jgi.p|Nanoce1779_2|593270, mRNA_5956 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593270
Unique NamemRNA_5956
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1629
Alignment locationscaffold_14:168676..170304 -

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Properties
Property NameValue
TranscriptId593356
TrackFilteredModels2
ProteinId593270
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:168676..170304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593270gene_5956Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593270mRNA_5956-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5956CDS_5956Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5956 ID=mRNA_5956|Name=jgi.p|Nanoce1779_2|593270|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp
CTTCGAAGTCAGAAGGCAGCTAAGCTCCTTTTTCGCTTTCGTGGCTCGCC
CGGGTGATTCTGGCGACTACCCTGCCCTGTCTTCGGTAATATATGGTGCC
ATAAATCGTTTGCGTGAGGCGTAGCATAAGGTGGGTGGGTTTTATCGCGG
GCAGGGCTTGTATTTGGCGACCCCCTGCGGTCTGGCAAAAGTTTTCAGGC
CGACCTGCTCCTTCTCGCCGCGCCTGCCGCCCACTGGACAAGCAAGGACG
TCCTGCTACAAGCAAACGCACCATACCCGCCAACACTTACGTGACACACT
TGACATCCATATACTTTCAACATAAGACACAGCCGCCCTGCGCATTATGG
GTTCTTTGACCGCATCAATCGGGTAAAGCAAAGCAAACCGTCCGGCCCAT
CTTCGATCTTCGTGCCAACGTCGACCGCCCTCACTCCATCCCCAGTCCGT
CTAATAATGCCAGGCCATGTCACTGCTCACGCCCGCCCGCAGTGTCATTT
CATCCTTACTCCCTTTGTTCTTATCTCATTCTTCCTCTTTTTCCCAAAAC
CGGCGGTCAAATCCCAAGCTAATAACGACGCCTGCCCTGTCCTTCGCCCC
CCACCCCTCATCTACAACTCCACCGCACCCTTTGCCACGGACTTCACAGA
CAAGACACAAACCCTGACATTCCTGCACGAGAACTATGGTCGACTTTATA
CAAACAAAGTGCGGGCATGCCGACGCACAGACCACTTGCTCTACAACACG
TCCTTGGAAGGAGCCGGTCTCTCAACCGACGCGCGAGGGTTGCGCATCGT
CCAAGACAACATCGGTGGGAGTGTCTGTGACCGCAATTCGGAAATTGCCA
CCGGCCATTTACTCACCAAATTTTACATACAAGGAGGTCGCATTGACTTG
ACTGCGCGGATAGGCTATGGACCGGAGGCAGGGCCGGGGTACCAGAGCGA
GGACAGCTTTTCGTGCTTTGGCCTTTATATCCACGACACTGTCTCTCAAT
ATGGCTATCGTAACGAAGCTTCAATGTGCGTGTCCTCTCATGACCCTACC
ACTGTGCGGATGGGTGTGTGGAATGGCTCGCCTGCTGATCGGGAGGAAGC
GAAGCAGGTAAACGTAAAGAGAGACCTCTCGCAGGCTTTCTACACTTATA
GCATTGAGTGGGGGCCGACACGGGTGAGATTTTGGTTGGATGATTTTCTA
TTGTGGGATATGCCAGGGATGAGCTTTTGTGCAGGTGCCAAGGCAGCGGA
GGTGGATAAAGCCATGAGAAATGGAGGGAAAGGAGGTGCACGGTTACCTT
ACGAGCCAATGTCAATTCGAATCATTTTGAGGCCTCTGGGTGTAGCGTAC
CGAGGAACTAGCTACATGGACGTGACCCGATTTGCGTACTCACCCTTGCC
TCTACTCAAAGAGACGGAGCGGGGAAGCTCGGACTTTTTTGTGTCGTCCC
CGGCGGGGAAGAAGAGGAGGGTGGAAGGGTGGTGGTGGTGTGTGTATGGA
GGAATGACCTTGGTGTGGTGGTGCATGAGTATGTGGGTAATGTGGGTAGG
GACGTGCATATAGCCAAAGAAAATTGTAGAGGACTGTGGTTAGCTAGTTG
ATGAACGAACAAAAGCTGAGTTATCATCA
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protein sequence of jgi.p|Nanoce1779_2|593270

>mRNA_5956-protein ID=mRNA_5956-protein|Name=jgi.p|Nanoce1779_2|593270|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MPGHVTAHARPQCHFILTPFVLISFFLFFPKPAVKSQANNDACPVLRPPP
LIYNSTAPFATDFTDKTQTLTFLHENYGRLYTNKVRACRRTDHLLYNTSL
EGAGLSTDARGLRIVQDNIGGSVCDRNSEIATGHLLTKFYIQGGRIDLTA
RIGYGPEAGPGYQSEDSFSCFGLYIHDTVSQYGYRNEASMCVSSHDPTTV
RMGVWNGSPADREEAKQVNVKRDLSQAFYTYSIEWGPTRVRFWLDDFLLW
DMPGMSFCAGAKAAEVDKAMRNGGKGGARLPYEPMSIRIILRPLGVAYRG
TSYMDVTRFAYSPLPLLKETERGSSDFFVSSPAGKKRRVEGWWWCVYGGM
TLVWWCMSMWVMWVGTCI*
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mRNA from alignment at scaffold_14:168676..170304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5956 ID=mRNA_5956|Name=jgi.p|Nanoce1779_2|593270|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp|location=Sequence derived from alignment at scaffold_14:168676..170304- (Nannochloropsis oceanica)
CTTCGAAGTCAGAAGGCAGCTAAGCTCCTTTTTCGCTTTCGTGGCTCGCC
CGGGTGATTCTGGCGACTACCCTGCCCTGTCTTCGGTAATATATGGTGCC
ATAAATCGTTTGCGTGAGGCGTAGCATAAGGTGGGTGGGTTTTATCGCGG
GCAGGGCTTGTATTTGGCGACCCCCTGCGGTCTGGCAAAAGTTTTCAGGC
CGACCTGCTCCTTCTCGCCGCGCCTGCCGCCCACTGGACAAGCAAGGACG
TCCTGCTACAAGCAAACGCACCATACCCGCCAACACTTACGTGACACACT
TGACATCCATATACTTTCAACATAAGACACAGCCGCCCTGCGCATTATGG
GTTCTTTGACCGCATCAATCGGGTAAAGCAAAGCAAACCGTCCGGCCCAT
CTTCGATCTTCGTGCCAACGTCGACCGCCCTCACTCCATCCCCAGTCCGT
CTAATAATGCCAGGCCATGTCACTGCTCACGCCCGCCCGCAGTGTCATTT
CATCCTTACTCCCTTTGTTCTTATCTCATTCTTCCTCTTTTTCCCAAAAC
CGGCGGTCAAATCCCAAGCTAATAACGACGCCTGCCCTGTCCTTCGCCCC
CCACCCCTCATCTACAACTCCACCGCACCCTTTGCCACGGACTTCACAGA
CAAGACACAAACCCTGACATTCCTGCACGAGAACTATGGTCGACTTTATA
CAAACAAAGTGCGGGCATGCCGACGCACAGACCACTTGCTCTACAACACG
TCCTTGGAAGGAGCCGGTCTCTCAACCGACGCGCGAGGGTTGCGCATCGT
CCAAGACAACATCGGTGGGAGTGTCTGTGACCGCAATTCGGAAATTGCCA
CCGGCCATTTACTCACCAAATTTTACATACAAGGAGGTCGCATTGACTTG
ACTGCGCGGATAGGCTATGGACCGGAGGCAGGGCCGGGGTACCAGAGCGA
GGACAGCTTTTCGTGCTTTGGCCTTTATATCCACGACACTGTCTCTCAAT
ATGGCTATCGTAACGAAGCTTCAATGTGCGTGTCCTCTCATGACCCTACC
ACTGTGCGGATGGGTGTGTGGAATGGCTCGCCTGCTGATCGGGAGGAAGC
GAAGCAGGTAAACGTAAAGAGAGACCTCTCGCAGGCTTTCTACACTTATA
GCATTGAGTGGGGGCCGACACGGGTGAGATTTTGGTTGGATGATTTTCTA
TTGTGGGATATGCCAGGGATGAGCTTTTGTGCAGGTGCCAAGGCAGCGGA
GGTGGATAAAGCCATGAGAAATGGAGGGAAAGGAGGTGCACGGTTACCTT
ACGAGCCAATGTCAATTCGAATCATTTTGAGGCCTCTGGGTGTAGCGTAC
CGAGGAACTAGCTACATGGACGTGACCCGATTTGCGTACTCACCCTTGCC
TCTACTCAAAGAGACGGAGCGGGGAAGCTCGGACTTTTTTGTGTCGTCCC
CGGCGGGGAAGAAGAGGAGGGTGGAAGGGTGGTGGTGGTGTGTGTATGGA
GGAATGACCTTGGTGTGGTGGTGCATGAGTATGTGGGTAATGTGGGTAGG
GACGTGCATATAGCCAAAGAAAATTGTAGAGGACTGTGGTTAGCTAGTTG
ATGAACGAACAAAAGCTGAGTTATCATCA
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Coding sequence (CDS) from alignment at scaffold_14:168676..170304-

>mRNA_5956 ID=mRNA_5956|Name=jgi.p|Nanoce1779_2|593270|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_14:168676..170304- (Nannochloropsis oceanica)
ATGCCAGGCCATGTCACTGCTCACGCCCGCCCGCAGTGTCATTTCATCCT
TACTCCCTTTGTTCTTATCTCATTCTTCCTCTTTTTCCCAAAACCGGCGG
TCAAATCCCAAGCTAATAACGACGCCTGCCCTGTCCTTCGCCCCCCACCC
CTCATCTACAACTCCACCGCACCCTTTGCCACGGACTTCACAGACAAGAC
ACAAACCCTGACATTCCTGCACGAGAACTATGGTCGACTTTATACAAACA
AAGTGCGGGCATGCCGACGCACAGACCACTTGCTCTACAACACGTCCTTG
GAAGGAGCCGGTCTCTCAACCGACGCGCGAGGGTTGCGCATCGTCCAAGA
CAACATCGGTGGGAGTGTCTGTGACCGCAATTCGGAAATTGCCACCGGCC
ATTTACTCACCAAATTTTACATACAAGGAGGTCGCATTGACTTGACTGCG
CGGATAGGCTATGGACCGGAGGCAGGGCCGGGGTACCAGAGCGAGGACAG
CTTTTCGTGCTTTGGCCTTTATATCCACGACACTGTCTCTCAATATGGCT
ATCGTAACGAAGCTTCAATGTGCGTGTCCTCTCATGACCCTACCACTGTG
CGGATGGGTGTGTGGAATGGCTCGCCTGCTGATCGGGAGGAAGCGAAGCA
GGTAAACGTAAAGAGAGACCTCTCGCAGGCTTTCTACACTTATAGCATTG
AGTGGGGGCCGACACGGGTGAGATTTTGGTTGGATGATTTTCTATTGTGG
GATATGCCAGGGATGAGCTTTTGTGCAGGTGCCAAGGCAGCGGAGGTGGA
TAAAGCCATGAGAAATGGAGGGAAAGGAGGTGCACGGTTACCTTACGAGC
CAATGTCAATTCGAATCATTTTGAGGCCTCTGGGTGTAGCGTACCGAGGA
ACTAGCTACATGGACGTGACCCGATTTGCGTACTCACCCTTGCCTCTACT
CAAAGAGACGGAGCGGGGAAGCTCGGACTTTTTTGTGTCGTCCCCGGCGG
GGAAGAAGAGGAGGGTGGAAGGGTGGTGGTGGTGTGTGTATGGAGGAATG
ACCTTGGTGTGGTGGTGCATGAGTATGTGGGTAATGTGGGTAGGGACGTG
CATATAG
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Synonyms
Publications