jgi.p|Nanoce1779_2|593287, mRNA_5959 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593287
Unique NamemRNA_5959
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1194
Alignment locationscaffold_14:177091..178720 -

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Properties
Property NameValue
TranscriptId593373
TrackFilteredModels2
ProteinId593287
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:177091..178720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593287gene_5959Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593287mRNA_5959-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5959CDS_5959Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5959 ID=mRNA_5959|Name=jgi.p|Nanoce1779_2|593287|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
GCCGCCGTTAGTGAGGGTGGCGGATGGGAGCAGCAACAGCAGCAACAATG
AAGCACGAGGAGGAGGAGGAGGAGGAGGAGGATGTCCCGCTCGAGGTCCG
CGCGCACGTGGGAGAGATTGGGCGGCATTACAAGGCGCTCAGCAAGCGGC
ACATTTTCTGCCTTACTTTGCTTGCGGCAGCATCGATTTGGTTGGAAAAC
GACGACTGGGGCCTACTCCTCAAAAAAGCTTGCTTGGCCCTCTTTATCTC
CTCCTTCGCCGACTACCTCATCCGTCCTTCCCCTCTCCTGGACGATGTGA
CTGTCCGTCTGCAGAACCATGACATAATCCGTCCTTATTGCGACAAGCTC
GTGTGGTCCTCATACGTCTACGGACTTGCCGGGCTCTACTCCCTTTACCT
AGGCCAATACGCTTTCGGCACCCTCCAACTGGTCACATGCTGTGGCTCCA
CACTTTACCACCTCCGCAAGGAAGCGGTTTTCTTCAATTTTGACAACACC
TTCGCCTCCTCCCTCCTCCTCCTCACACTCTACGCGGGGGGGCTCTCGAT
TCACGTCCAGGATTGGGCACACCTGGTAGCCACTATCCTTGGCCTCCCCA
TTGCGGTGTTCCTCATCATCTTCTGTGGAATGCCGGCGTCGCTCGCGCGG
GAACCAGGGCATGGGACAGGGGCAAGAGGAGCAGTGGGGTCAGGGACGGG
CTGTCTGCCATGTTCGGAAGCAGCTCGGAGCGGTCCAGATCTGGGACGGC
CGGGCTTCCGGCTATGTGCAGGGGCCCAATACGATGATTGGCACACGGCA
TGGCACGTAGTCTCTGGGGCGGGGACTGTCGTCACGGCCTCCTTTTTCCA
ACACCACTGGCCAAGGCTGCAGTGCGGTGGGCCGAATTTTGGGGGGGGGT
TTCCGCATTTGCCCGTGGTGCCGACGGCGTGTGTGGTGCTGGCGTTGGGG
ATGAATATGGTGGGAAATATGGCGGGGATCATGCCGGTGTGTTAGAGGAG
GGTGAGGAGGGAAGAGGTGGGGGGAAGGCATTTTTGATAGACGCAGTGTA
CACACATACATATAATGGTGGTTTTGATAATGAAGATGAGTGGTATGGTA
AGTTACATACTCATTTACCTTTCATGCAAGAGGTGGAAAGAGGAGGCCAG
AAATGGGTAAGATCACCAACAAGACTAAAAAGATGGGCGAAACA
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protein sequence of jgi.p|Nanoce1779_2|593287

>mRNA_5959-protein ID=mRNA_5959-protein|Name=jgi.p|Nanoce1779_2|593287|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MGAATAATMKHEEEEEEEEDVPLEVRAHVGEIGRHYKALSKRHIFCLTLL
AAASIWLENDDWGLLLKKACLALFISSFADYLIRPSPLLDDVTVRLQNHD
IIRPYCDKLVWSSYVYGLAGLYSLYLGQYAFGTLQLVTCCGSTLYHLRKE
AVFFNFDNTFASSLLLLTLYAGGLSIHVQDWAHLVATILGLPIAVFLIIF
CGMPASLAREPGHGTGARGAVGSGTGCLPCSEAARSGPDLGRPGFRLCAG
AQYDDWHTAWHVVSGAGTVVTASFFQHHWPRLQCGGPNFGGGFPHLPVVP
TACVVLALGMNMVGNMAGIMPVC*
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mRNA from alignment at scaffold_14:177091..178720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5959 ID=mRNA_5959|Name=jgi.p|Nanoce1779_2|593287|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp|location=Sequence derived from alignment at scaffold_14:177091..178720- (Nannochloropsis oceanica)
GCCGCCGTTAGTGAGGGTGGCGGATGGGAGCAGCAACAGCAGCAACAATG
AAGCACGAGGAGGAGGAGGAGGAGGAGGAGGATGTCCCGCTCGAGGTCCG
CGCGCACGTGGGAGAGATTGGGCGGCATTACAAGGCGCTCAGCAAGCGGC
ACATTTTCTGCCTTACTTTGCTTGCGGCAGCATCGATTTGGTTGGAAAAC
GACGACTGGGGGTGAGTGTTGTGCGTTCCGGGGGACAGGAAGGAATCATG
GAAGGAATCTGTGGGATTGACAGAGAGTGCGATGTAGCCCTCGGCTACGG
TAAGCCAATATGACAGTGTATAAGTGTATGATGATGAGAGGATGTACAGC
GTCGGGCTAGCTTGCCGAGATTTCCTCCTTCTCACAATCCTTTCACTCCA
TTCCACTGATATTCCTCCTCCTCCCCACAACCCAACAGCCTACTCCTCAA
AAAAGCTTGCTTGGCCCTCTTTATCTCCTCCTTCGCCGACTACCTCATCC
GTCCTTCCCCTCTCCTGGACGATGTGACTGTCCGTCTGCAGAACCATGAC
ATAATCCGTCCTTATTGCGACAAGCTCGTGTGGTCCTCATACGTCTACGG
ACTTGCCGGGCTCTACTCCCTTTACCTAGGTATGTGTGCCTTCCTTATCC
CCTGCCTTCCACATTTCCTTCTTTTCTCCGCTCTCTCCCCTCCCTCCTTC
TCCCCTTCCTCCTTGCCTGCCTGCGCAATCCCTAATTTCCACCTTCACCA
CTTCTCCTCTCTCACCATTTCCCGAAAATCAGCTCACCACTGCTCCTTTC
CTCTCTCCCTCCTTCCCCACCTGTCTTCCCTCCGGTAGGCCAATACGCTT
TCGGCACCCTCCAACTGGTCACATGCTGTGGCTCCACACTTTACCACCTC
CGCAAGGAAGCGGTTTTCTTCAATTTTGACAACACCTTCGCCTCCTCCCT
CCTCCTCCTCACACTCTACGCGGGGGGGCTCTCGATTCACGTCCAGGATT
GGGCACACCTGGTAGCCACTATCCTTGGCCTCCCCATTGCGGTGTTCCTC
ATCATCTTCTGTGGAATGCCGGCGTCGCTCGCGCGGGAACCAGGGCATGG
GACAGGGGCAAGAGGAGCAGTGGGGTCAGGGACGGGCTGTCTGCCATGTT
CGGAAGCAGCTCGGAGCGGTCCAGATCTGGGACGGCCGGGCTTCCGGCTA
TGTGCAGGGGCCCAATACGATGATTGGCACACGGCATGGCACGTAGTCTC
TGGGGCGGGGACTGTCGTCACGGCCTCCTTTTTCCAACACCACTGGCCAA
GGCTGCAGTGCGGTGGGCCGAATTTTGGGGGGGGGTTTCCGCATTTGCCC
GTGGTGCCGACGGCGTGTGTGGTGCTGGCGTTGGGGATGAATATGGTGGG
AAATATGGCGGGGATCATGCCGGTGTGTTAGAGGAGGGTGAGGAGGGAAG
AGGTGGGGGGAAGGCATTTTTGATAGACGCAGTGTACACACATACATATA
ATGGTGGTTTTGATAATGAAGATGAGTGGTATGGTAAGTTACATACTCAT
TTACCTTTCATGCAAGAGGTGGAAAGAGGAGGCCAGAAATGGGTAAGATC
ACCAACAAGACTAAAAAGATGGGCGAAACA
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Coding sequence (CDS) from alignment at scaffold_14:177091..178720-

>mRNA_5959 ID=mRNA_5959|Name=jgi.p|Nanoce1779_2|593287|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_14:177091..178720- (Nannochloropsis oceanica)
GCCAATACGCTTTCGGCACCCTCCAACTGGTCACATGCTGTGGCTCCACA
CTTTACCACCTCCGCAAGGAAGCGGTTTTCTTCAATTTTGACAACACCTT
CGCCTCCTCCCTCCTCCTCCTCACACTCTACGCGGGGGGGCTCTCGATTC
ACGTCCAGGATTGGGCACACCTGGTAGCCACTATCCTTGGCCTCCCCATT
GCGGTGTTCCTCATCATCTTCTGTGGAATGCCGGCGTCGCTCGCGCGGGA
ACCAGGGCATGGGACAGGGGCAAGAGGAGCAGTGGGGTCAGGGACGGGCT
GTCTGCCATGTTCGGAAGCAGCTCGGAGCGGTCCAGATCTGGGACGGCCG
GGCTTCCGGCTATGTGCAGGGGCCCAATACGATGATTGGCACACGGCATG
GCACGTAGTCTCTGGGGCGGGGACTGTCGTCACGGCCTCCTTTTTCCAAC
ACCACTGGCCAAGGCTGCAGTGCGGTGGGCCGAATTTTGGGGGGGGGTTT
CCGCATTTGCCCGTGGTGCCGACGGCGTGTGTGGTGCTGGCGTTGGGGAT
GAATATGGTGGGAAATATGGCGGGGATCATGCCGGTGTGTTAGCCTACTC
CTCAAAAAAGCTTGCTTGGCCCTCTTTATCTCCTCCTTCGCCGACTACCT
CATCCGTCCTTCCCCTCTCCTGGACGATGTGACTGTCCGTCTGCAGAACC
ATGACATAATCCGTCCTTATTGCGACAAGCTCGTGTGGTCCTCATACGTC
TACGGACTTGCCGGGCTCTACTCCCTTTACCTAGATGGGAGCAGCAACAG
CAGCAACAATGAAGCACGAGGAGGAGGAGGAGGAGGAGGAGGATGTCCCG
CTCGAGGTCCGCGCGCACGTGGGAGAGATTGGGCGGCATTACAAGGCGCT
CAGCAAGCGGCACATTTTCTGCCTTACTTTGCTTGCGGCAGCATCGATTT
GGTTGGAAAACGACGACTGGGGGCCAATACGCTTTCGGCACCCTCCAACT
GGTCACATGCTGTGGCTCCACACTTTACCACCTCCGCAAGGAAGCGGTTT
TCTTCAATTTTGACAACACCTTCGCCTCCTCCCTCCTCCTCCTCACACTC
TACGCGGGGGGGCTCTCGATTCACGTCCAGGATTGGGCACACCTGGTAGC
CACTATCCTTGGCCTCCCCATTGCGGTGTTCCTCATCATCTTCTGTGGAA
TGCCGGCGTCGCTCGCGCGGGAACCAGGGCATGGGACAGGGGCAAGAGGA
GCAGTGGGGTCAGGGACGGGCTGTCTGCCATGTTCGGAAGCAGCTCGGAG
CGGTCCAGATCTGGGACGGCCGGGCTTCCGGCTATGTGCAGGGGCCCAAT
ACGATGATTGGCACACGGCATGGCACGTAGTCTCTGGGGCGGGGACTGTC
GTCACGGCCTCCTTTTTCCAACACCACTGGCCAAGGCTGCAGTGCGGTGG
GCCGAATTTTGGGGGGGGGTTTCCGCATTTGCCCGTGGTGCCGACGGCGT
GTGTGGTGCTGGCGTTGGGGATGAATATGGTGGGAAATATGGCGGGGATC
ATGCCGGTGTGTTAGCCTACTCCTCAAAAAAGCTTGCTTGGCCCTCTTTA
TCTCCTCCTTCGCCGACTACCTCATCCGTCCTTCCCCTCTCCTGGACGAT
GTGACTGTCCGTCTGCAGAACCATGACATAATCCGTCCTTATTGCGACAA
GCTCGTGTGGTCCTCATACGTCTACGGACTTGCCGGGCTCTACTCCCTTT
ACCTAGATGGGAGCAGCAACAGCAGCAACAATGAAGCACGAGGAGGAGGA
GGAGGAGGAGGAGGATGTCCCGCTCGAGGTCCGCGCGCACGTGGGAGAGA
TTGGGCGGCATTACAAGGCGCTCAGCAAGCGGCACATTTTCTGCCTTACT
TTGCTTGCGGCAGCATCGATTTGGTTGGAAAACGACGACTGGGGGCCAAT
ACGCTTTCGGCACCCTCCAACTGGTCACATGCTGTGGCTCCACACTTTAC
CACCTCCGCAAGGAAGCGGTTTTCTTCAATTTTGACAACACCTTCGCCTC
CTCCCTCCTCCTCCTCACACTCTACGCGGGGGGGCTCTCGATTCACGTCC
AGGATTGGGCACACCTGGTAGCCACTATCCTTGGCCTCCCCATTGCGGTG
TTCCTCATCATCTTCTGTGGAATGCCGGCGTCGCTCGCGCGGGAACCAGG
GCATGGGACAGGGGCAAGAGGAGCAGTGGGGTCAGGGACGGGCTGTCTGC
CATGTTCGGAAGCAGCTCGGAGCGGTCCAGATCTGGGACGGCCGGGCTTC
CGGCTATGTGCAGGGGCCCAATACGATGATTGGCACACGGCATGGCACGT
AGTCTCTGGGGCGGGGACTGTCGTCACGGCCTCCTTTTTCCAACACCACT
GGCCAAGGCTGCAGTGCGGTGGGCCGAATTTTGGGGGGGGGTTTCCGCAT
TTGCCCGTGGTGCCGACGGCGTGTGTGGTGCTGGCGTTGGGGATGAATAT
GGTGGGAAATATGGCGGGGATCATGCCGGTGTGTTAGCCTACTCCTCAAA
AAAGCTTGCTTGGCCCTCTTTATCTCCTCCTTCGCCGACTACCTCATCCG
TCCTTCCCCTCTCCTGGACGATGTGACTGTCCGTCTGCAGAACCATGACA
TAATCCGTCCTTATTGCGACAAGCTCGTGTGGTCCTCATACGTCTACGGA
CTTGCCGGGCTCTACTCCCTTTACCTAGATGGGAGCAGCAACAGCAGCAA
CAATGAAGCACGAGGAGGAGGAGGAGGAGGAGGAGGATGTCCCGCTCGAG
GTCCGCGCGCACGTGGGAGAGATTGGGCGGCATTACAAGGCGCTCAGCAA
GCGGCACATTTTCTGCCTTACTTTGCTTGCGGCAGCATCGATTTGGTTGG
AAAACGACGACTGGGG
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Synonyms
Publications