jgi.p|Nanoce1779_2|593260, mRNA_5953 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593260
Unique NamemRNA_5953
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1049
Alignment locationscaffold_14:163687..165462 -

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Properties
Property NameValue
TranscriptId593346
TrackFilteredModels2
ProteinId593260
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:163687..165462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593260gene_5953Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593260mRNA_5953-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5953CDS_5953Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5953 ID=mRNA_5953|Name=jgi.p|Nanoce1779_2|593260|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp
ACACCAGCACAGATCGGTTCTTGATTTGCCGACGCTAGACACCCGCTCCC
AGCACTGAAACCCACCCACTGGCCCGCCGATCATCATGCCTCGCCTCCAC
CCTGCTGCCGTTGCTGCGTTGGTTACCCTATGCTGCTTGGGTAGCACCAG
CGCATTTTTCTTGCAGGCGTTTCCGTCAACGACCGTAGTAGCAATTCGCC
AGGGCAGGCATCTCCATGCAGGCCCACCCGTTTCCTTGGACGACCAAGCC
GATTTCGTCAAAGCCGAACTCGCCCGCAAGAAGCAAGAATACGACGCCCA
ACTAAAAGCACGCATCTCCGCTTCCGTCGCTGGCACCAACCCCGCCGACA
GCGTCCCTCCCCTGGACTCCCTCCCATACATCCCTTATTTAGATGAAACG
GGGAAAATTAGTGACAGTGGAGCGGATGCAAAAGTGAAAGCAAGTGTGTA
TGCGGTGTACGATGAGAGTGGGACGGTGAAATACATTGGGGTCTCACGCT
CTGTCGCCCAGAGCTTGAGATTGAACTTGGCCCGGCAGCCGGAGCAGACG
TATGGCTTTCGGGTGTTTCACATCACTAAGCCAAGTCGTGTGCTGTTGGA
AATTACGCGGGATACGTGGATTGCACAGTTGGGGTATCAGCCGGAGGGCA
ATGACAACGGGCCTAAGCAGCAGCTGTGGGAAGGGGCCATGGACGTGAAG
CCTTTAATGAACGATGCCGACAACGCCGCTATGGAATCGGCCCGCATCAA
GAGACGCTCGGAAGAGAACGCCATGAAGAAAGTCACTCGCCGGTTCGAGG
AGGCCAAAATCACTGTGCTCAATGCCCGGGGCGTGACAGAGAGCCTTCGA
TTTGACCCAAAACTGAAAGGAAAGGGTTTGTTGGACTTGTTCCTAGACAA
GCAAGCGGATACGGCCGTGCCAGACTCCAAGCCTAAGCCTGCAGCTCCTT
AACCTGAGGATCGTGTAGTAGATTTAGGGAGAGGAGGGGGACCCGGAAGG
ATCTTGATTGTTTTATTGGAAAAAGAAGTATTCAAGAGGGGGAAATGAA
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protein sequence of jgi.p|Nanoce1779_2|593260

>mRNA_5953-protein ID=mRNA_5953-protein|Name=jgi.p|Nanoce1779_2|593260|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MPRLHPAAVAALVTLCCLGSTSAFFLQAFPSTTVVAIRQGRHLHAGPPVS
LDDQADFVKAELARKKQEYDAQLKARISASVAGTNPADSVPPLDSLPYIP
YLDETGKISDSGADAKVKASVYAVYDESGTVKYIGVSRSVAQSLRLNLAR
QPEQTYGFRVFHITKPSRVLLEITRDTWIAQLGYQPEGNDNGPKQQLWEG
AMDVKPLMNDADNAAMESARIKRRSEENAMKKVTRRFEEAKITVLNARGV
TESLRFDPKLKGKGLLDLFLDKQADTAVPDSKPKPAAP*
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mRNA from alignment at scaffold_14:163687..165462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5953 ID=mRNA_5953|Name=jgi.p|Nanoce1779_2|593260|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at scaffold_14:163687..165462- (Nannochloropsis oceanica)
ACACCAGCACAGATCGGTTCTTGATTTGCCGACGCTAGACACCCGCTCCC
AGCACTGAAACCCACCCACTGGCCCGCCGATCATCATGCCTCGCCTCCAC
CCTGCTGCCGTTGCTGCGTTGGTTACCCTATGCTGCTTGGGTAGCACCAG
CGCATTTTTCTTGCAGGCGTTTCCGTCAACGACCGTAGTAGCAATTCGCC
AGGGCAGGCATCTCCATGCAGGCCCACCCGTTTCCTTGGACGACCAAGCC
GAGTACGTATTTGATTTTGTTTCTTGAGCGAACGCGCTGAGAGGGAAAAT
ATCCATGCATGTAGCGTTTATTTGATTGTGCCTCTGGCTGCTCGGTCACG
CAGTGATGATGTGCATGGAATGTATAAGAACATAGATAATGTGAGAGTTC
GGGATGCTTTTCACATACCACCAGCCGTCCCCTTTTTCTCTCCAACCAAT
CCACATCTTCTACGCATGCGGTCCCGCCGTGAATGAACTTCCTCTTCCGA
AATGCTGTCAATTCAAGGCTAATTATCTTCTCTATTTCGTACTCCTCCCC
CTCTTCCTTCCATAGTTTCGTCAAAGCCGAACTCGCCCGCAAGAAGCAAG
AATACGACGCCCAACTAAAAGCACGCATCTCCGCTTCCGTCGCTGGCACC
AACCCCGCCGACAGCGTCCCTCCCCTGGACTCCCTCCCATACATCCCTTA
TTTAGATGAAACGGGGAAAATTAGTGACAGTGGAGCGGATGCAAAAGTGA
AAGCAAGTGTGTATGCGGTGTACGATGAGAGTGGGACGGTGAAATACATT
GGGGTCTCACGCTCTGTCGCCCAGAGCTTGAGATTGAACTTGGCCCGGCA
GCCGGAGCAGACGTATGGCTTTCGGGTGTTTCACATCACTAAGCCAAGTC
GTGTGCTGTTGGAAATTACGCGGGATACGTGGATTGCACAGTTGGGGTAT
CAGCCGGAGGTAAGGAAGGACTGTGTCTCCCCTTCCGACCTCCCCTTTCT
CGAGTTCTGCTCCCCTCCCCTCGTTCACTCCGTCTTATTTCGGTAGGGAC
GAGTTCAATTGTCTCTCGTTTGTTAATTCCTAAACCTTCCAATGGACGAT
CATACACACCCATACTCAGGGCAATGACAACGGGCCTAAGCAGCAGCTGT
GGGAAGGGGCCATGGACGTGAAGCCTTTAATGAACGATGCCGACAACGCC
GCTATGGGTACGCTCGTGCGTGCGCAAAGGAACTGAGCTGGAAGACTCTT
TGATTGTCATCCCCCCCCCCTTTTTTTTTTCCCTGCCTTTACGTGCTTTA
TCCTCCTTCATTTTCCTTTCAAGTTTTGTGATGTATCCGTGTGCTCGACC
TCCCATGCCCCCTCTTTTCGTCATTCACACCCGATCCTTTCTCTCAGTCT
CACGTTCGCTCTATCTCTTTCTCTTACCCACCCACCACTACCACCATCAA
CAAACAAACAGAATCGGCCCGCATCAAGAGACGCTCGGAAGAGAACGCCA
TGAAGAAAGTCACTCGCCGGTTCGAGGAGGCCAAAATCACTGTGCTCAAT
GCCCGGGGCGTGACAGAGAGCCTTCGATTTGACCCAAAACTGAAAGGAAA
GGGTTTGTTGGACTTGTTCCTAGACAAGCAAGCGGATACGGCCGTGCCAG
ACTCCAAGCCTAAGCCTGCAGCTCCTTAACCTGAGGATCGTGTAGTAGAT
TTAGGGAGAGGAGGGGGACCCGGAAGGATCTTGATTGTTTTATTGGAAAA
AGAAGTATTCAAGAGGGGGAAATGAA
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Coding sequence (CDS) from alignment at scaffold_14:163687..165462-

>mRNA_5953 ID=mRNA_5953|Name=jgi.p|Nanoce1779_2|593260|organism=Nannochloropsis oceanica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_14:163687..165462- (Nannochloropsis oceanica)
AATCGGCCCGCATCAAGAGACGCTCGGAAGAGAACGCCATGAAGAAAGTC
ACTCGCCGGTTCGAGGAGGCCAAAATCACTGTGCTCAATGCCCGGGGCGT
GACAGAGAGCCTTCGATTTGACCCAAAACTGAAAGGAAAGGGTTTGTTGG
ACTTGTTCCTAGACAAGCAAGCGGATACGGCCGTGCCAGACTCCAAGCCT
AAGCCTGCAGCTCCTTAAGGCAATGACAACGGGCCTAAGCAGCAGCTGTG
GGAAGGGGCCATGGACGTGAAGCCTTTAATGAACGATGCCGACAACGCCG
CTATGGTTTCGTCAAAGCCGAACTCGCCCGCAAGAAGCAAGAATACGACG
CCCAACTAAAAGCACGCATCTCCGCTTCCGTCGCTGGCACCAACCCCGCC
GACAGCGTCCCTCCCCTGGACTCCCTCCCATACATCCCTTATTTAGATGA
AACGGGGAAAATTAGTGACAGTGGAGCGGATGCAAAAGTGAAAGCAAGTG
TGTATGCGGTGTACGATGAGAGTGGGACGGTGAAATACATTGGGGTCTCA
CGCTCTGTCGCCCAGAGCTTGAGATTGAACTTGGCCCGGCAGCCGGAGCA
GACGTATGGCTTTCGGGTGTTTCACATCACTAAGCCAAGTCGTGTGCTGT
TGGAAATTACGCGGGATACGTGGATTGCACAGTTGGGGTATCAGCCGGAG
ATGCCTCGCCTCCACCCTGCTGCCGTTGCTGCGTTGGTTACCCTATGCTG
CTTGGGTAGCACCAGCGCATTTTTCTTGCAGGCGTTTCCGTCAACGACCG
TAGTAGCAATTCGCCAGGGCAGGCATCTCCATGCAGGCCCACCCGTTTCC
TTGGACGACCAAGCCGAAATCGGCCCGCATCAAGAGACGCTCGGAAGAGA
ACGCCATGAAGAAAGTCACTCGCCGGTTCGAGGAGGCCAAAATCACTGTG
CTCAATGCCCGGGGCGTGACAGAGAGCCTTCGATTTGACCCAAAACTGAA
AGGAAAGGGTTTGTTGGACTTGTTCCTAGACAAGCAAGCGGATACGGCCG
TGCCAGACTCCAAGCCTAAGCCTGCAGCTCCTTAAGGCAATGACAACGGG
CCTAAGCAGCAGCTGTGGGAAGGGGCCATGGACGTGAAGCCTTTAATGAA
CGATGCCGACAACGCCGCTATGGTTTCGTCAAAGCCGAACTCGCCCGCAA
GAAGCAAGAATACGACGCCCAACTAAAAGCACGCATCTCCGCTTCCGTCG
CTGGCACCAACCCCGCCGACAGCGTCCCTCCCCTGGACTCCCTCCCATAC
ATCCCTTATTTAGATGAAACGGGGAAAATTAGTGACAGTGGAGCGGATGC
AAAAGTGAAAGCAAGTGTGTATGCGGTGTACGATGAGAGTGGGACGGTGA
AATACATTGGGGTCTCACGCTCTGTCGCCCAGAGCTTGAGATTGAACTTG
GCCCGGCAGCCGGAGCAGACGTATGGCTTTCGGGTGTTTCACATCACTAA
GCCAAGTCGTGTGCTGTTGGAAATTACGCGGGATACGTGGATTGCACAGT
TGGGGTATCAGCCGGAGATGCCTCGCCTCCACCCTGCTGCCGTTGCTGCG
TTGGTTACCCTATGCTGCTTGGGTAGCACCAGCGCATTTTTCTTGCAGGC
GTTTCCGTCAACGACCGTAGTAGCAATTCGCCAGGGCAGGCATCTCCATG
CAGGCCCACCCGTTTCCTTGGACGACCAAGCCGAAATCGGCCCGCATCAA
GAGACGCTCGGAAGAGAACGCCATGAAGAAAGTCACTCGCCGGTTCGAGG
AGGCCAAAATCACTGTGCTCAATGCCCGGGGCGTGACAGAGAGCCTTCGA
TTTGACCCAAAACTGAAAGGAAAGGGTTTGTTGGACTTGTTCCTAGACAA
GCAAGCGGATACGGCCGTGCCAGACTCCAAGCCTAAGCCTGCAGCTCCTT
AAGGCAATGACAACGGGCCTAAGCAGCAGCTGTGGGAAGGGGCCATGGAC
GTGAAGCCTTTAATGAACGATGCCGACAACGCCGCTATGGTTTCGTCAAA
GCCGAACTCGCCCGCAAGAAGCAAGAATACGACGCCCAACTAAAAGCACG
CATCTCCGCTTCCGTCGCTGGCACCAACCCCGCCGACAGCGTCCCTCCCC
TGGACTCCCTCCCATACATCCCTTATTTAGATGAAACGGGGAAAATTAGT
GACAGTGGAGCGGATGCAAAAGTGAAAGCAAGTGTGTATGCGGTGTACGA
TGAGAGTGGGACGGTGAAATACATTGGGGTCTCACGCTCTGTCGCCCAGA
GCTTGAGATTGAACTTGGCCCGGCAGCCGGAGCAGACGTATGGCTTTCGG
GTGTTTCACATCACTAAGCCAAGTCGTGTGCTGTTGGAAATTACGCGGGA
TACGTGGATTGCACAGTTGGGGTATCAGCCGGAGATGCCTCGCCTCCACC
CTGCTGCCGTTGCTGCGTTGGTTACCCTATGCTGCTTGGGTAGCACCAGC
GCATTTTTCTTGCAGGCGTTTCCGTCAACGACCGTAGTAGCAATTCGCCA
GGGCAGGCATCTCCATGCAGGCCCACCCGTTTCCTTGGACGACCAAGCCG
AAATCGGCCCGCATCAAGAGACGCTCGGAAGAGAACGCCATGAAGAAAGT
CACTCGCCGGTTCGAGGAGGCCAAAATCACTGTGCTCAATGCCCGGGGCG
TGACAGAGAGCCTTCGATTTGACCCAAAACTGAAAGGAAAGGGTTTGTTG
GACTTGTTCCTAGACAAGCAAGCGGATACGGCCGTGCCAGACTCCAAGCC
TAAGCCTGCAGCTCCTTAAGGCAATGACAACGGGCCTAAGCAGCAGCTGT
GGGAAGGGGCCATGGACGTGAAGCCTTTAATGAACGATGCCGACAACGCC
GCTATGGTTTCGTCAAAGCCGAACTCGCCCGCAAGAAGCAAGAATACGAC
GCCCAACTAAAAGCACGCATCTCCGCTTCCGTCGCTGGCACCAACCCCGC
CGACAGCGTCCCTCCCCTGGACTCCCTCCCATACATCCCTTATTTAGATG
AAACGGGGAAAATTAGTGACAGTGGAGCGGATGCAAAAGTGAAAGCAAGT
GTGTATGCGGTGTACGATGAGAGTGGGACGGTGAAATACATTGGGGTCTC
ACGCTCTGTCGCCCAGAGCTTGAGATTGAACTTGGCCCGGCAGCCGGAGC
AGACGTATGGCTTTCGGGTGTTTCACATCACTAAGCCAAGTCGTGTGCTG
TTGGAAATTACGCGGGATACGTGGATTGCACAGTTGGGGTATCAGCCGGA
GATGCCTCGCCTCCACCCTGCTGCCGTTGCTGCGTTGGTTACCCTATGCT
GCTTGGGTAGCACCAGCGCATTTTTCTTGCAGGCGTTTCCGTCAACGACC
GTAGTAGCAATTCGCCAGGGCAGGCATCTCCATGCAGGCCCACCCGTTTC
CTTGGACGACCAAGCCGA
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Synonyms
Publications