jgi.p|Nanoce1779_2|593264, mRNA_5954 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593264
Unique Name	mRNA_5954
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1684
Alignment location	scaffold_14:165826..167863 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593350
Track	FilteredModels2
ProteinId	593264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:165826..167863 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593264	gene_5954	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593264	mRNA_5954-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5954	CDS_5954	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:165826..167863+
coding sequence from alignment at scaffold_14:165826..167863+

mRNA sequence

>mRNA_5954 ID=mRNA_5954|Name=jgi.p|Nanoce1779_2|593264|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp
ACAGCAACAACAGACCCACACACAACCATCGCACCGCGTGCGGCACCATG
ATGATGGACTTGGACGACGACGAAGGTCCCCTTAAAATGGACGACGGGGA
AGACAGCGGGGGCAGCCCTGGAGGCAGCGACGACTACGTGTTGCCTCGAC
CCCCCTCCCCTGGCGGCCTCCAACGCACCTTTACGCCTGTCGACCACTAC
GACACCTGTTCACCCTTGCCCCCCTTGGCCCCTTCGTTATCCTCGCACCA
TGGTGGCGGCAGCGGTGGAGATGGGTTGCTCGGCAGCAACGGCCACGGGA
ATGGAGGAGGCGGGTATCACCTTCCCCACCCTGCCGCCTCTCCTTTCCCC
AGCACCAAGTCCAACCACCACTCCTATTCCTCCTCCATGGCCCCCCCACC
TGCCCCGATGCGTGGAAGCGGCAGCCGGGAGTTGAAGCGGGGGTATGCCA
TGCATGGTGTCCTTGGTGGAGGAAGTGGTGGGTATTTTCCCGATGATAGT
CCTTCGGATGTCATGGCCTTTCCACCTCCTACTCCTTATAAGGGATCTCA
CCCTACCAGCCATGCCCCGCCTTCGGTAGGGAAGCATTCTACCCCTTCCT
CCCTCCTTGGTCATCACCACCACCACCATAGCCAATACCAGCAGCACCAG
CACCCGTCCTCCTCCTCAAGACGCAGCAGCAAAAGCAAAAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAACAATACCCACAGCACCGTCTCTCGGTTCC
AAGCTGACTTTGACGTTGTCCGTGTTATCGGCTCTGGAAGCTTTGGTGAG
GTTTATGAGGCTCGATCAAGAGTGGATGGAGTTGAGTATGCAGTTAAGTG
TACCCGTAAGAGGTTCAAAGGCCAGGCAGATCGCGAACGGTATCTACAGG
AGGTGAAGGCACTGGCGAAGGTCTGCGCAGCGGACAGTAGCGAGGAGGTG
CTGCACGTGGTGAGGTACCACCAGGCGTGGATCGAAGACCATCGGTTGTT
CATGCAGACGGAGTTGTGCGAGGAGAGCTTAGAGCAGGCCATACGGGAGG
GGGAGCCCGGGGGAAGGATGGGACTGGAAGAGGTGTTTGACTTCGGGCGG
CAGATGCTCTTGGCGCTGGACGTATTGCATCGGCATGGCTTGGTGCATCT
GGACGTGAAGCCCGCCAACATCTTCCTCAAAGCCGGCCTGTTCAAACTCG
GGGATTTCGGACTGGTGGCGTCTGTGAACAGCAGCGACGGGTGGGGGGAC
TGCCTTCAAGAGGGCGATTCGCGGTACATGTCCGCGGAACTACTGCAGGA
CGGTCCGAAAGACTTGACCAAGTGCGACATTTTCTCGCTTGGCGCAACGG
TGTATGAGATCTGTCGGGGGAGGCCCTTGCCACCGAATGGGGAGGAATGG
CACTCCCTGCGAAGTGGGTCGTTGCCGGCGTTGGAATTTGGAGGACGGGT
GGAGGCGGGTGTTATGAAGGATTTGATGAAAGTGCTGACGCAGATGATGG
CGCCCGATCCTTCTCAACGTCCCTCTGCCGCCGTCCTCCTGACACACCCA
CGCTTCCGCTCTCGACTCGAACGTGAATTGCTCAAGGAAAAAATGAAGAG
CAAGAGTTTGGCCAAGGCCCTGGTACAGAACCAGCAGCAGCAGAGTAAGG
GCCGGAAGCTTGAAAGAACGCAAACTTATTAGAG

protein sequence of jgi.p|Nanoce1779_2|593264

>mRNA_5954-protein ID=mRNA_5954-protein|Name=jgi.p|Nanoce1779_2|593264|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MMMDLDDDEGPLKMDDGEDSGGSPGGSDDYVLPRPPSPGGLQRTFTPVDH
YDTCSPLPPLAPSLSSHHGGGSGGDGLLGSNGHGNGGGGYHLPHPAASPF
PSTKSNHHSYSSSMAPPPAPMRGSGSRELKRGYAMHGVLGGGSGGYFPDD
SPSDVMAFPPPTPYKGSHPTSHAPPSVGKHSTPSSLLGHHHHHHSQYQQH
QHPSSSSRRSSKSKSSSSSSSSSNNNTHSTVSRFQADFDVVRVIGSGSFG
EVYEARSRVDGVEYAVKCTRKRFKGQADRERYLQEVKALAKVCAADSSEE
VLHVVRYHQAWIEDHRLFMQTELCEESLEQAIREGEPGGRMGLEEVFDFG
RQMLLALDVLHRHGLVHLDVKPANIFLKAGLFKLGDFGLVASVNSSDGWG
DCLQEGDSRYMSAELLQDGPKDLTKCDIFSLGATVYEICRGRPLPPNGEE
WHSLRSGSLPALEFGGRVEAGVMKDLMKVLTQMMAPDPSQRPSAAVLLTH
PRFRSRLERELLKEKMKSKSLAKALVQNQQQQSKGRKLERTQTY*

mRNA from alignment at scaffold_14:165826..167863+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5954 ID=mRNA_5954|Name=jgi.p|Nanoce1779_2|593264|organism=Nannochloropsis oceanica|type=mRNA|length=2038bp|location=Sequence derived from alignment at scaffold_14:165826..167863+ (Nannochloropsis oceanica)
ACAGCAACAACAGACCCACACACAACCATCGCACCGCGTGCGGCACCATG
ATGATGGACTTGGACGACGACGAAGGTCCCCTTAAAATGGACGACGGGGA
AGACAGCGGGGGCAGCCCTGGAGGCAGCGACGACTACGTGTTGCCTCGAC
CCCCCTCCCCTGGCGGCCTCCAACGCACCTTTACGCCTGTCGACCACTAC
GACACCTGTTCACCCTTGCCCCCCTTGGCCCCTTCGTTATCCTCGCACCA
TGGTGGCGGCAGCGGTGGAGATGGGTTGCTCGGCAGCAACGGCCACGGGA
ATGGAGGAGGCGGGTATCACCTTCCCCACCCTGCCGCCTCTCCTTTCCCC
AGCACCAAGTCCAACCACCACTCCTATTCCTCCTCCATGGCCCCCCCACC
TGCCCCGATGCGTGGAAGCGGCAGCCGGGAGTTGAAGCGGGGGTATGCCA
TGCATGGTGTCCTTGGTGGAGGAAGTGGTGGGTATTTTCCCGATGATAGT
CCTTCGGATGTCATGGCCTTTCCACCTCCTACTCCTTATAAGGGATCTCA
CCCTACCAGCCATGCCCCGCCTTCGGTAGGGAAGCATTCTACCCCTTCCT
CCCTCCTTGGTCATCACCACCACCACCATAGCCAATACCAGCAGCACCAG
CACCCGTCCTCCTCCTCAAGACGCAGCAGCAAAAGCAAAAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAACAATACCCACAGCACCGTCTCTCGGTTCC
AAGCTGACTTTGACGTTGTCCGTGTTATCGGCTCTGGAAGCTTTGGTGAG
GTTTATGAGGCTCGATCAAGAGTGGATGGAGTTGAGTATGCAGTTAAGTG
TACCCGTAAGAGGTTCAAAGGCCAGGCAGATCGCGAACGGTATCTACAGG
AGGTGAAGGCACTGGCGAAGGTCTGCGCAGCGGACAGTAGCGAGGAGGTG
CTGCACGTGGTGAGGTACCACCAGGCGTGGATCGAAGACCATCGGTTGTT
CATGCAGACGGAGTTGTGCGAGGAGAGCTTAGAGCAGGCCATACGGGAGG
GGGAGCCCGGGGGAAGGATGGGACTGGAAGAGGTGTTTGACTTCGGGCGG
CAGATGCTCTTGGCGCTGGACGTATTGCATCGGCATGGCTTGGTGCATCT
GGACGTGAAGGTGAGATGGGAAGAAAGCAGTACGGGGGGAAGGGCGGGAG
GGCGGGCGGGCGGGAGGAACGCTCCTCATATGCTCAACAACATATCGACT
TTCCTTCCCTCCCTCCTTCCTTCTCTTCCCCTTTTACAGCCCGCCAACAT
CTTCCTCAAAGCCGGCCTGTTCAAACTCGGGGATTTCGGACTGGTGGCGT
CTGTGAACAGCAGCGACGGGTGGGGGGACTGCCTTCAAGAGGGCGATTCG
CGGTACATGTCCGCGGAACTACTGCAGGACGGTCCGAAAGACTTGACCAA
GTGCGACATTTTCTCGCTTGGCGCAACGGTGTATGAGATCTGTCGGGGGA
GGCCCTTGCCACCGAATGGGGAGGAATGGCACTCCCTGCGAAGTGGGTCG
TTGCCGGCGTTGGAATTTGGAGGACGGGTGGAGGCGGGTGTTATGAAGGA
TTTGATGAAAGTGCTGACGCAGATGATGGCGGTGAGTAGCAGGGAGGGAG
AGAAGGAGGAAGGAGAGGAGGGAAGGAGTGGTTGACGAGGTGATAATTGG
TGCTACAGTATTGTGGTGTGTCGTCGAAGGGAGGGAGGGAGGGAGGGATA
GATGGATGGATTGATGGATTTCGATCGCGCAAACTTACACAAAATCTTTC
CCCCCCTCTCGCTTCTCCCATCCCTTCCTTTCTCCACTCCGTCCTGGTCA
CTACAGCCCGATCCTTCTCAACGTCCCTCTGCCGCCGTCCTCCTGACACA
CCCACGCTTCCGCTCTCGACTCGAACGTGAATTGCTCAAGGAAAAAATGA
AGAGCAAGAGTTTGGCCAAGGCCCTGGTACAGAACCAGCAGCAGCAGAGT
AAGGGCCGGAAGCTTGAAAGAACGCAAACTTATTAGAG

Coding sequence (CDS) from alignment at scaffold_14:165826..167863+

>mRNA_5954 ID=mRNA_5954|Name=jgi.p|Nanoce1779_2|593264|organism=Nannochloropsis oceanica|type=CDS|length=4905bp|location=Sequence derived from alignment at scaffold_14:165826..167863+ (Nannochloropsis oceanica)
ATGATGATGGACTTGGACGACGACGAAGGTCCCCTTAAAATGGACGACGG
GGAAGACAGCGGGGGCAGCCCTGGAGGCAGCGACGACTACGTGTTGCCTC
GACCCCCCTCCCCTGGCGGCCTCCAACGCACCTTTACGCCTGTCGACCAC
TACGACACCTGTTCACCCTTGCCCCCCTTGGCCCCTTCGTTATCCTCGCA
CCATGGTGGCGGCAGCGGTGGAGATGGGTTGCTCGGCAGCAACGGCCACG
GGAATGGAGGAGGCGGGTATCACCTTCCCCACCCTGCCGCCTCTCCTTTC
CCCAGCACCAAGTCCAACCACCACTCCTATTCCTCCTCCATGGCCCCCCC
ACCTGCCCCGATGCGTGGAAGCGGCAGCCGGGAGTTGAAGCGGGGGTATG
CCATGCATGGTGTCCTTGGTGGAGGAAGTGGTGGGTATTTTCCCGATGAT
AGTCCTTCGGATGTCATGGCCTTTCCACCTCCTACTCCTTATAAGGGATC
TCACCCTACCAGCCATGCCCCGCCTTCGGTAGGGAAGCATTCTACCCCTT
CCTCCCTCCTTGGTCATCACCACCACCACCATAGCCAATACCAGCAGCAC
CAGCACCCGTCCTCCTCCTCAAGACGCAGCAGCAAAAGCAAAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAACAATACCCACAGCACCGTCTCTCGGT
TCCAAGCTGACTTTGACGTTGTCCGTGTTATCGGCTCTGGAAGCTTTGGT
GAGGTTTATGAGGCTCGATCAAGAGTGGATGGAGTTGAGTATGCAGTTAA
GTGTACCCGTAAGAGGTTCAAAGGCCAGGCAGATCGCGAACGGTATCTAC
AGGAGGTGAAGGCACTGGCGAAGGTCTGCGCAGCGGACAGTAGCGAGGAG
GTGCTGCACGTGGTGAGGTACCACCAGGCGTGGATCGAAGACCATCGGTT
GTTCATGCAGACGGAGTTGTGCGAGGAGAGCTTAGAGCAGGCCATACGGG
AGGGGGAGCCCGGGGGAAGGATGGGACTGGAAGAGGTGTTTGACTTCGGG
CGGCAGATGCTCTTGGCGCTGGACGTATTGCATCGGCATGGCTTGGTGCA
TCTGGACGTGAAGCCCGCCAACATCTTCCTCAAAGCCGGCCTGTTCAAAC
TCGGGGATTTCGGACTGGTGGCGTCTGTGAACAGCAGCGACGGGTGGGGG
GACTGCCTTCAAGAGGGCGATTCGCGGTACATGTCCGCGGAACTACTGCA
GGACGGTCCGAAAGACTTGACCAAGTGCGACATTTTCTCGCTTGGCGCAA
CGGTGTATGAGATCTGTCGGGGGAGGCCCTTGCCACCGAATGGGGAGGAA
TGGCACTCCCTGCGAAGTGGGTCGTTGCCGGCGTTGGAATTTGGAGGACG
GGTGGAGGCGGGTGTTATGAAGGATTTGATGAAAGTGCTGACGCAGATGA
TGGCGCCCGATCCTTCTCAACGTCCCTCTGCCGCCGTCCTCCTGACACAC
CCACGCTTCCGCTCTCGACTCGAACGTGAATTGCTCAAGGAAAAAATGAA
GAGCAAGAGTTTGGCCAAGGCCCTGGTACAGAACCAGCAGCAGCAGAGTA
AGGGCCGGAAGCTTGAAAGAACGCAAACTTATTAGATGATGATGGACTTG
GACGACGACGAAGGTCCCCTTAAAATGGACGACGGGGAAGACAGCGGGGG
CAGCCCTGGAGGCAGCGACGACTACGTGTTGCCTCGACCCCCCTCCCCTG
GCGGCCTCCAACGCACCTTTACGCCTGTCGACCACTACGACACCTGTTCA
CCCTTGCCCCCCTTGGCCCCTTCGTTATCCTCGCACCATGGTGGCGGCAG
CGGTGGAGATGGGTTGCTCGGCAGCAACGGCCACGGGAATGGAGGAGGCG
GGTATCACCTTCCCCACCCTGCCGCCTCTCCTTTCCCCAGCACCAAGTCC
AACCACCACTCCTATTCCTCCTCCATGGCCCCCCCACCTGCCCCGATGCG
TGGAAGCGGCAGCCGGGAGTTGAAGCGGGGGTATGCCATGCATGGTGTCC
TTGGTGGAGGAAGTGGTGGGTATTTTCCCGATGATAGTCCTTCGGATGTC
ATGGCCTTTCCACCTCCTACTCCTTATAAGGGATCTCACCCTACCAGCCA
TGCCCCGCCTTCGGTAGGGAAGCATTCTACCCCTTCCTCCCTCCTTGGTC
ATCACCACCACCACCATAGCCAATACCAGCAGCACCAGCACCCGTCCTCC
TCCTCAAGACGCAGCAGCAAAAGCAAAAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAACAATACCCACAGCACCGTCTCTCGGTTCCAAGCTGACTTTG
ACGTTGTCCGTGTTATCGGCTCTGGAAGCTTTGGTGAGGTTTATGAGGCT
CGATCAAGAGTGGATGGAGTTGAGTATGCAGTTAAGTGTACCCGTAAGAG
GTTCAAAGGCCAGGCAGATCGCGAACGGTATCTACAGGAGGTGAAGGCAC
TGGCGAAGGTCTGCGCAGCGGACAGTAGCGAGGAGGTGCTGCACGTGGTG
AGGTACCACCAGGCGTGGATCGAAGACCATCGGTTGTTCATGCAGACGGA
GTTGTGCGAGGAGAGCTTAGAGCAGGCCATACGGGAGGGGGAGCCCGGGG
GAAGGATGGGACTGGAAGAGGTGTTTGACTTCGGGCGGCAGATGCTCTTG
GCGCTGGACGTATTGCATCGGCATGGCTTGGTGCATCTGGACGTGAAGCC
CGCCAACATCTTCCTCAAAGCCGGCCTGTTCAAACTCGGGGATTTCGGAC
TGGTGGCGTCTGTGAACAGCAGCGACGGGTGGGGGGACTGCCTTCAAGAG
GGCGATTCGCGGTACATGTCCGCGGAACTACTGCAGGACGGTCCGAAAGA
CTTGACCAAGTGCGACATTTTCTCGCTTGGCGCAACGGTGTATGAGATCT
GTCGGGGGAGGCCCTTGCCACCGAATGGGGAGGAATGGCACTCCCTGCGA
AGTGGGTCGTTGCCGGCGTTGGAATTTGGAGGACGGGTGGAGGCGGGTGT
TATGAAGGATTTGATGAAAGTGCTGACGCAGATGATGGCGCCCGATCCTT
CTCAACGTCCCTCTGCCGCCGTCCTCCTGACACACCCACGCTTCCGCTCT
CGACTCGAACGTGAATTGCTCAAGGAAAAAATGAAGAGCAAGAGTTTGGC
CAAGGCCCTGGTACAGAACCAGCAGCAGCAGAGTAAGGGCCGGAAGCTTG
AAAGAACGCAAACTTATTAGATGATGATGGACTTGGACGACGACGAAGGT
CCCCTTAAAATGGACGACGGGGAAGACAGCGGGGGCAGCCCTGGAGGCAG
CGACGACTACGTGTTGCCTCGACCCCCCTCCCCTGGCGGCCTCCAACGCA
CCTTTACGCCTGTCGACCACTACGACACCTGTTCACCCTTGCCCCCCTTG
GCCCCTTCGTTATCCTCGCACCATGGTGGCGGCAGCGGTGGAGATGGGTT
GCTCGGCAGCAACGGCCACGGGAATGGAGGAGGCGGGTATCACCTTCCCC
ACCCTGCCGCCTCTCCTTTCCCCAGCACCAAGTCCAACCACCACTCCTAT
TCCTCCTCCATGGCCCCCCCACCTGCCCCGATGCGTGGAAGCGGCAGCCG
GGAGTTGAAGCGGGGGTATGCCATGCATGGTGTCCTTGGTGGAGGAAGTG
GTGGGTATTTTCCCGATGATAGTCCTTCGGATGTCATGGCCTTTCCACCT
CCTACTCCTTATAAGGGATCTCACCCTACCAGCCATGCCCCGCCTTCGGT
AGGGAAGCATTCTACCCCTTCCTCCCTCCTTGGTCATCACCACCACCACC
ATAGCCAATACCAGCAGCACCAGCACCCGTCCTCCTCCTCAAGACGCAGC
AGCAAAAGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAATAC
CCACAGCACCGTCTCTCGGTTCCAAGCTGACTTTGACGTTGTCCGTGTTA
TCGGCTCTGGAAGCTTTGGTGAGGTTTATGAGGCTCGATCAAGAGTGGAT
GGAGTTGAGTATGCAGTTAAGTGTACCCGTAAGAGGTTCAAAGGCCAGGC
AGATCGCGAACGGTATCTACAGGAGGTGAAGGCACTGGCGAAGGTCTGCG
CAGCGGACAGTAGCGAGGAGGTGCTGCACGTGGTGAGGTACCACCAGGCG
TGGATCGAAGACCATCGGTTGTTCATGCAGACGGAGTTGTGCGAGGAGAG
CTTAGAGCAGGCCATACGGGAGGGGGAGCCCGGGGGAAGGATGGGACTGG
AAGAGGTGTTTGACTTCGGGCGGCAGATGCTCTTGGCGCTGGACGTATTG
CATCGGCATGGCTTGGTGCATCTGGACGTGAAGCCCGCCAACATCTTCCT
CAAAGCCGGCCTGTTCAAACTCGGGGATTTCGGACTGGTGGCGTCTGTGA
ACAGCAGCGACGGGTGGGGGGACTGCCTTCAAGAGGGCGATTCGCGGTAC
ATGTCCGCGGAACTACTGCAGGACGGTCCGAAAGACTTGACCAAGTGCGA
CATTTTCTCGCTTGGCGCAACGGTGTATGAGATCTGTCGGGGGAGGCCCT
TGCCACCGAATGGGGAGGAATGGCACTCCCTGCGAAGTGGGTCGTTGCCG
GCGTTGGAATTTGGAGGACGGGTGGAGGCGGGTGTTATGAAGGATTTGAT
GAAAGTGCTGACGCAGATGATGGCGCCCGATCCTTCTCAACGTCCCTCTG
CCGCCGTCCTCCTGACACACCCACGCTTCCGCTCTCGACTCGAACGTGAA
TTGCTCAAGGAAAAAATGAAGAGCAAGAGTTTGGCCAAGGCCCTGGTACA
GAACCAGCAGCAGCAGAGTAAGGGCCGGAAGCTTGAAAGAACGCAAACTT
ATTAG

Synonyms

Publications