTTGCCGTTGGTGAATGCGTTCTTAAG
GCCGGGGGCATCGATGCATGTCATTGCTGCTGATGAGAATCATTTGGCAC
TGCGGTATCTGGGGGCCGACGCACCGGAGAGCTCTCTATTGGTCTTTTCG
AAGGTTGCCGTTGCTGCGTGTGGAGGAGAGGGGAAGGAGGAGGTGGAGGA
AGAGCAGGAGACGAAAATGGACAAAATTGTCTGGGGTGCCAGGCCGCGTG
CTGCTAAGAAGACTGCAGTAGCTGCTGGTGCTGCCGCCACCACCCCTCGC
GAGAAGAGCAGTCCCAAGAAGGATATATGGGGTCATGTCGCCAAGGCTAC
CCGTGAAGAGCAACCCCGTTACGCAAACGCCAATGAACGCAAGGCAGAGC
GTTCCCGCCGGGTGAAGATGCTGGGAGGTTATGATTCCATATCTGATTAT
TTCGAACAGGAGGGGGTGTCCTTGTTCCTGGTCCTGGTGTTCCCCGCGTT
CGTGAAAGTAGCCCCCCGTCTCATCGCTCTGGCGCAAGTCAAATTGTTGC
TGCTCCAGGAATTAATGAGCAGGATGGGTGACATGTGGCACTAAATGCCC
ACTCTCTTTTCCATTCTGGGCGTGGCTCTCTCCCTTGCCTCCACCTCGTA
CTGTTTTCAACTGCACATGACCGTGGGCGGCGACTTGCAAACGCAGCGAA
AGCAGCGTGTCGCCGGTTCTTCTGCGGCCAATCCCGCTGCCAGCACGACG
CACCAGGGACCTCCGCCCGCCATGGACAGCATCAGGACGACCCATACGCT
GTCAAACAATATTAATGG back to top
|