jgi.p|Nanoce1779_2|593318, mRNA_5965 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593318
Unique NamemRNA_5965
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length957
Alignment locationscaffold_14:202718..203674 -

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Properties
Property NameValue
TranscriptId593404
TrackFilteredModels2
ProteinId593318
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:202718..203674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593318gene_5965Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593318mRNA_5965-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5965CDS_5965Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5965 ID=mRNA_5965|Name=jgi.p|Nanoce1779_2|593318|organism=Nannochloropsis oceanica|type=mRNA|length=957bp
ACAGGAAGAGACGTCCTTCCATCGTTACCACCTACCCATCTATGGCCGAC
GAGCAGCAAGCTCCCGTCATCTCTCCTTCTCCCCCCGCGTCCTCCACCTG
CTCCTCCACATCCGTTCCACCTCAACGAAAAAAGAAAAAATGGTTCCCCC
TTGAGTCCAACCCAGCCGTCATGCGAAAATACGTCAGAAGCCTCGGCCTG
CTCCCAACTTTCTACACATTTAATGACATCCTCTCTACAGAAGACTGGGC
CTTGGACATGGTTCTCCCTCCCGTCCTTGCCGTCATCTTCCTCTACCCTA
TTAAGGCTCCCGCTGAAACGCTGCGCCGAGAGGAAGACGCGCGTATCAAA
GAAGAAGGCCAGGTTCTTTCATCCCAGCTTTTCTTCACGAAGCAGACTGT
AGGAAATGCCTGTGGCACCGTCGGCCTCATCCACGCCATCCTCAACAACA
AAGATAAACTCGAATTTGCCTCTGGTAGTTTCTTAGAGAATTTCGAGAAA
AACACACAGGGGAAAACGCCCGATGAGCGTGCCGTCATCCTAGAGGAGGA
TGAGGGCTTAGACAGGGCGCACGAAAGCGCCGCAGCGGAAGGCCAGAGCA
GCCAGATCTCAATGGAGGAGGTTCTGAACACGCACTTTATCACGTTTGTG
GAGAAGGAAGGGTGTCTGTACGAATTGGATGGGCGGAAGAATTTTCCGAT
TAACCATGGTCCATCCTCACCCGACACTTTACTGAGAGATGCCATGGCGG
TGGTTCGGCAGGTGATTGCACGGGATCCGGAGGAATTGAGATTCACGTTG
GTGGCGTTAAGTAGTGCCGCTGGGGACGATGGCTGAAGGTCGAGGAGGAG
GAGGAGGAGTAGTGGTTTGGGAGGGGAAAGGGAGGAGGAGGAGGAGGAGG
ATGGAAAGGAAAGACGGGCAGGTGGAGCAGGATCTGGGTTGAGTGGCCCA
TGCGGAG
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protein sequence of jgi.p|Nanoce1779_2|593318

>mRNA_5965-protein ID=mRNA_5965-protein|Name=jgi.p|Nanoce1779_2|593318|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MADEQQAPVISPSPPASSTCSSTSVPPQRKKKKWFPLESNPAVMRKYVRS
LGLLPTFYTFNDILSTEDWALDMVLPPVLAVIFLYPIKAPAETLRREEDA
RIKEEGQVLSSQLFFTKQTVGNACGTVGLIHAILNNKDKLEFASGSFLEN
FEKNTQGKTPDERAVILEEDEGLDRAHESAAAEGQSSQISMEEVLNTHFI
TFVEKEGCLYELDGRKNFPINHGPSSPDTLLRDAMAVVRQVIARDPEELR
FTLVALSSAAGDDG*
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mRNA from alignment at scaffold_14:202718..203674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5965 ID=mRNA_5965|Name=jgi.p|Nanoce1779_2|593318|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at scaffold_14:202718..203674- (Nannochloropsis oceanica)
ACAGGAAGAGACGTCCTTCCATCGTTACCACCTACCCATCTATGGCCGAC
GAGCAGCAAGCTCCCGTCATCTCTCCTTCTCCCCCCGCGTCCTCCACCTG
CTCCTCCACATCCGTTCCACCTCAACGAAAAAAGAAAAAATGGTTCCCCC
TTGAGTCCAACCCAGCCGTCATGCGAAAATACGTCAGAAGCCTCGGCCTG
CTCCCAACTTTCTACACATTTAATGACATCCTCTCTACAGAAGACTGGGC
CTTGGACATGGTTCTCCCTCCCGTCCTTGCCGTCATCTTCCTCTACCCTA
TTAAGGCTCCCGCTGAAACGCTGCGCCGAGAGGAAGACGCGCGTATCAAA
GAAGAAGGCCAGGTTCTTTCATCCCAGCTTTTCTTCACGAAGCAGACTGT
AGGAAATGCCTGTGGCACCGTCGGCCTCATCCACGCCATCCTCAACAACA
AAGATAAACTCGAATTTGCCTCTGGTAGTTTCTTAGAGAATTTCGAGAAA
AACACACAGGGGAAAACGCCCGATGAGCGTGCCGTCATCCTAGAGGAGGA
TGAGGGCTTAGACAGGGCGCACGAAAGCGCCGCAGCGGAAGGCCAGAGCA
GCCAGATCTCAATGGAGGAGGTTCTGAACACGCACTTTATCACGTTTGTG
GAGAAGGAAGGGTGTCTGTACGAATTGGATGGGCGGAAGAATTTTCCGAT
TAACCATGGTCCATCCTCACCCGACACTTTACTGAGAGATGCCATGGCGG
TGGTTCGGCAGGTGATTGCACGGGATCCGGAGGAATTGAGATTCACGTTG
GTGGCGTTAAGTAGTGCCGCTGGGGACGATGGCTGAAGGTCGAGGAGGAG
GAGGAGGAGTAGTGGTTTGGGAGGGGAAAGGGAGGAGGAGGAGGAGGAGG
ATGGAAAGGAAAGACGGGCAGGTGGAGCAGGATCTGGGTTGAGTGGCCCA
TGCGGAG
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Coding sequence (CDS) from alignment at scaffold_14:202718..203674-

>mRNA_5965 ID=mRNA_5965|Name=jgi.p|Nanoce1779_2|593318|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_14:202718..203674- (Nannochloropsis oceanica)
ATGGCCGACGAGCAGCAAGCTCCCGTCATCTCTCCTTCTCCCCCCGCGTC
CTCCACCTGCTCCTCCACATCCGTTCCACCTCAACGAAAAAAGAAAAAAT
GGTTCCCCCTTGAGTCCAACCCAGCCGTCATGCGAAAATACGTCAGAAGC
CTCGGCCTGCTCCCAACTTTCTACACATTTAATGACATCCTCTCTACAGA
AGACTGGGCCTTGGACATGGTTCTCCCTCCCGTCCTTGCCGTCATCTTCC
TCTACCCTATTAAGGCTCCCGCTGAAACGCTGCGCCGAGAGGAAGACGCG
CGTATCAAAGAAGAAGGCCAGGTTCTTTCATCCCAGCTTTTCTTCACGAA
GCAGACTGTAGGAAATGCCTGTGGCACCGTCGGCCTCATCCACGCCATCC
TCAACAACAAAGATAAACTCGAATTTGCCTCTGGTAGTTTCTTAGAGAAT
TTCGAGAAAAACACACAGGGGAAAACGCCCGATGAGCGTGCCGTCATCCT
AGAGGAGGATGAGGGCTTAGACAGGGCGCACGAAAGCGCCGCAGCGGAAG
GCCAGAGCAGCCAGATCTCAATGGAGGAGGTTCTGAACACGCACTTTATC
ACGTTTGTGGAGAAGGAAGGGTGTCTGTACGAATTGGATGGGCGGAAGAA
TTTTCCGATTAACCATGGTCCATCCTCACCCGACACTTTACTGAGAGATG
CCATGGCGGTGGTTCGGCAGGTGATTGCACGGGATCCGGAGGAATTGAGA
TTCACGTTGGTGGCGTTAAGTAGTGCCGCTGGGGACGATGGCTGA
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Synonyms
Publications